ID:

dsi_9018

 Coordinate:

2l:6638414-6638629 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_6638630_6638950_-]; CDS [2l_6638630_6638950_-]; exon [2l_6638305_6638413_-]; CDS [2l_6638305_6638413_-]; intron [2l_6638414_6638629_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTGCTGTTGGCTATATCAATTCATTAACCGCCGGCGATTGCGATCATTCCGCTTGTTGGTTGCATCGTAAAAACGGATTTTCCATGTACTACTGGCCATATAATCGCCTAATGAAATATATATATACATATGTATATGGGCACACGCTTGTGAACCAGCGATAACGTATTGTTATTTAACAAAATTAATCGCGATTTGTATTACCATCGCAGACTTCCACACATTCGCACACGGACATTGGACCGGCGCGAAGGAAGAGCAT
**************************************************.....(((...(((..((((...(((((((......((((((((((((((..........))))))))((((....)))).....(((........))).......))))))))))))).((((((((....))))))))(((.((((....))))..)))(((((...((.(((((....))))).))..))))).....))))..)))..))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 O002
Head
..............................................................................................................................................................................................................................................................................CCACACATTCGCACACGGACA......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................CTATGAGCAAAATCCGAGGCG....................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TCCACACATTCGCACACGGACA......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CTTCCACACATTCGCACACGGA........................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................ATTGGACCGGCGCGAAGGAAGA.... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................ACACGGACATTGGACCGGCGCG............ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................ACACGGACATTGGACCGGC............... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................ACCATAGCAGACGTCCCCACA....................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................TTGGACCGGCGCAACGGA....... 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................ATCGCCTAAGGAAATA................................................................................................................................................ 16 1 5 0.20 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................TCCATGCGCTACTGGCCA.................................................................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................CTCGGCGCGAAGGAAGAGCC. 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0
..............................................................................................................TGGTTGCGTCGTAAAAAA............................................................................................................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0
..................................................................................................TATTCCGCTTGTTGG........................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0
............................................TCACAGGTGAGTCCT................................................................................................................................................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 0 0 1 0 0
........................................................................................................GCGTGTTGGTTGCAACG................................................................................................................................................................................................... 17 2 15 0.07 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAGCATAGCAGACTTCGA........................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................TATACACATATGTATATG............................................................................................................................ 18 1 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTATGCTATTAGGGCGGATACTCGTTTTAGGCTCCGCATTTTAAAGTGTCCACTCACGACAACCGATATAGTTAAGTAATTGGCGGCCGCTAACGCTAGTAAGGCGAACAACCAACGTAGCATTTTTGCCTAAAAGGTACATGATGACCGGTATATTAGCGGATTACTTTATATATATATGTATACATATACCCGTGTGCGAACACTTGGTCGCTATTGCATAACAATAAATTGTTTTAATTAGCGCTAAACATAATGGTAGCGTCTGAAGGTGTGTAAGCGTGTGCCTGTAACCTGGCCGCGCTTCCTTCTCGTA
**************************************************.....(((...(((..((((...(((((((......((((((((((((((..........))))))))((((....)))).....(((........))).......))))))))))))).((((((((....))))))))(((.((((....))))..)))(((((...((.(((((....))))).))..))))).....))))..)))..))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................................................................AATGGTAGCGTCTGAAGGTGT......................................... 21 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................................................................................................AAGGTGTGTAAGCGTGTG.............................. 18 0 1 1.00 1 0 1 0 0 0 0
CTATGCTATTAGGGCGGAT......................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
............GGCGGATACTCGTTTTAGGCT........................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................................................................................................CTTGGTCGCTATTGCATAAC........................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................TGCCTGTAACCTGGCCGCGCTT.......... 22 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................CTGAAGGTGTGTAAGCGTGTGC............................. 22 0 1 1.00 1 1 0 0 0 0 0
.........................TTTAGGCTCCGCATTTTAAAG.............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CCAGAAGGTACATGATGCC........................................................................................................................................................................ 19 3 5 0.40 2 0 0 0 0 2 0
..............................................................................................................................TGACCAGAAGGTACATGATG.......................................................................................................................................................................... 20 3 5 0.40 2 0 0 0 0 2 0
.................................................................ATATAGTTAAGGAATCGGC........................................................................................................................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0
