ID:

dsi_8988

 Coordinate:

2r:5314517-5314666 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.9 -7.7 -7.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAGCAAATGATGGACGATCGAAGATTCGTGATCTGGGCCGGCAGGATTTGGTATTTATGACTACTATTGCACTTGCTACCAAGCTAACGACCCACCTACTCCACCATCAACCTCAGCATTACTAAGTATATCCCAGGCAGTGTAAAAGCGTATCATGCTACCAACCATATTGTCAATATCCTATGAGCATATATCGTTAGATCGTAAGTGTCTTTGCAGGCCCACCAACAATCCAATCCAAACCAAACCA
***************************************************************************************........................((((....................((((((((...(((((...))))).......)))))))).........))))....*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
.........................................................................................................................................................................................AGCATATATCGTTAGATC............................................... 18 0 1 6.00 6 6 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCGTTAGATCGGAAGTTTTTTT................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
................ATCGACGATTCGTGATCTGTGCC................................................................................................................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.........ATGGACGATCGAAGAT................................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................AAAGCGGATCAAGCTACCA....................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0
................................CTGGGCCGGCAGGATTTG........................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATCCTATGAGCATATATCGTTAGATC............................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................AGATTCGTGACATGGGCCG.................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0
........................TTCGTGATCTGTGCCGGCAGGA............................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............GACGATCGAAGATTCGTGATCTGGGCC................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................CGACCCACCTACTCCACCATCA............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCGTTAGATCGGAAGTGT....................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................GACGATTCGTGATCTGTGCC................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................ATTGTCAATATCCTATGAGCATA........................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................AGATTCGTGACATGGGCC................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0
.......................ATTCGTGATCATGACCGGCA............................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTTTCCGGGCCCACCA....................... 17 2 10 0.10 1 0 0 0 0 0 0 1 0 0
............GACGATCGAAGGCTCGTC............................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0
...CAAATGATTGACGAT........................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
...................................................TATCTAGGACTACCATTGCA................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..GCAGATGATGGACGATTTA..................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTCGTTTACTACCTGCTAGCTTCTAAGCACTAGACCCGGCCGTCCTAAACCATAAATACTGATGATAACGTGAACGATGGTTCGATTGCTGGGTGGATGAGGTGGTAGTTGGAGTCGTAATGATTCATATAGGGTCCGTCACATTTTCGCATAGTACGATGGTTGGTATAACAGTTATAGGATACTCGTATATAGCAATCTAGCATTCACAGAAACGTCCGGGTGGTTGTTAGGTTAGGTTTGGTTTGGT
***********************************************************........................((((....................((((((((...(((((...))))).......)))))))).........))))....*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
..............................................................................GGTTGAATTGCTTGGTGGATG....................................................................................................................................................... 21 3 1 4.00 4 3 1 0 0 0 0 0 0
............................................................................................................................................................................................................................GGGTGGTTGTTCGATTAG............ 18 2 6 0.83 5 0 0 0 4 0 0 1 0
...................................................................................................................................................................................................................................TGTTGGGTTAGGTTTGTTTTG.. 21 2 3 0.67 2 0 0 2 0 0 0 0 0
............................................................................................................................................................................................................................GGGTGGTTGTTCGATTAGGCTT........ 22 3 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................................................TGACTCATATAGGGTCTGTT.............................................................................................................. 20 3 3 0.33 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................GGTGGTTGATGGATTAGGTT......... 20 3 9 0.33 3 2 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGTGGTTGATCGATTAGGTT......... 20 3 4 0.25 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GGGTGGTTGTTCGATTAGCTT......... 21 3 6 0.17 1 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................TTTTTGGGTTAGGTTTGTTTTGGT 24 3 6 0.17 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGTGGTTGTTCGATTAGGC.......... 19 3 15 0.13 2 0 0 0 0 0 2 0 0
...............................................................................................................GAGTCGGAATGGTTC............................................................................................................................ 15 2 20 0.10 2 0 2 0 0 0 0 0 0
............................................................................................CTGGCTGAGGTGGTAGT............................................................................................................................................. 17 2 16 0.06 1 0 0 0 0 1 0 0 0
..............................................................................GGTTGAATTGCTTGGTGGA......................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................GGGTGGTTGATCGATTAGG........... 19 3 20 0.05 1 0 1 0 0 0 0 0 0
.............................................................................GGGCTCGATTGCTGGG............................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
.............................................................................AGGTACGATTGCTGGG............................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 12:53 PM