ID:

dsi_8963

 Coordinate:

2l:22434204-22434353 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.3 -9.2 -8.7 -8.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+

Sense Strand Reads

GGCTAAATCGACTTTGCTATTGATCCTGATCAAGAATATATATACTTTATCTAGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAACGATATGCCAGAAAAATTTATCGTTCGTAAATATTGTTACTTATAAGCATCGTTGCCATTTTATCGCTCTTCCAATGTTATAATGTTATATTGCAATTTAAATTTCAGGGAGCCGGCAATTTAAGCTTCAACAACATAGATCAAGATCATATGCCCAA
**************************************************...............................((.......(((((((.............))))))).......)).*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M024
male body		 O001
Testis
 O002
Head
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.................................GAATATATATACTTTATCTAGTCGG................................................................................................................................................................................................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................AATTTATCGTTCGTAAATATT........................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................TACTTTATCTAGTCGGAAACGCTTCCTT.................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATTGTTACTTATAAGCATCGTTGCC..................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TTTAAGCTTCAACAACATAGATCAAGA............ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TATCGTTCGTAAATATTGTTACTTA................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................CTAGTCGGAAACGCTTCCTTCTGC................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................GAATATATATACTTTATCTAGTCGGA............................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................CAAGAATATATATACTTTATC....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................TGCCAGAAAAATTTATCGTTCGTAAA............................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................CTGGCTGTTACATACTTTTCAACGATA......................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................CTGCCTGTTACATACTTTTCAACGA........................................................................................................................................................... 25 0 20 0.55 11 11 0 0 0 0 0 0 0 0 0 0
.............................................................................TTACATACTTTTCAACGAT.......................................................................................................................................................... 19 0 11 0.55 6 0 0 0 0 0 0 0 6 0 0 0
......................................................................CTGCCTGTTACATACTCTTCAACGAT.......................................................................................................................................................... 26 1 9 0.33 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCTGCCAATGTTATGATGT........................................................................ 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.................................................TCTAGTCGGAAACGCTACCT..................................................................................................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................TCCTTCTGCCTGTTACATACTTTTCAAC............................................................................................................................................................. 28 0 20 0.25 5 2 1 0 2 0 0 0 0 0 0 0
.................................GAATATATACACTTTATCTAGTCGGA............................................................................................................................................................................................... 26 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................CTGCCTGTTACATACTTTTCAACGAT.......................................................................................................................................................... 26 0 8 0.25 2 1 0 0 0 0 0 0 0 0 1 0
.......................................................................TGCCTGTTACATACTTTTCAACGAT.......................................................................................................................................................... 25 0 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................TGCCTGTTACATACTCTTCAACGAT.......................................................................................................................................................... 25 1 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0
........CGACTTTGCTATTGATCCAGATCAAGA....................................................................................................................................................................................................................... 27 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
.......TCGACTTTGCTATTGATCCAGATCAAGA....................................................................................................................................................................................................................... 28 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
............TTTGCTATTGATCCAGATCAAGATTT.................................................................................................................................................................................................................... 26 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
..................ATTGATCCTGATCAAGAATATAT................................................................................................................................................................................................................. 23 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