.................................................................ATATAGTTAAGGAATT........................................................................................................................................................................................................................................... 16 1 9 0.22 2 0 2 0 0 0 0
....................................................................................................................................................................................................................................................................AGCGTCAGAAGGTGT......................................... 15 1 5 0.20 1 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................................................CTGGCGGCGCTGCCTTC..... 17 2 9 0.11 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................ATTGCATAACAATAAAT.................................................................................... 17 0 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................TGGAAGCGTCTGAATGTCT......................................... 19 3 18 0.06 1 0 0 0 0 0 1
......................................................................................................................................................................................................TCGAACACTCGGTCGC...................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1
..................................................................................................................................CAGAAGGTACATGATGCC........................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0
.................................................................ATATAGTTAAGGAAGTGGG........................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................AAGCGTCAGAAGGTGTG........................................ 17 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:6638364-6638679 - dsi_9018 GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----CT-------------------------------------------------------------------GTTGGCT------------------------------------------ATAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------CGATTGCGATCATT--CCGCTTGTTGG-T--TGCATCGTA--AAAACG-GATTTTCCATG--------------T--ACT-----------ACTGGCCAT--------------ATAATCG-----------CC---TAATGA--------------AA-TATAT----ATAT--ACATATGTATATGGGCACA-----------------------CGCTTGTGAACC---------------------------------------AGC------------------------------------------------GATAAC--GTAT--TGTTATT------------------------------TA------------------------------------ACAAAATTAATCGCGATTT------G--TA--TTAC----CATCGCAGACTTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCAT
droSec2 scaffold_3:2403906-2404213 - GATACGATAATCTCGCCTACGAGCAAAACCCGCGGCGTAAAATTTCACAGGTGAGTG----CT-------------------------------------------------------------------GTTGGCT------------------------------------------ATAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------CGATTGCGATCATT--CCGCTTGTTGG-T--TGCATCGTA--AAAACG-GATTTTCCATG--------------T--ACT-----------ACTGGCCAT--------------ATAATCG-----------CC---TAATGA--------------AA-TATATGTGTATAT--------------GGGCACA-----------------------CGCTTGTGAACC---------------------------------------AGC------------------------------------------------GATAAC--TTAT--TGTTATT------------------------------TA------------------------------------ACAAAATTAATCGCGATTT------G--TA--TTAC----CATCGCAGACTTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCAT
dm3 chr2L:6863767-6864081 - GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----CT-------------------------------------------------------------------GTTGGCT------------------------------------------ATAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------CGATAGCGATCATT--CCGCTTATTGG-T--TGCATCGTA--AAAACG-GATTTTCCATG--------------T--ACT-----------ACTGGCCAT--------------ATAATCG-----------AC---TAATGA--------------AAATATATGTATATAT--------------GGTCACA-----------------------CGCTTGTGAACC---------------------------------AGTGCCAGC------------------------------------------------GATAAC--GTAT--TGTTATT------------------------------TA------------------------------------ACAAAATTAATCGCGATTT------G--TA--TTAC----CATCGCAGACTTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCAT
droEre2 scaffold_4929:15782763-15783058 - GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----CA-------------------------------------------------------------------GTTGGCT------------------------------------------GTAT------------------------------------------------CA--ATTCATAA-ACCGCCAG------CTATTGCGATCGTT--CAGCTTGTCGG-G--TGCATCGTA--AAAACA-GAT-------G--------------C--A--------------CT-GCCAT--------------ATAAT-------------CC---TAATGA--------------AAATAT------ATAT--------------G-GCACA-----------------------CGTTTGTGAACC-------------------------------ATAACGTTACC------------------------------------------------AATAAC--GCA---TGTTATC------------------------------TA------------------------------------ACCAAATGAATCTCCATTC------G--TA--CTCC----CAACGCAGACTTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCAT
droYak3 2L:6040308-6040622 + GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----CC-------------------------------------------------------------------GTTGGCC-----------------------------------GTTGACTATAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------CGATTGCGATCATT--CCGCTTGTTGGGTGGTGCATCGTA--AAAACG-GATTTTCCATG--------------T--A--------------CT-GCCAT--------------ATAATCT-----------GC---TAATGA--------------AAATAT------ATAT--------------GGGCACA-----------------------CGCTTGTGAACC---------------------------------AGTGCTACC------------------------------------------------GATAAC--GTAT--GGTTATT------------------------------TA------------------------------------ACTGAATTAATCTATATTC------G--TA--TTCG----GATTGCAGACCTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCAT
droEug1 scf7180000409463:2245452-2245761 + --TACGATAATCCCGCCTACGAGCAAAATCCAAGGCGTAAAATTTCACAGGTAAGCA--TGCA--G----------------------------------------------------------------GGAGGAC------------------------------------------TTAG------------------------------------------------CA--ATTCATTA-TTAGCTGG------CTATTGTGATTATT--TCGGTTGATAG-T--TGCATCGTA--AAAACG-GATTTTCTATG------------TGC--A--------------CTGGCCAT--------------ATAATCT-----------CT---TAATGA--------------AAGTATA-----TTAT--------------TGTCACA-----------------------CGGTCGTAGACT---------------------------------TGTGCTAGC------------------------------------------------GATAAC--GGTT--TGTTATT------------------------------CA------------------------------------GTGAAAATAACTTCGATTG------G--TA--TTCC----CTTCGCAGACTTCCACACACTCGCACACGGATATTGGCCCG---GCGCGAAGGAAGAGCAT
