ID:

dsi_9042

 Coordinate:

3l:7633067-7633216 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.4 -17.1 -17.1

Flybase annnotation

exon [3l_7633217_7634015_-]; five_prime_UTR [3l_7633217_7634015_-]; intron [3l_7628986_7633216_-]

No Repeatable elements found

mature
  1. dsi_9042  3l:7633111-7633129 -
  2. 3r:17362039-17362057 +
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACCTACCCTTTTTTGGGGAAAAACAAGGAGGCGCGGTTCAACAGCGACAGGTAATTCCATTTCTGCGCTCTCTTTGGCTCTCTTTGGGGTTCTCTTTGTGTGTGTTACGACATCAAACCACATGCTATGCCTCTATGTGTGTGTGTGTGTTCAATGTGAATGAACGCTCGACAAAGTTGCGTTTTCAAAGATTGGCACATTCAAGTCTCTCTCTTAGTTTTTCGCTCTTTGTCGTGGAAAAACAGTTTTT
**************************************************************..((((.......((((((....))))))......)))).........(((..((((((((((.((((......))))))))))).)))..)))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 GSM343915
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................TGTGTGTGTGTGTTCAATG.............................................................................................. 19 0 2 1.00 2 2 0 0 0 0 0 0 0
..............................................................CTGCGCTCTCTTTGGCTCTCTTTGGG.................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................................TGTGTGTGTGTGTTCAAT............................................................................................... 18 0 2 1.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................GTTGCGTTTTCAAAGATTGGCA..................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................TGTATGTTAAATGAGAATGAAC..................................................................................... 22 3 3 0.67 2 0 0 0 2 0 0 0 0
..............................................ACCGTTAATTCCATTCCTGCG....................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................AGGTTGCGTGTTCAAAGATCGG....................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0
................................................................................TCTTTGGGTCTCTTTTTGTGTG.................................................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0 0 0
.......CTTTGTTGGGGAAGAACA................................................................................................................................................................................................................................. 18 2 10 0.10 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................GTTCAAGTCTCTCTCTTCGC................................ 20 3 11 0.09 1 0 0 0 1 0 0 0 0
.......................................................................................................................................TGTGTGTGTGTGTGTTCA................................................................................................. 18 0 14 0.07 1 0 0 0 0 1 0 0 0
..................................................................................TTCGGGGTTCTCTTCGT....................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1 0
.........................................................................................................................................TGTGTGTGTGTGTTCA................................................................................................. 16 0 20 0.05 1 0 0 0 0 1 0 0 0
................................................................................................TGTGGATGTTACGGCATCA....................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGGATGGGAAAAAACCCCTTTTTGTTCCTCCGCGCCAAGTTGTCGCTGTCCATTAAGGTAAAGACGCGAGAGAAACCGAGAGAAACCCCAAGAGAAACACACACAATGCTGTAGTTTGGTGTACGATACGGAGATACACACACACACACAAGTTACACTTACTTGCGAGCTGTTTCAACGCAAAAGTTTCTAACCGTGTAAGTTCAGAGAGAGAATCAAAAAGCGAGAAACAGCACCTTTTTGTCAAAAA
**********************************************************************************************..((((.......((((((....))))))......)))).........(((..((((((((((.((((......))))))))))).)))..)))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
......................................................................AGAAACTGAGAGAAA..................................................................................................................................................................... 15 1 20 0.80 16 10 1 4 0 0 0 1
.....................................................................GAGAAACTGAGAGAAA..................................................................................................................................................................... 16 1 14 0.57 8 6 1 1 0 0 0 0
.....................................................................GAGAAACTGAGAGAA...................................................................................................................................................................... 15 1 20 0.35 7 4 0 3 0 0 0 0
...............................................................................................................TAATTTGGTGTACGAT........................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0
......................................................................................................................................................................GAGCTGTTTTAACGCAAATAT............................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0
......................................................................AGAAACCGAGAGAAA..................................................................................................................................................................... 15 0 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACCTTCACCTTTTTGTCAAAAA 22 3 5 0.20 1 0 0 0 0 0 1 0
..........................................................................................................................................................GCACTTACTTGTGAGCTGC............................................................................. 19 3 7 0.14 1 0 0 0 0 1 0 0
......................................................................................................ACAATGATGTAGTGTAGTGT................................................................................................................................ 20 3 8 0.13 1 0 1 0 0 0 0 0
..............................................................................................................................................................TTACTTGCGATCTGT............................................................................. 15 1 9 0.11 1 1 0 0 0 0 0 0
......................................................................................................ACAATGCTGAAGTTGGGTC................................................................................................................................. 19 3 12 0.08 1 0 1 0 0 0 0 0
.......................................................................................................................................ACACACACACACACAAGT................................................................................................. 18 0 14 0.07 1 0 1 0 0 0 0 0
.......................................................................................................CAATGCTGAAGTGTGG................................................................................................................................... 16 2 17 0.06 1 0 0 1 0 0 0 0
..........................................................................................AGAGAAACACACGAAATGCG............................................................................................................................................ 20 3 19 0.05 1 0 1 0 0 0 0 0
..................................................CATTACGGTAAAGAC......................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0
...................................CAAGTTGTTGCTGTCC....................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:29 AM