..............TGCTATTGATCCTGATCAAGA....................................................................................................................................................................................................................... 21 0 17 0.12 2 0 0 0 2 0 0 0 0 0 0 0
....................................................................TTCTGGCTGTTACATACTTTTCAACGAT.......................................................................................................................................................... 28 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTCGGGGAGCTGGCAAATTA................................... 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
................................................................TTCCTTCTGCCTGTAACATACTT................................................................................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................TGCCGGTTACATACTTTTCAACGAT.......................................................................................................................................................... 25 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
................................................................TTCCTTCTGCCTGTTACATACTTTTC................................................................................................................................................................ 26 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0
...................TTGATCCTGATCAAGA....................................................................................................................................................................................................................... 16 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
............................................TTTTGCCTAGTCGGAAACGCTTCC...................................................................................................................................................................................... 24 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................ACATACTTTTCAACGAT.......................................................................................................................................................... 17 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................TTCTGCCTGTTACATAATTTTCAACGAT.......................................................................................................................................................... 28 1 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................TTTCGGGGAGCTGGCAATTA.................................... 20 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................TTCTGCCTGTTACATACTTTTCAACGA........................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................CTTCTGCCTGTTACATACT.................................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................TCCTGATCAAGAATATATAT............................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
......................ATCCTGATCAAGAATATATATACTT........................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................CTGCCTGTTACATACTTTTCAA.............................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................CGGCCTGTTACATACTTTTCAACGA........................................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..................ATTGATCCTGATCGAGAATATATATACT............................................................................................................................................................................................................ 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................................................TAGTCGGAAACGCTTCCTTCTGCCT.............................................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.............TCGCTATTGATCCTGATCAAGAATA.................................................................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................CTTCTGCCTATTACATACTTTTCAAC............................................................................................................................................................. 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................TGGCTGTTACATACTTTTCAACGTT.......................................................................................................................................................... 25 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................CGGAAACGCTTCCTTCTGCCTGTTACATACT.................................................................................................................................................................... 31 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................CTTCTGCCTGTTACATACTTTTCAA.............................................................................................................................................................. 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGATTTAGCTGAAACGATAACTAGGACTAGTTCTTATATATATGAAATAGATCAGCCTTTGCGAAGGAAGACGGACAATGTATGAAAAGTTGCTATACGGTCTTTTTAAATAGCAAGCATTTATAACAATGAATATTCGTAGCAACGGTAAAATAGCGAGAAGGTTACAATATTACAATATAACGTTAAATTTAAAGTCCCTCGGCCGTTAAATTCGAAGTTGTTGTATCTAGTTCTAGTATACGGGTT
***************************************************************************************************************************...............................((.......(((((((.............))))))).......)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 O002
Head
 M053
female body
 M025
embryo
 SRR902009
testis
.................................................................AGGAAGACGGACAATGTATGAAAA................................................................................................................................................................. 24 0 20 20.80 416 251 0 165 0 0 0 0 0 0 0 0