droBia1 scf7180000302422:2645290-2645540 - GATACGATAATCCCGCCTATGAGCAAAACCCGAGGCGCAAAATTTCACAGGTGAGTG----GG-------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------A--GTTCATTA-GACGACGG------CGATTGCGAT---------------GG-G--TGCATCGTA--AAAACG-GATTTT-----------------------------------------------------------------------------CC---TAATGA--------------AAATAT------TTAT--------------GGGCTCA-----------------------CGCTC-AGTAGT---------------------------------T--------------------------------------------------------GATACC--GTTT--CGTCGTT------------------------------CA------------------------------------GTCGGAATAACCTCGATTC------G--CA--TTCC----CATCGCAGACCTCCACACACTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCAT
droTak1 scf7180000415361:15673-15951 + GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----GA-------------------------------------------------------------------AGT----------------------------------------------GGAG------------------------------------------------AG--GTTCATTA-GACGCCGA------CGATTGCGATCAAT--TCGGTTGATGG-G--TGCATCGTA--AAAACG-GATTTGGC-TGTG------------T--T--------------C----TAG--------------CTAATCT-----------CT---TAATGA--------------AAATAT------ATAT--------------GGGCAAA-----------------------C-----------------------------------------------------------------------------------------------------GATAAC--AGTT--CGTCATT------------------------------CA------------------------------------GTTGGAATAACCTCGATTC------G--TA--TTCT----CATCGCAGACCTCCACGCACTCGCACACGGATATTGGACCG---GCGCGAAGGAAGAGCAT
droEle1 scf7180000490970:89759-90052 - GCTACGATAATCCCGCCTATGAGCAAAACCCGAGGCGTAAAATTTCACAGGTGAGTG----GGGC------------------------------------------------------------------------------------------------------------------GGAG------------------------------------------------CA--ATTCATTA-GTCGCTGG------CGATTGCGATAAAT--CGGC-------------AATCGTA--AAATCG-GATTTTCCGTG--------------T--A--------------CTGGCCAT--------------ATAATCT-----------CC---TAATGA--------------AAATAT------ATAT--------------GAGCAAA-----------------------CGCTT-CGCACT---------------------------------TGTGTTGGC------------------------------------------------GATAACACGGTT--TGGCATT------------------------------CA------------------------------------CCTAAAATACCCTCTATTC----CGA--AA--ATCC----CATCGCAGACCTCCACACACTCGCACACGGATATAGGACCT---GCGCGCAGGAAGAGCAT
droRho1 scf7180000780014:36663-36962 - GATACGACAATCCCGCCTACGAGCAAAACCCGAGGCGTAAAATTTCACAGGTGAGTG----GAAG------------------------------------------------------------------------------------------------------------------GTAG------------------------------------------------CG--ATTCATTA-GTCGCTGT------CAATTGCGATCATA--TCGGTTGATGA-G--GGCATCGTA--AAATCG-GATTTTCAGTG--------------T--A--------------CCGAGTAT--------------ATAATCT-----------CC---TAATGA--------------AAATAT------ATAT--------------GGGCACA-----------------------CGCTT-TGCACT---------------------------------TGTGTTAGC------------------------------------------------GATAAC--AGTC--TGGCATT------------------------------TA------------------------------------CCCAAACTAACCCTGCTCC------G--TA--ATCC----CATCGCAGACTTCCACACACTCTCACACGGATATAGGACCA---GCTCGCAGGAAGAGCAT
droFic1 scf7180000453815:226085-226386 - GATACGATAATCCCGCCTACGAACAGAACCCGAGGCGTAAAATTTCACAGGTGAGTG----TGCT------------------------------------------------------------------------------------------------------------------GTCG------------------------------------------------GA--ATTCATTA-GTCGCTAC------CGATTGCGATTGTT--TCGGCAAATAC-G--TA---CGTAATAAAACG-GATTTTTTGTG--------------C--T--------------CCGCTCGT--------------ATAATCT-----------CG---TAATGA--------------AAATAT------ATATAC--G---------GGGCGAA-----------------------CGCTT-CGAACT---------------------------------TGTGTTAAC------------------------------------------------GATAAC--GGTC--TGTCGTT------------------------------CG------------------------------------GGTTAAATAACTCTGATTT------T--TG--TCAA----CACCGCAGACTTCCACACACTCGCACTCGGATATTGGGCCG---GCGCGAAGGAAGAGCAT
droKik1 scf7180000302468:279909-280229 + GATACGATAATCCCGCTTATGAGCAAAACCCGAGACGTAAAATTTCACAGGTGAGTG----GC-------------------------------------------------------------------GG----C------------------------------------------GTAG------------------------------------------------CG--AATCGGTAGAGCGATTG------CGATTGCGATCATT--TCGCTTGATGG----GGCATCGTA--AAATAG-GATTTTC-GCG--------------T--G--------------CGGGACAT--------------GCAATCT-----------CC---TAATGA--------------AAATAT------ATATACGTATATGTATA-----------------------------------T-GGAACGAGCTTTGATTATTGGCTGAGTT-------AC----------------------------------------------------GCGTGAAGATAAG--AGTA--TACCA---------------------------------G------------------------------------GCTAAAATAACTTCAAATC------C--TA--TTCT----TGCCGCAGACCTCCACACACTCGCACAGCGATATTGGACCG---GCGCGAAGGAAGAGCAT
droAna3 scaffold_12916:8451054-8451388 - --TACGATAATCCCGCCTATGAGCAGAACCCCAGGCGGAAAATTTCACAGGTGAGAG----CTCG------------------------------------------------------------------------------------------------------------------GGTG------------------------------------------------CC--GTGTGGTT-GTTGATTA------CAATTGTGATCAGT--TCGTTCGATTGGTG-GGCATCATA--AAATCG-GATTTTGTTTG--------------G--C--------------CTGTTCGT--------------TTAATCT-----------CC---TAATGA--------------AAACGG------TCGT--------------TTGCGTA-----------------------CATTT-TGTACTTGGGTTGATTATCGGATCAGTT-------TCA---------------------------------------------------GACCGAAGATAAC--GAAG--TG-------------------------------------------GGTGGGTTAAAAATAAGTATAGACTCTAGAATAAAATGA-------------------AA--TTTC----CCCAACAGACATCCACACACTCGCACACGGATATCGGGCCG---GCGCGAAGGAAGAGCAT
droBip1 scf7180000396572:2945971-2946306 + GATACGATAATCCCGCCTATGAGCAGAACCCCAGGCGGAAAATTTCACAGGTGAGAGTGTGCT---------------------------------------------------------------------CGGGT------------------------------------------GTGC------------------------------------------------CG---TGTGGTT-GTTGATTA------CAACCGTGATCAGT--CGGTTCGATTGGCG-GGCATCGTA--AAATCG-GATTTTGTGAG--------------G--A--------------CTGTTCGT--------------TTAATCT-----------CC---TAATGA--------------AAATAG------TCGT--------------TTGCGTA-----------------------CATTT-TGTACCTGCCTTGATTATCGGATGAGTT-------TCA---------------------------------------------------GTTCGAAGATAAC--GAAATC---------------------------------------------GGCGGGTTAAAAATAAG-------TCTTGAATAAAACG-----------------A--AA--TTTC----CCCGACAGACCTCCACACACTCTCACTCGGATATCGGGCCG---GCGCGAAGGAAGAGCAT
