ID:

dsi_9037

Coordinate:

3l:16268588-16268800 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-21.9	-21.8	-21.8

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
ROO_I-int	LTR	Pao	-

Sense Strand Reads

TCCCACACCATCAACCAACTGCAACAATAAAATCAACAACATTATTTGTGTGCTTTCTGAACTACCGTTAACCTAACGTTACACACAACACGAACAACACACGCCACACACACATGCACACTAACAACAACGACTGTGGACAATGGTGCAACTAATTAATCGTCACCTCGAAATCGATAACTATCGAAAAAATCGAATAGATGAATCGGAATACTTCTCAGAGCAATTGGCAGCTGAACAATTCTCGCAATATGCACCCACAGCCTCACCCATACCGCCAGCAGCGACAACACTACACCAGCAACATCAGCAA ****************************************************.(((((.....(((((...))))).......................(((((....((((....................)))).....)))))...........(((((...((((..(((((....))))).....))))...))))).)))))*****************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M025 embryo	M024 male body	SRR553486 Makindu_3 day-old ovaries	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.....................................AACATGGTTTATGTGCTTTCTG..............................................................................................................................................................................................................................................................	22	3	1	9.00	9	8	1	0	0	0	0	0	0
......................................................TTCTGAACTACCGTTAACC................................................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................................................................TGCAACTAATACAGCGTCACCT.................................................................................................................................................	22	3	1	1.00	1	0	0	0	0	0	0	1	0
..................................................TGCTTTCTGAACTACCGTTAACCTAACGTT.........................................................................................................................................................................................................................................	30	0	1	1.00	1	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................ACAACACTACACCAGCAACATC.....	22	0	1	1.00	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................CGAAAAAATCGAATAGATGAATCGGA.......................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................AATCGGAATACTTCTCAGAGCAATT.....................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................TGAATTGGAATCCTTCTCACA...........................................................................................	21	3	5	0.20	1	0	0	1	0	0	0	0	0
..............................................................................................................................................................................CGGTAACTATCGAAA............................................................................................................................	15	1	8	0.13	1	0	0	0	0	0	0	0	1
.......................................................................................................................................GTGGACAATGATGCAAC.................................................................................................................................................................	17	1	9	0.11	1	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................AAAGATGAATCGGTAGACTT.................................................................................................	20	3	9	0.11	1	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................AGCTGAAAAATTCTCGAA................................................................	18	2	13	0.08	1	0	0	1	0	0	0	0	0
.......................................................................................................................................GTGGACAATGATGCA...................................................................................................................................................................	15	1	18	0.06	1	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................ACCCAGACCGCCAGC...............................	15	1	19	0.05	1	0	0	0	0	0	0	0	1
...................................................................................................................................................................................ACTCTCGAGAAAATCGA.....................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

AGGGTGTGGTAGTTGGTTGACGTTGTTATTTTAGTTGTTGTAATAAACACACGAAAGACTTGATGGCAATTGGATTGCAATGTGTGTTGTGCTTGTTGTGTGCGGTGTGTGTGTACGTGTGATTGTTGTTGCTGACACCTGTTACCACGTTGATTAATTAGCAGTGGAGCTTTAGCTATTGATAGCTTTTTTAGCTTATCTACTTAGCCTTATGAAGAGTCTCGTTAACCGTCGACTTGTTAAGAGCGTTATACGTGGGTGTCGGAGTGGGTATGGCGGTCGTCGCTGTTGTGATGTGGTCGTTGTAGTCGTT *****************************************************************************************************.(((((.....(((((...))))).......................(((((....((((....................)))).....)))))...........(((((...((((..(((((....))))).....))))...))))).)))))****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902008 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
....CGTGGTAGCTGGTTGAGGTTGTTA.............................................................................................................................................................................................................................................................................................	24	3	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................CGGGGATGTCGGAGTGGGTATA......................................	22	3	1	1.00	1	0	0	1	0	0	0	0
..............................................................................AATGTGTGTCGTGCTT...........................................................................................................................................................................................................................	16	1	2	0.50	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................TCGGCGTAGGTATGGCGGTC................................	20	2	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................................CGTATGATTGTTGTTGCTGA..................................................................................................................................................................................	20	1	3	0.33	1	1	0	0	0	0	0	0
......................................................................................................................GTGATTGTTGTTGCTGA..................................................................................................................................................................................	17	0	3	0.33	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GGTGATGTGGTCGTTG........	16	1	16	0.19	3	0	0	0	1	1	1	0
.......................................GTAATAAACACGCGAGAG................................................................................................................................................................................................................................................................	18	2	6	0.17	1	1	0	0	0	0	0	0
..................................................................CAATTGGATGGAAATGAGT....................................................................................................................................................................................................................................	19	3	13	0.15	2	2	0	0	0	0	0	0
............................................................................................TTGTTGTGTGAGATGTGTGTGT.......................................................................................................................................................................................................	22	2	7	0.14	1	0	0	0	0	1	0	0
....................................................................................................................GTGTGATTGTTGTTGCTG...................................................................................................................................................................................	18	0	7	0.14	1	1	0	0	0	0	0	0
...................................................................................................................CGTGTGATTGTTGTTGCT....................................................................................................................................................................................	18	0	7	0.14	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GGTGTCGGAGTGGGAATA......................................	18	2	8	0.13	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................AGTCTCGTGAACCGTC................................................................................	16	1	8	0.13	1	0	0	0	0	0	0	1
.........................TTATCTTAGGTGTTGGAATA............................................................................................................................................................................................................................................................................	20	3	10	0.10	1	0	0	0	0	0	1	0
........................................................GACTTGATGGCGATT..................................................................................................................................................................................................................................................	15	1	10	0.10	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................TGGTGATGTGGAAGTTGTAGT....	21	3	11	0.09	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................TGGGTGTCGGAGTCGGAA........................................	18	2	12	0.08	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................GGCTATGGAGGTCGTCG............................	17	2	14	0.07	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................AGTCTCGTTACCCGT.................................................................................	15	1	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................TGCTGCTGTCATGTGGTC............	18	3	20	0.05	1	0	0	0	1	0	0	0
............................................................AGATGGCAATTGGATA.............................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................GGCTATGGAGGTCGTC.............................	16	2	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 03:51 AM