................................................................AAGGAAGACGGACAATGTATGAAAA................................................................................................................................................................. 25 0 20 8.90 178 113 0 0 57 0 0 8 0 0 0 0
...........................................................TTGCGAAGGAAGACGGACAATGTAT...................................................................................................................................................................... 25 0 20 6.20 124 0 121 1 0 0 2 0 0 0 0 0
.................................................................................................................................................................................................................TTATATTCGAAGTTGTGGTAT.................... 21 2 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0
.....................................................................AGACGGACAATGTATGAAAAGTTGCT........................................................................................................................................................... 26 0 20 1.55 31 7 0 16 4 0 0 4 0 0 0 0
.............................................................GCGAAGGAAGACGGACAATGTAT...................................................................................................................................................................... 23 0 20 1.35 27 0 27 0 0 0 0 0 0 0 0 0
.................................................................AGGAAGACGGACAATGTATGAAAAGT............................................................................................................................................................... 26 0 20 1.20 24 0 0 0 0 0 24 0 0 0 0 0
................................................................AAGGAAGACGGACAATGTATGAAAAGT............................................................................................................................................................... 27 0 20 1.15 23 21 0 0 2 0 0 0 0 0 0 0
..................TAACTAGGACTAGTTCTTATATATATG............................................................................................................................................................................................................. 27 0 20 1.05 21 0 0 6 3 0 0 0 0 12 0 0
........................................ATATGAAATAGATCAGCCT............................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.CGATTTAGCTGAAACGATAACTAGGAC.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................AGGACTAGTTCTTATATATATGAA........................................................................................................................................................................................................... 24 0 20 0.75 15 0 0 13 0 0 0 0 0 0 2 0
....................ACTAGGACTAGTTCTTATATATATG............................................................................................................................................................................................................. 25 0 20 0.75 15 0 10 0 0 0 0 0 0 0 5 0
.................................................................AGGAAGACGGACAATGTAT...................................................................................................................................................................... 19 0 20 0.65 13 0 13 0 0 0 0 0 0 0 0 0
..................................................................GGAAGACGGACAATGTATGAAAA................................................................................................................................................................. 23 0 20 0.65 13 13 0 0 0 0 0 0 0 0 0 0
...................AACTAGGACTAGTTCTTA..................................................................................................................................................................................................................... 18 0 20 0.60 12 0 12 0 0 0 0 0 0 0 0 0
............................................................TGCGAAGGAAGACGGA.............................................................................................................................................................................. 16 0 20 0.60 12 0 12 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTATATTCGAAGTTGTGGTA..................... 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................ACGGACAATGTATGAAAAGTTGCAAT......................................................................................................................................................... 26 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
................................................................AAGGAAGACGGACAATGTAT...................................................................................................................................................................... 20 0 20 0.50 10 1 9 0 0 0 0 0 0 0 0 0
...............CGATAACTAGGACTAGTTCTTATA................................................................................................................................................................................................................... 24 0 20 0.50 10 0 10 0 0 0 0 0 0 0 0 0
...................................................................GAAGACGGACAATGTATGAAAA................................................................................................................................................................. 22 0 20 0.45 9 0 9 0 0 0 0 0 0 0 0 0
...................AACTAGGACTAGTTCTTATATATATG............................................................................................................................................................................................................. 26 0 20 0.35 7 2 0 2 0 0 1 2 0 0 0 0