dp5 4_group5:361255-361562 - GATACGATAACCCCGCCTTTGAGCAAAATCCTAGGCGTAAAATTTCACAGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATTA------CGATTACGATCAAT--AGGT-----------GAGATTGTA--AATTTG-GATTTTGTGTG--------------T--GCTTAGATTTACGCGGTAGCCAT--------------AAATACT-----------CG---TAA---------------------------------------------------------------AATGTTGCTCA---TATT--TCTGCTTTTATTGATTATCGGATGACGTCGTGCGATC----------------------------------------------------GTGAAAAGATAAC--GACAGA---------------------------------------------GAGTGA------------------------TTGAAAATAACCTCGAATTATATTTA--TA--TTGG----AATTACAGACCTCCACACACTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCAT
droPer2 scaffold_5:4858806-4859113 - GATACGATAACCCCGCCTTTGAGCAAAATCCTAGGCGTAAAATTTCACAGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATTA------CGATTACGATCAAT--AGGT-----------GAGATTGTA--AATTTG-GATTTTGTGTG--------------T--GCTTAGATTTACGCGGTAGCCAT--------------AAATACT-----------CG---TAA---------------------------------------------------------------AATGTTGCTCA---TATT--TCTGCTTTTATTGATTATCGGATGACGTCGTGGGATC----------------------------------------------------GTGAAAAGATAAC--GACAGA---------------------------------------------AAGTGA------------------------TTGAAAATAACCTCGAATTATATTTA--TA--TTGG----AATTACAGACCTCCACACACTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCAT
droWil2 scf2_1100000004585:6865771-6866205 + GCTATGACAATATTGCCTATGAGCAAAATCCGCGTCGAAAAATTTCACAGGTGAGAT----GGTTGGCGGGACAGAGAAGGATTTTAAGTGGACTAGACTTGTGGCGTACCCACATT-----------------------------------------------------------------------------------TCAGTCAATTGCCCCCATCCATGTGCATGGCGCTGCTTCGGTA-ACTGGCTGCTATTGCTATTATAATTAAC--TTGCTCGTTGG-GG-TCCCCCATA--AATTTG-GATTTAGT-CGCATTCGCCTATATGCCCACATATATATACGATT--------------------------------------------TAATGA--------------CAA---------------------------------AACTCTATAAAACACAGAA-----AAAC--TATATATATATTGATTATCGCATGACGC-------AC----------------------------------------------------GTGTTTTGATAAT--GCCC-A---------------------------------------------ATGTAT------------------------GTGACAGTACTCATAATTTGTATTTTTTTACTTTCT----TTCCAAAGTGCTCCCAACATTCGCACACAGAAATCGGTCCG---GCGCGACGAAAAAGCAT
droVir3 scaffold_12963:14803149-14803550 + dvi_11946 GCTATGACAATCCCGCGTTCGAGCAGAATCCCAGACGCAAAATATCGCAGGTGAGTT----GTCAA----------------------------------------GTTGTCAGCTTGCCATCGACTGCGGCTGTCG------------------------------------------TTAA------------------------------------------------TG--GTGCAG----TTGGCGCCGATTGCGATTGCGATCCAACACTGGCTAAT------GGGCTCGTA--AATTGTGGATT-TGTGTG--------------T--T-----ATTTACGTGCTGCCCATAAACATGGGAATCGACTGTCGTAGCACAAAACCCCAATATTGATAATTTCTTGGCCAAAGCGCG-----ATAT--------------GGGCGCA-----------------------CA----------------------------------------------------------------------------------------------------GATAAT--CGTC--TGGGATTTCAGAACAAGCAATAAATGTCTAATCTTTTCAACATTA------------------------------TTTT-----TTTTGTTTTT------G--TT--TTCCAATTC-ATTTAGACTTCGACACATTCGCACAGCGAAATCGGACCA---TCCCGCAGAAGGAGCAT
droMoj3 scaffold_6500:17762177-17762538 + ----TGATAATCCCGCCTTTGAGCCAGTCTATATGCGTAAGATATCGCAGGTGAGTT----GGGG------------------------------------------------------------------TTGTTTAACGATTAACGACTTGCTTGATTGACCGTAAAGTTGTTGATTGAATAAGTGTGCTCGTAACATTCGTTCTACATCCCCTATATATGTGTGAG-TGC--ATTCATTA-AATGACGG------CATCTATAATG---------------------------------------------------------------------------------------------------------ATGCT-----------CG---TAA--------------------T-----------------------------------------------TGCTGAAATGAT------------------------------CCGTGTGATCA-------AGTGATAAAAGATCAAGTGATCAAGCCACAAGGGTTTTACGCGCAA----------------------TATT------------------------------CAGTAATG------------------------------CTCAAAACAAATTCGATTT------C--GA--TT------CGCGACAGACCTCAATACATTCATACCTCGACAATGGACCGCTTGGGCGCAGGAGAAGCAT
droGri2 scaffold_15126:4561436-4561775 - GTTACGACAATCTCGCCTATGAGCAAAATCCCAGACGCAAAATATCCCAGGTGAGTT----GTCG-----------------------------------------------------TCATC-------GTTGGCG------------------------------------------TTAA------------------------------------------------CG--TTT-TGCA-ATTGGCGTCAATTGCGATTACGATCAAT--TG-------------GGGGTCGTA--AATTCG-GATTTGA-GTG--------------T--T-----TATTAAGTGTTGCCCATAAGCGCAAGAGCCGACAATCG-----------CA---TATTGA--------------TAATTT------C--T--------------TGGCAAC-----------------------CGTCCACGTATC-------------------------------A--------GC-------------------------------------------TGATAGATAAT--CGCC--TGGGATTTCAAAAGATGTAATAAA-------------TA------------------------------------CCAAAATTTCTTTCAAATT------A--TA--TT--------GTGTAGACCTCGACACACTCGCACACAGAGATCGGGCCA---TCGAGAAGGCGGAGTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----CT-------------------------------------------------------------------GTTGGCT------------------------------------------ATAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------CGATTGCGATCATT--CCGCTTGTTGG-T--TGCATCGTA--AAAACG-GATTTTCCATG--------------T--ACT-----------ACTGGCCAT--------------ATAATCG-----------CC---TAATGA--------------AA-TATAT----ATAT--ACATATGTATATGGGCACA-----------------------CGCTTGTGAACC---------------------------------------AGC------------------------------------------------GATAAC--GTAT--TGTTATT------------------------------TA------------------------------------ACAAAATTAATCGCGATTT------G--TA--TTAC----CATCGCAGACTTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACACATTCGCACACGGACA............................2111.00100000000000010000
................CTATGAGCAAAATCCGAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACACATTCGCACACGGACA............................2211.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACACATTCGCACACGGA..............................2211.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACCG---GCGCGAAGGAAGA....2211.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGGACATTGGACCG---GCGCG............2211.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGGACATTGGACCG---GC...............1911.00100000000001000000
droSec2
GATACGATAATCTCGCCTACGAGCAAAACCCGCGGCGTAAAATTTCACAGGTGAGTG----CT-------------------------------------------------------------------GTTGGCT------------------------------------------ATAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------CGATTGCGATCATT--CCGCTTGTTGG-T--TGCATCGTA--AAAACG-GATTTTCCATG--------------T--ACT-----------ACTGGCCAT--------------ATAATCG-----------CC---TAATGA--------------AA-TATATGTGTATAT--------------GGGCACA-----------------------CGCTTGTGAACC---------------------------------------AGC------------------------------------------------GATAAC--TTAT--TGTTATT------------------------------TA------------------------------------ACAAAATTAATCGCGATTT------G--TA--TTAC----CATCGCAGACTTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGACCG---GCGCGAAGGA.......2012.0020020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACACATTCGCACACGGA..............................1911.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCG---GCGCGAAGGAAGAG...1811.0010010