.....................................................................................................................................................................TTACAATATTACAATAT.................................................................... 17 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
......TAGCTGAAACGATAACTAGGAC.............................................................................................................................................................................................................................. 22 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................GTAAAATAGTGATGAGGTTAC................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................GGTTGCTATACTGTCTTTT............................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..........TGAAACGATAACTAGGA............................................................................................................................................................................................................................... 17 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................GGAAGACGGACAATGTATGAAAAGT............................................................................................................................................................... 25 0 20 0.30 6 3 0 2 1 0 0 0 0 0 0 0
.....................CTAGGACTAGTTCTTATATATATG............................................................................................................................................................................................................. 24 0 20 0.25 5 0 0 0 0 0 3 0 0 0 0 2
.................................................................AGGAAGACGGACAATGTATGAAAAGTTG............................................................................................................................................................. 28 0 20 0.25 5 4 0 0 0 0 1 0 0 0 0 0
.................................................................AGGAAGACGGACAATGTATG..................................................................................................................................................................... 20 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0
.......................................................................ACGGACAATGTATGAAAAGTTGCTA.......................................................................................................................................................... 25 0 8 0.25 2 0 0 1 0 0 1 0 0 0 0 0
.....................................................CAGCCTTTGCGAAGGAAGACGGACAAT.......................................................................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
....................................................TCAGCCTTTGCGAAGGAAGA.................................................................................................................................................................................. 20 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
.....................................................................AGACGGACAATGTATGAAAAGTTGC............................................................................................................................................................ 25 0 20 0.20 4 0 0 0 0 0 4 0 0 0 0 0
.................................................................................................................................................................................................................TTATATTCGAAGTTGTGGT...................... 19 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................AGGAAGACGGACAAT.......................................................................................................................................................................... 15 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
.................................................................AGGAAGACGGACAATGTATGAAAAGTTGCT........................................................................................................................................................... 30 0 20 0.15 3 0 0 1 2 0 0 0 0 0 0 0
...........................CTAGTTCTTATATATATG............................................................................................................................................................................................................. 18 0 20 0.15 3 0 0 0 0 0 0 0 0 0 3 0
................................................................AAGGAAGACGGACAATGTATGAAA.................................................................................................................................................................. 24 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0
.................................................................AGGAAGACGGACAAGGTATGAAAAGT............................................................................................................................................................... 26 1 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0
...........................................................................................................TAACTAGCAAGCATTTTT............................................................................................................................. 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................CGGACAATGTATGAAAAGTTGCTA.......................................................................................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................GGACAATGTATGAAAAGTTGCTA.......................................................................................................................................................... 23 0 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................GGAAGACGGACAATGTATGAAAAGTTG............................................................................................................................................................. 27 0 20 0.10 2 0 0 1 0 0 1 0 0 0 0 0
.....................................................CAGCCTTTGCGAAGGAAGACGGACAA........................................................................................................................................................................... 26 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATATTCGAAGTTGTGGTAT.................... 19 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
.................ATAACTAGGACTAGTTCTTATATATATG............................................................................................................................................................................................................. 28 0 20 0.10 2 0 0 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................TATATTCGAAGTTGTGGTA..................... 19 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
.................ATAACTAGGACTAGTTCTTATATATA............................................................................................................................................................................................................... 26 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
................................................................AAGGAAGCCGGACAATGTATGAAAAGT............................................................................................................................................................... 27 1 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0
...............................................................GAAGGAAGACGGACA............................................................................................................................................................................ 15 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...............CGATAACTAGGACTAGTTCTTAT.................................................................................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................AGGAAGACGGACAATGTA....................................................................................................................................................................... 18 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
............................................................TGCGAAGGAAGACGGACAATGTAT...................................................................................................................................................................... 24 0 20 0.10 2 0 0 1 0 0 0 0 0 1 0 0
.................................................................AGGAAGACGGACAATGTATGA.................................................................................................................................................................... 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
.................................................................AGGAAGACGGACAATGTATGAAAAGTT.............................................................................................................................................................. 27 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
.................ATAACTAGGACTAGTTCTTATATAT................................................................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................GGAAGCCGGACAATGTATGAAAA................................................................................................................................................................. 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................GGAAGACGGACAATGTA....................................................................................................................................................................... 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATATTCGAAGTTGTGGTA..................... 18 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGTATCCAGTTCAAGTAT....... 18 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TTAAATAGCAAGGATCT............................................................................................................................... 17 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
...........TTAACGATAACTAGGGCTAGTT......................................................................................................................................................................................................................... 22 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
............................................................TGCGAAGGAAGACGGACAATGTATG..................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................AGGAATACGGACAATGTATGAAAAGTTG............................................................................................................................................................. 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................CTAGGACTAGTTCTTATATATATGAAAT......................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