.............................................................................................................................................................................................................................................................................ATT--CCGCTTGTTGG-T--TGCATCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..................ACGAGCAAAACCCGCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................GGCGTAAAATTTCACAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........AATCTCGCCTACGAGCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----CT-------------------------------------------------------------------GTTGGCT------------------------------------------ATAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------CGATAGCGATCATT--CCGCTTATTGG-T--TGCATCGTA--AAAACG-GATTTTCCATG--------------T--ACT-----------ACTGGCCAT--------------ATAATCG-----------AC---TAATGA--------------AAATATATGTATATAT--------------GGTCACA-----------------------CGCTTGTGAACC---------------------------------AGTGCCAGC------------------------------------------------GATAAC--GTAT--TGTTATT------------------------------TA------------------------------------ACAAAATTAATCGCGATTT------G--TA--TTAC----CATCGCAGACTTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........ATCCCGCCTATGAGCAAAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000001000000000000000000000000000000000
..TACGATAATCCCGCCTATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000
...ACGATAATCCCGCCTATGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACCG---GCGCGAAGGAAGA....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACCG---GCGCGAAGGAAG.....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACACATTCGCACACGGA..............................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACACATTCGCACACGGA..............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
..........TCCCGCCTATGAGCAAAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.............CGCCTATGAGCAAAATCCGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACACATTCGCACACGGA..............................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
........AATCCCGCCTATGAGCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................CAAAATCCGAGGCGTAAAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..............................CGAGGCGTAAAATTTCACAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACACATTCGCACACGGACATTGGA.......................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACCG---GCGCGAAGGAAGAG...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................AGCAAAATCCGAGGCGTAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................ATGAGCAAAATCCGAGGCGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTATGAGCAAAATCCGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCCGAGGCGTAAAATTTCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAACC---------------------------------AGTGCCAGC------------------------------------------------GATA..........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GAGCAAAATCCGAGGCGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................CTATGAGCAAAATCCGAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGACATTGGACCG---GCGCGAAGGA.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AGGCGTAAAATTTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGACCG---GCGCGAAGGAAG.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACACGGACATTGGACCG---.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTTCCATG--------------T--ACT-----------ACTGGCCAT--------------A..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGGACATTGGACCG---GCGCGAAGG........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCACACGGACATTGGACCG---GC...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GTA--AAAACG-GATTTTCCATG--------------T--................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCG---GCGCGAAGGAAGAG...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ATT--CCGCTTATTGG-T--TGCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGCAGACTTCCACACATT........................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCGCGATTT------G--TA--TTAC----CATCG........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGACCG---GCGCGAAGGAA......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATTGGACCG---GCGCGAAGGA.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................GCAAAATCCGAGGCGTAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CCTATGAGCAAAATCCGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATTCGCACACGGACATTG.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CCGAGGCGTAAAATTTCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AATCCCGCCTATGAGCAAAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACACATTCGCACACGGA..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATAATCCCGCCTATGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCG---GCGCGAAGGAAGAGC..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........ATCCCGCCTATGAGCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGGACATTGGACCG---GCGC.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......ATAATCCCGCCTATGAGCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGGACCG---GCGCGAAGGAA......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TAATCCCGCCTATGAGCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGACCG---GCGCGAAGGA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATTGGACCG---GCGCGAA..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................ATGAGCAAAATCCGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATACGATAATCCCGCCTATGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GCTTATTGG-T--TGCATCGTA--AA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
droEre2
GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----CA-------------------------------------------------------------------GTTGGCT------------------------------------------GTAT------------------------------------------------CA--ATTCATAA-ACCGCCAG------CTATTGCGATCGTT--CAGCTTGTCGG-G--TGCATCGTA--AAAACA-GAT-------G--------------C--A--------------CT-GCCAT--------------ATAAT-------------CC---TAATGA--------------AAATAT------ATAT--------------G-GCACA-----------------------CGTTTGTGAACC-------------------------------ATAACGTTACC------------------------------------------------AATAAC--GCA---TGTTATC------------------------------TA------------------------------------ACCAAATGAATCTCCATTC------G--TA--CTCC----CAACGCAGACTTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................TATGAGCAAAATCCGAGGCGTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACACATTCGCACACGGA..............................1911.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCGCACACGGACATT..........................1811.0011000000