................................................................AAGGAAGACGGACAAT.......................................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................CGAAGGAAGACGGACAATGTATGAAAA................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................AAAGTTGCTCTTCGGGCTT................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...............CGATAACTAGGACTAGTTCTTATATAT................................................................................................................................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................GAAGGAAGACGGACAATGTAT...................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................TTGCGAAGGAAGACGGACAAT.......................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................AGGAAGACGGACAATGTATGAAAAGGT.............................................................................................................................................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................AGGAAGACGGACAAGGTATGAAAAGG............................................................................................................................................................... 26 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................AGGAATACGGACAATGTATGAAAAGT............................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................AGACGGACAATGTATGAAA.................................................................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................AGGACTAGTTCTTATATATATGAAA.......................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................CGGACAATGTATGAAAAGT............................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................GACGGACAATGTATGAAAAGTTGCT........................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.....................CTAGCACTAGTTCTTATATATATGAAAT......................................................................................................................................................................................................... 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................................CCTTTGCGAAGGAAGACGGA.............................................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................AGACGGACAATGTATGAAAAG................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................AAGGAAGCCGGACAATGTATGAAAA................................................................................................................................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TGAAAAGTTGCTATT........................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
................................................................AAGGAAGACGGACAATGTATG..................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............CGATAACTAGGACTAGTTCTTATAT.................................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................TTGCGAAGGAAGACGGACAA........................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............CGATAACTAGGACTAGTTCTTATATATA............................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................GAAGGAAGACGGACAATGTATGAAAA................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................AGACGGACAATGTATGAAAAGTTG............................................................................................................................................................. 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................GGAAGACGGACAATGTATGAAAAGTTGCT........................................................................................................................................................... 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..................TAACTAGGACTAGTTCTTATATATA............................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................................CCTTTGCGAAGGAAGACGGACAATGT........................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................GAAGGAAGCCGGACAATGTAT...................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................CGAAGGAAGACGGACAATGTAT...................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................TAACTAGGACTAGTTCTTATATAT................................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................TTTGCGAAGGAAGACGGACAAT.......................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................AGGACTAGTTCTTATATATATG............................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:22434154-22434403 - dsi_8963 GGCTAAATCGACTTTGCTATTGATCCTGATCAAGAATATA--TATA------CT---TTATCTAGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAA-------CGATAT------GCCAGAAAAATTTATCGTT----CGT---------------------------------------------------------------------AAATATTGTTA-CTTATAAGCA-T-CGTTGCCATTTTATCGCTC--------------------TT--------------------CCA----------------------------------ATGTTATAATGTTATATTGC-------AAT--TTAAATT----------------------------------------------------------TCAGGGAGCCGGC--------A-ATT----------------------------------------------------TAA-------------GCTTCA---------------------------------ACA-ACATAGATCAA--GATCATA----TG----C-CCAA
droSec2 scaffold_104:88336-88553 + GGCTAAATCGACT----------------------------------------T---TTATCTAGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAA-------CGATAT------GCCAGAAAAATTTATAGTT----CGT---------------------------------------------------------------------AAATATTGTTA-CTTATAAGCA-T-CGTTGCCATTTTATCGCTC--------------------TT--------------------CCA----------------------------------ATGTTATAATGTTATATTGG-------AAT--TTAAATT----------------------------------------------------------TCAGGGAGCCGGC--------A-ATT----------------------------------------------------TAA-------------GCTTCA---------------------------------ACA-ACATAGATCAA--GATCATA----TG----C-CCAA
dm3 chr2R:1593042-1593261 - GGCCAGATCGACTTGGCTATTAATCCTGATCAAAAATATA--TATTTATATATTTGATTATATGGTCGGAAACGCTTCCGTCTGCCTGTTGCATACTTTTCAA-------CGACTTCAGAATAAT------T--TA----GCAATGATTTATACTTTCACCTCTCTTTTT-------CCTATCAACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATGCGATCCTATTAGATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGTTAGTTAGC--------G-ATT----------------------------------------------------TTA-------------AG--------------------------------------------------------------------------TTC