....................................................................................................................................................................................................................................................................................................ATCGTA--AAAACA-GAT-------G--------------C--A--------------CT-GCCAT--------------...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
droYak3
GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----CC-------------------------------------------------------------------GTTGGCC-----------------------------------GTTGACTATAT------------------------------------------------CA--ATTCATTA-ACCGCCGG------CGATTGCGATCATT--CCGCTTGTTGGGTGGTGCATCGTA--AAAACG-GATTTTCCATG--------------T--A--------------CT-GCCAT--------------ATAATCT-----------GC---TAATGA--------------AAATAT------ATAT--------------GGGCACA-----------------------CGCTTGTGAACC---------------------------------AGTGCTACC------------------------------------------------GATAAC--GTAT--GGTTATT------------------------------TA------------------------------------ACTGAATTAATCTATATTC------G--TA--TTCG----GATTGCAGACCTCCACACATTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACCG---GCGCGAAGGAAGAGC..24110.001000100010008
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGACCG---GCGCGAAGGAAGAGC..2513.00300300000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGGACCG---GCGCGAAGGAAGAGC..2613.00330000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCG---GCGCGAAGGAAGAGC..1911.00100010000000
.ATACGATAATCCCGCCTATGAGCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTC------G--TA--TTCG----GATTGCAG.....................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGGACATTGGACCG---GCGCGAAGG........2711.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGACCG---GCGCGAAGGA.......2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC------G--TA--TTCG----GATTGCAGACCT.................................................2411.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACACATTCGCACACGGA..............................2211.00100100000000
................CTATGAGCAAAATCCGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGACCG---GCGCGAAGG........1911.00100000010000
................CTATGAGCAAAATCCGAGGCGTAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.................TATGAGCAAAATCCGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..TACGATAATCCCGCCTATGAGCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
droEug1
--TACGATAATCCCGCCTACGAGCAAAATCCAAGGCGTAAAATTTCACAGGTAAGCA--TGCA--G----------------------------------------------------------------GGAGGAC------------------------------------------TTAG------------------------------------------------CA--ATTCATTA-TTAGCTGG------CTATTGTGATTATT--TCGGTTGATAG-T--TGCATCGTA--AAAACG-GATTTTCTATG------------TGC--A--------------CTGGCCAT--------------ATAATCT-----------CT---TAATGA--------------AAGTATA-----TTAT--------------TGTCACA-----------------------CGGTCGTAGACT---------------------------------TGTGCTAGC------------------------------------------------GATAAC--GGTT--TGTTATT------------------------------CA------------------------------------GTGAAAATAACTTCGATTG------G--TA--TTCC----CTTCGCAGACTTCCACACACTCGCACACGGATATTGGCCCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotal
No Reads
droBia1
GATACGATAATCCCGCCTATGAGCAAAACCCGAGGCGCAAAATTTCACAGGTGAGTG----GG-------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------A--GTTCATTA-GACGACGG------CGATTGCGAT---------------GG-G--TGCATCGTA--AAAACG-GATTTT-----------------------------------------------------------------------------CC---TAATGA--------------AAATAT------TTAT--------------GGGCTCA-----------------------CGCTC-AGTAGT---------------------------------T--------------------------------------------------------GATACC--GTTT--CGTCGTT------------------------------CA------------------------------------GTCGGAATAACCTCGATTC------G--CA--TTCC----CATCGCAGACCTCCACACACTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotal
No Reads
droTak1
GATACGATAATCCCGCCTATGAGCAAAATCCGAGGCGTAAAATTTCACAGGTGAGTG----GA-------------------------------------------------------------------AGT----------------------------------------------GGAG------------------------------------------------AG--GTTCATTA-GACGCCGA------CGATTGCGATCAAT--TCGGTTGATGG-G--TGCATCGTA--AAAACG-GATTTGGC-TGTG------------T--T--------------C----TAG--------------CTAATCT-----------CT---TAATGA--------------AAATAT------ATAT--------------GGGCAAA-----------------------C-----------------------------------------------------------------------------------------------------GATAAC--AGTT--CGTCATT------------------------------CA------------------------------------GTTGGAATAACCTCGATTC------G--TA--TTCT----CATCGCAGACCTCCACGCACTCGCACACGGATATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotal
No Reads
droEle1
GCTACGATAATCCCGCCTATGAGCAAAACCCGAGGCGTAAAATTTCACAGGTGAGTG----GGGC------------------------------------------------------------------------------------------------------------------GGAG------------------------------------------------CA--ATTCATTA-GTCGCTGG------CGATTGCGATAAAT--CGGC-------------AATCGTA--AAATCG-GATTTTCCGTG--------------T--A--------------CTGGCCAT--------------ATAATCT-----------CC---TAATGA--------------AAATAT------ATAT--------------GAGCAAA-----------------------CGCTT-CGCACT---------------------------------TGTGTTGGC------------------------------------------------GATAACACGGTT--TGGCATT------------------------------CA------------------------------------CCTAAAATACCCTCTATTC----CGA--AA--ATCC----CATCGCAGACCTCCACACACTCGCACACGGATATAGGACCT---GCGCGCAGGAAGAGCATSizeHit CountTotal NormTotal
No Reads
droRho1
GATACGACAATCCCGCCTACGAGCAAAACCCGAGGCGTAAAATTTCACAGGTGAGTG----GAAG------------------------------------------------------------------------------------------------------------------GTAG------------------------------------------------CG--ATTCATTA-GTCGCTGT------CAATTGCGATCATA--TCGGTTGATGA-G--GGCATCGTA--AAATCG-GATTTTCAGTG--------------T--A--------------CCGAGTAT--------------ATAATCT-----------CC---TAATGA--------------AAATAT------ATAT--------------GGGCACA-----------------------CGCTT-TGCACT---------------------------------TGTGTTAGC------------------------------------------------GATAAC--AGTC--TGGCATT------------------------------TA------------------------------------CCCAAACTAACCCTGCTCC------G--TA--ATCC----CATCGCAGACTTCCACACACTCTCACACGGATATAGGACCA---GCTCGCAGGAAGAGCATSizeHit CountTotal NormTotal
No Reads
droFic1
GATACGATAATCCCGCCTACGAACAGAACCCGAGGCGTAAAATTTCACAGGTGAGTG----TGCT------------------------------------------------------------------------------------------------------------------GTCG------------------------------------------------GA--ATTCATTA-GTCGCTAC------CGATTGCGATTGTT--TCGGCAAATAC-G--TA---CGTAATAAAACG-GATTTTTTGTG--------------C--T--------------CCGCTCGT--------------ATAATCT-----------CG---TAATGA--------------AAATAT------ATATAC--G---------GGGCGAA-----------------------CGCTT-CGAACT---------------------------------TGTGTTAAC------------------------------------------------GATAAC--GGTC--TGTCGTT------------------------------CG------------------------------------GGTTAAATAACTCTGATTT------T--TG--TCAA----CACCGCAGACTTCCACACACTCGCACTCGGATATTGGGCCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotal
No Reads
droKik1
GATACGATAATCCCGCTTATGAGCAAAACCCGAGACGTAAAATTTCACAGGTGAGTG----GC-------------------------------------------------------------------GG----C------------------------------------------GTAG------------------------------------------------CG--AATCGGTAGAGCGATTG------CGATTGCGATCATT--TCGCTTGATGG----GGCATCGTA--AAATAG-GATTTTC-GCG--------------T--G--------------CGGGACAT--------------GCAATCT-----------CC---TAATGA--------------AAATAT------ATATACGTATATGTATA-----------------------------------T-GGAACGAGCTTTGATTATTGGCTGAGTT-------AC----------------------------------------------------GCGTGAAGATAAG--AGTA--TACCA---------------------------------G------------------------------------GCTAAAATAACTTCAAATC------C--TA--TTCT----TGCCGCAGACCTCCACACACTCGCACAGCGATATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotal
No Reads
droAna3
--TACGATAATCCCGCCTATGAGCAGAACCCCAGGCGGAAAATTTCACAGGTGAGAG----CTCG------------------------------------------------------------------------------------------------------------------GGTG------------------------------------------------CC--GTGTGGTT-GTTGATTA------CAATTGTGATCAGT--TCGTTCGATTGGTG-GGCATCATA--AAATCG-GATTTTGTTTG--------------G--C--------------CTGTTCGT--------------TTAATCT-----------CC---TAATGA--------------AAACGG------TCGT--------------TTGCGTA-----------------------CATTT-TGTACTTGGGTTGATTATCGGATCAGTT-------TCA---------------------------------------------------GACCGAAGATAAC--GAAG--TG-------------------------------------------GGTGGGTTAAAAATAAGTATAGACTCTAGAATAAAATGA-------------------AA--TTTC----CCCAACAGACATCCACACACTCGCACACGGATATCGGGCCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACACACTCGCACACGGATAT...........................2211.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCGCACACGGATATCGGGCCG---GC...............2711.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACGGATATCGGGCCG---GC...............2111.001010000
..................ATGAGCAGAACCCCAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACACACTCGCACACGGATATCG.........................2611.001010000
............CCGCCTATGAGCAGAACCCCAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCACACACTCGCACAC.................................1911.001010000
droBip1
GATACGATAATCCCGCCTATGAGCAGAACCCCAGGCGGAAAATTTCACAGGTGAGAGTGTGCT---------------------------------------------------------------------CGGGT------------------------------------------GTGC------------------------------------------------CG---TGTGGTT-GTTGATTA------CAACCGTGATCAGT--CGGTTCGATTGGCG-GGCATCGTA--AAATCG-GATTTTGTGAG--------------G--A--------------CTGTTCGT--------------TTAATCT-----------CC---TAATGA--------------AAATAG------TCGT--------------TTGCGTA-----------------------CATTT-TGTACCTGCCTTGATTATCGGATGAGTT-------TCA---------------------------------------------------GTTCGAAGATAAC--GAAATC---------------------------------------------GGCGGGTTAAAAATAAG-------TCTTGAATAAAACG-----------------A--AA--TTTC----CCCGACAGACCTCCACACACTCTCACTCGGATATCGGGCCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotal
No Reads
dp5
GATACGATAACCCCGCCTTTGAGCAAAATCCTAGGCGTAAAATTTCACAGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATTA------CGATTACGATCAAT--AGGT-----------GAGATTGTA--AATTTG-GATTTTGTGTG--------------T--GCTTAGATTTACGCGGTAGCCAT--------------AAATACT-----------CG---TAA---------------------------------------------------------------AATGTTGCTCA---TATT--TCTGCTTTTATTGATTATCGGATGACGTCGTGCGATC----------------------------------------------------GTGAAAAGATAAC--GACAGA---------------------------------------------GAGTGA------------------------TTGAAAATAACCTCGAATTATATTTA--TA--TTGG----AATTACAGACCTCCACACACTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................TTACGATCAAT--AGGT-----------GAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACCG---GCGCGAAGG........1811.0010100000000
....................................................................................................................................................................................................................................................................ATTACGATCAAT--AGGT-----------GAGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------------------TTGAAAATAACCTCGAA....................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACCG---GCGCGAAGGAAGAG...2311.0010100000000
.........................................................................................................................................................................................................................................................TTA------CGATTACGATCAAT--AGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTATCGGATGACGTCGTGC.............................................................................................................................................................................................................................................................2211.0010100000000
droPer2
GATACGATAACCCCGCCTTTGAGCAAAATCCTAGGCGTAAAATTTCACAGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATTA------CGATTACGATCAAT--AGGT-----------GAGATTGTA--AATTTG-GATTTTGTGTG--------------T--GCTTAGATTTACGCGGTAGCCAT--------------AAATACT-----------CG---TAA---------------------------------------------------------------AATGTTGCTCA---TATT--TCTGCTTTTATTGATTATCGGATGACGTCGTGGGATC----------------------------------------------------GTGAAAAGATAAC--GACAGA---------------------------------------------AAGTGA------------------------TTGAAAATAACCTCGAATTATATTTA--TA--TTGG----AATTACAGACCTCCACACACTCGCACACGGACATTGGACCG---GCGCGAAGGAAGAGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCGCACACGGACATTGGACCG---GCGC.............2913.003300000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACTCGCACACGGACATTGGACC.....................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTATCGGATGACGTCGT...............................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGACCG---GCGCGAAGGAAGAGC..2511.001100000