droEre2 scaffold_4784:2357606-2357786 - GGCTAGTTCAACTCGGGTCTTGATCGTGATCAAGAATATA--AATA------CT---TTATATAGTCGGAAACGATTCCTTCTGACTGTTACATACTTTTCAA-------AGAATCTAGTATACC------C--T---T------------------------TTACTCT-------ATGAGTAACGGGTATTAT-TATGT-------------------------------------------------------CGC----------------------TT--------------------GTA----------------------------------ATGAAACAAC-------------------------------------------------------------------------------------------------------------------------TTTGGTGTGTT-------CAATTTAAT-------------------------------------------------------------------------------------------------------------TTT
droYak3 v2_chrUn_1715:31606-31883 + GGCCAGATCGACTCGGCTACTGATCCTGATCAAGAATATA--TATA------CT---TTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAA-------CGAATCTAGTATACC------C--T---T------------------------TTACTCT-------ACGAGTAACGGGTATAAT-TATTATGC-----------------ATTATTA-GGTACATAGA-T-TGT-GCT-----ATTATTA--------------------TT--------------------TCT-----------------ATGTTGAATTTAAA--TAA-TTGTAATGTTAA--GGCAATGCAAAAC--TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-ATT----------------------------------------------------TA-------------------------------------TAAAAA----------ATT-ATATAGATTTA--AAGTCT-----------A-AGAA
droEug1 scf7180000409740:16443-16683 - GGCTCAATCGACTTCGCTATTGATCTCGATCAAGAATATA--TATA------CT---TTATAGGGTCGGAAACGCTTCCTTCTTCCTGTTACATACTTTTCAA-------CGTATCTAATATACA------T--A---CT---------------TA------TTACT---------------ATCTTATATAAT-AAGATTT-------------------------G-TTATAGTCA-T-CATAGTTGTTGGGACGC----------------------AT--------------------TAA----------------------------------ATTAC----------------------------------------------------------------------------------------------AAACTTTTGTTATTACAGAA-TGT--TACAGAATT--------GATACAA------------------------------------------GTA------------------AACAAGAAATTCAATTCAAAA-A---------------------------------CA
droBia1 scf7180000301550:27839-28084 + GGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATATA--TATA------CT---TTATGGGGTTCGAAACGCTTCCTTCTGACTGTTACACACTTTCCGA-------CGAATCTAGTATACC------C--T---T------------------------TTACTCT-------ACGAGTAACGGGTATATT-TATTTCACTC-----------------TTT--------------------------------------------------------------------------TTT----------------------------------------TCAGACCATTTTTTTGA-------CAT--TTATATGTT--AGAGTAAT---------------------------------------------------------CC--------G-ATT----------------------------------------------------TGTATTAAATTGAATT------CGAAATTCTTAAAATTATAA--------------------------AA--AATTATA----TT----C-CCAA
droTak1 scf7180000415390:71339-71599 - GGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAATATA--TATA------CT---TTATGGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTTTTGCA-------CGAATCTAATATACC------C--T---T------------------------TTACTCT-------ACGAGTAACGGGTATAAA-AATAGTG--------------------------TTTAAAAACA-T-TCA----------------TGTATTTTCTTATGGTATTA--CT--CC-------------CTCG---------------ATTC-----------------ATTATTATGTTAT------------------------------------------------------------------------------------------------------------------------------T-------CAATTAAATTTAAAAACTAAACACATTAA-------------A-----------------AT-----------------------CTATTAATTA-AACATCAAG----AG----CTCCAA
droEle1 scf7180000490393:1984-2222 + GGCTAGATCGACTCTACTAGTGATGCTGATCAAGAATATA--TATA------CT---TTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCTGAC-------TGAAACTATAATACC------C--T---CTGCAA------------------------------------------GGGTATAAAAAATTATA-------------------------A-C-------T-T-TGCTGCTTTTTAATTTTTT--------------------GT--------------------TCA----------------------------------GTTCTTCGA---CATATAGC-------AATGGTTAAATATTTCAG--AGTT---------------------------------------------------------AT--------G-GTT----------------------------------------------------TAGATTTTATCAAAAT------C--------------------------------------GGACGTCTA--TATCAT---------------AT
droRho1 scf7180000778463:1575-1816 + GGCTAGATCGACTCGGCTAGTGATCCTGAACAAGAATATA--TATA------CT---TTTTAGGGTCGGAAACGCTACCTTCTACCTGTTACATACTTTTGCA-------CGAATACAATATACC------C--T---T------------------------TTACTCT-------ACGAGTAACGGGTATAAA-AATAATA-------------------------A-C-------T-T-TGT----------------TGTTT-----------------------------------------------TTAATTTTTTTTGATTTGATTTTA--------------------------------T--TTAAATTTTATTG--AATT---------------------------------------------------------AC--------G-GTT----------------------------------------------------TAAATTAAATTAAAAT------C--------------------------------------GGACAACAA--TATCATA----TA----G-CTGC
droFic1 scf7180000454015:397472-397702 + ACATATTTCGATTCAGATGGTGATGCTGATCAAGAATATA--TATA------CT---TTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGCAAACTTCTGAC-------TGAAATTATAATACC------CTTTGCTCTGCAA------------------------------------------GGGTATAAT-TATTT-------------------------------AGAAATC-T-ATAC---AT-------------------------------------------------------CGTGT----------------------------------------------------------------------------TAATCTTTGAATTTGCTCTTAAAATTATATATTAAATAACAACTCTTTTCCCAAAGTTTCAAC--------G-TTG----------------------------------------------------TAA-------------AATT-----------------------------------------------------------------------CCAC
droKik1 scf7180000302670:129902-130145 + GGCTATATCGACTCGGCTGTTGATGCTGATCAAGAATATA--TATA------CT---TTATAGGGT-----------CCTTCACTGCGTTGCGAACTTCTGAC-------TGAAATTATAATACC------C--T---G--CAA------------------------------------------GGGTATAAA-AATAT-AATCAGTCAGTCCGACGACAGGTTTG-TTTACAAGTCAT-AATTTATTT---TTCGC----------------------------------------------A----------------------------------A------GCTAATAAGTTTT-------AA---CTAAATTT---------------------------------------------------------TCAGGAA-AA-GT--------A-ACG----------------------------------------------------TAG-------------CGTT----------GCAAAAATAGGA--------------------------AA--AGTCATG----TT----CGCAAA