............................................................................................................................................................................................................................................................................................................AATTTG-GATTTTGTGTG--------------T--................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTCCACACACTCGCACACGGAC.............................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACTCGCACACGGA..............................1820.501100000
droWil2
GCTATGACAATATTGCCTATGAGCAAAATCCGCGTCGAAAAATTTCACAGGTGAGAT----GGTTGGCGGGACAGAGAAGGATTTTAAGTGGACTAGACTTGTGGCGTACCCACATT-----------------------------------------------------------------------------------TCAGTCAATTGCCCCCATCCATGTGCATGGCGCTGCTTCGGTA-ACTGGCTGCTATTGCTATTATAATTAAC--TTGCTCGTTGG-GG-TCCCCCATA--AATTTG-GATTTAGT-CGCATTCGCCTATATGCCCACATATATATACGATT--------------------------------------------TAATGA--------------CAA---------------------------------AACTCTATAAAACACAGAA-----AAAC--TATATATATATTGATTATCGCATGACGC-------AC----------------------------------------------------GTGTTTTGATAAT--GCCC-A---------------------------------------------ATGTAT------------------------GTGACAGTACTCATAATTTGTATTTTTTTACTTTCT----TTCCAAAGTGCTCCCAACATTCGCACACAGAAATCGGTCCG---GCGCGACGAAAAAGCATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........AATATTGCCTATGAGCAAAATCCGCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAATCGGTCCG---GCG..............2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------------------------------------------------GTGTTTTGATAAT--GCCC-A---------------------------------------------AT.................................................................................................................................2211.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACACAGAAATCGGTCCG---GCGC.............2411.00100100
................................................................................GATTTTAAGTGGACTAGACTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAATCGGTCCG---GC...............1911.00100010
..............GCCTATGAGCAAAATCCGCGTCGAAAAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100100
.....GACAATATTGCCTATGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAATCGGTCCG---GCGCGAC..........2411.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAATCGGTCCG---GCGCGA...........2111.00110000
......................GCAAAATCCGCGTCGAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
............................TCCGCGTCGAAAAATTTCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
.............TGCCTATGAGCAAAATCCGCGTCGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAATCGGTCCG---GCGCGACGAA.......2611.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--GCCC-A---------------------------------------------ATGTAT------------------------GTGACAGT.............................................................................................2211.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAATCGGTCCG---GCGCGACGA........2511.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAATCGGTCCG---GCGC.............2111.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACACAGAAATCGGTCCG---GC...............2211.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGAAATCGGTCCG---.................1911.00110000
droVir3
GCTATGACAATCCCGCGTTCGAGCAGAATCCCAGACGCAAAATATCGCAGGTGAGTT----GTCAA----------------------------------------GTTGTCAGCTTGCCATCGACTGCGGCTGTCG------------------------------------------TTAA------------------------------------------------TG--GTGCAG----TTGGCGCCGATTGCGATTGCGATCCAACACTGGCTAAT------GGGCTCGTA--AATTGTGGATT-TGTGTG--------------T--T-----ATTTACGTGCTGCCCATAAACATGGGAATCGACTGTCGTAGCACAAAACCCCAATATTGATAATTTCTTGGCCAAAGCGCG-----ATAT--------------GGGCGCA-----------------------CA----------------------------------------------------------------------------------------------------GATAAT--CGTC--TGGGATTTCAGAACAAGCAATAAATGTCTAATCTTTTCAACATTA------------------------------TTTT-----TTTTGTTTTT------G--TT--TTCCAATTC-ATTTAGACTTCGACACATTCGCACAGCGAAATCGGACCA---TCCCGCAGAAGGAGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGACCA---TCCCGCAGAAGGAGC..2511.001000000000000000000000000000000000000100000000000000000000000000
........AATCCCGCGTTCGAGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACAGCGAAATCGGACCA---TCCCG............2511.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------TTTT-----TTTTGTTTTT------G--T........................................................................17200.051000000000000000000000000000000000000000000000000000000000000001
droMoj3
----TGATAATCCCGCCTTTGAGCCAGTCTATATGCGTAAGATATCGCAGGTGAGTT----GGGG------------------------------------------------------------------TTGTTTAACGATTAACGACTTGCTTGATTGACCGTAAAGTTGTTGATTGAATAAGTGTGCTCGTAACATTCGTTCTACATCCCCTATATATGTGTGAG-TGC--ATTCATTA-AATGACGG------CATCTATAATG---------------------------------------------------------------------------------------------------------ATGCT-----------CG---TAA--------------------T-----------------------------------------------TGCTGAAATGAT------------------------------CCGTGTGATCA-------AGTGATAAAAGATCAAGTGATCAAGCCACAAGGGTTTTACGCGCAA----------------------TATT------------------------------CAGTAATG------------------------------CTCAAAACAAATTCGATTT------C--GA--TT------CGCGACAGACCTCAATACATTCATACCTCGACAATGGACCGCTTGGGCGCAGGAGAAGCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTTACGACAATCTCGCCTATGAGCAAAATCCCAGACGCAAAATATCCCAGGTGAGTT----GTCG-----------------------------------------------------TCATC-------GTTGGCG------------------------------------------TTAA------------------------------------------------CG--TTT-TGCA-ATTGGCGTCAATTGCGATTACGATCAAT--TG-------------GGGGTCGTA--AATTCG-GATTTGA-GTG--------------T--T-----TATTAAGTGTTGCCCATAAGCGCAAGAGCCGACAATCG-----------CA---TATTGA--------------TAATTT------C--T--------------TGGCAAC-----------------------CGTCCACGTATC-------------------------------A--------GC-------------------------------------------TGATAGATAAT--CGCC--TGGGATTTCAAAAGATGTAATAAA-------------TA------------------------------------CCAAAATTTCTTTCAAATT------A--TA--TT--------GTGTAGACCTCGACACACTCGCACACAGAGATCGGGCCA---TCGAGAAGGCGGAGTATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................AAT--TG-------------GGGGTCGTA--AATTCG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTCGACACACTCGCA....................................1911.00110

Generated: 05/18/2015 at 11:21 PM