droAna3 scaffold_12916:15584585-15584818 + GCTCATATCGACTCAGGAGGTGATCTTGATCAAGAATATA--TATA------CT---TTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTTGAC-------CAAAATTATAATACC------T--T---ATGCAA------------------------------------------GGGTATAAC-AATCGCATGA-----------------TTA-------TAAATA-T-T-----------------------------------------------------------A----------------------------------------TCAAA-----------C-------AATCACTAAATAAT--TTA--------------------------------------------------------------C----------------------------------------CAATTTAACTTGGCAAACGGGAATA-TAA-------------TTTT----------TCAAAA-----------------------CTACAGAATA-AAAATCGTA----TA----T-CAAA
droBip1 scf7180000391795:296-488 - GCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATA--TATA------CT---TTATAGGGTCGGAGATGTCTCCTTCACAGCGTTGCACACTTTTGAC-------CAAAATTATAATACC------C--T---CTGCAA------------------------------------------GGGTATAAA-TATCTG-CTT-----------------TTATC-------AGTTGT-CTTCAACAT----------TG----------------------------------------------------------------------------------------------TAC----------------AAG----------------------------------------------------------TTAAAAT----TC--------AAATT--------------------------------------CAAATT--------TAA-------------ACA----------------------------------------AGA------------------------------AAG
dp5 Unknown_singleton_2442:257-510 - GGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATTTA--TATA------CT---TTATGGGGTCGGAAACGACTCCTTCTGGACGATGCACACATCCACTTTTACC-ACAATCTAATATAAT------A--T----------------------------ATACTC-ATT----TTGAGTATCGGGTATTAA-AATAACT-------------------------C-CGA--AGTA-TAAGTTAGCATTTGGTAGT---------------------C--------------------------------CCAACTTGGCTTGATATTACTTTATATAT------------------------------TCGATCT----------------------------------------------------------TTTAGGGACTTGT--------A-A------------------------------------------------------TAA-------------TTTTCT---------------------------------AGA-ACATTGATCGA----------------------TAT
droPer2 scaffold_1019:7182-7460 - GGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATA--TATA------CT---TTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATACACTTTTACCACAAATCTAATATACC------C--C---A------------------------ATACTC-ATT----TTGAGTATCGGGTATAAA-AATTATACTC-----------------TTCCA-------AGTAAT-CTCTTCCAT----------TGTCTATACTTATTGTA-----------------------------------------TTCTTTGTTCTCGTACTA--TAA-TTATC----------------------------ATG----------------------------------------------------------TCAGAAC----AC--------G-ATC-------------------------------------GGCAACT--------AAA-------------ACCGAA---------------------------------AAG-AAATTGGTTG----ATTATTTACATA----G-AACA
droWil2 scf2_1100000004943:13119303-13119531 - GGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATA--TATA------CT---TTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTTGG-------CGACTTTAATATACC------A--T---T------------------------TCACCCT-------ATGGGTGTATGGTATAAA-AACTATT-------------------------G-CC-----------------AT-------------------------------------------------------GATGTTCACAATTTTAGTTGCTG-------------------------------------------------------------------------TTGTTGCAGTT-----------------------------------GC--------A-ATT----------------------------------------------------TAG-------------CCCCCA---------------------------------GCAAATGTGCAACAA--AATCATT----TTCATGC-TCAC
droVir3 scaffold_12855:7489248-7489510 - GGCTAGATCGACTCGGCTATTGATGCTGATCATGAATATA--TAAA------CT---TTATGGGGTCTGAGATGCTTTATTCTGCCTGTTACATGCATTTGGATTTCGCACAAATACAATATACC------C--T---T------------------------ATACCC-ATTTTTAATGGGTTCAGGGTATAAA-AATTCTC-T-------------------------TT-----------------AATTTATAGCTT--------------------TACATTTATTTGATTATATATT----------------------------------------TAAAAATTATTAATTGA-------CAT--TTAAATT----------------------------------------------------------TTTTTGTGCAGGT--------A-TATTTCAATGATTT--------AATACAA------------------------------------------GCT-----------------------------------------------------------------G----A-CAAA
droMoj3 scaffold_6500:30887327-30887565 + GGATAAATCGTCTCAGCTCGTCGCCCTGATCAAGAATATATATATA------CT---TTGTGGGGTCTGCCACGCCTCCTTCTGCCTGTCACATACTTTTAAC--------AATACAAACAAACC------C-----------AGGG--TATAATT-------TT-CCC-ATTTTT-ATGGGTTTTGGGTATAAA-AATGATC-------------------------G-TGG--AACA-C-TAA----------------TATGTTT-----------------------------------------------------AT-------------------------------------------------TTAATGT------------------------T-------TT-----------------------------------GC--------------------------------------------------------------------AATATATCGGG------TAGCAGACTATAAAAA---CTT------AA-----A-----G------TG--GGACATA----CA----C-ATGT
droGri2 scaffold_15245:6665128-6665322 - GGTTACATCGACTCGTCTGCTGATCCTGATCAAGAATATA--TACA------CC---TTATGGGGTCGGATATGCTTCCTTCTGCCTGTTTCACACTATTGCA-------CAAAACAATTATACG------C--T---T------------------------TTTAACC-------ATTTTTAATGGGTTCAAC-AATTACC----------------------------------------------ATTTTACT-----------------------------------------------------------------------A-------------------------------------------------------------------------TCGTCGAAGTT-----------------------------------GC---------------TACAAAGTT---------------------------------------------------------------------------------------------------------GATGGA----TAACAATTAAA----A-TTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCTAAATCGACTTTGCTATTGATCCTGATCAAGAATATA--TATA------CT---TTATCTAGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAA-------CGATAT------GCCAGAAAAATTTATCGTT----CGT---------------------------------------------------------------------AAATATTGTTA-CTTATAAGCA-T-CGTTGCCATTTTATCGCTC--------------------TT--------------------CCA----------------------------------ATGTTATAATGTTATATTGC-------AAT--TTAAATT----------------------------------------------------------TCAGGGAGCCGGC--------A-ATT----------------------------------------------------TAA-------------GCTTCA---------------------------------ACA-ACATAGATCAA--GATCATA----TG----C-CCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................GAATATA--TATA------CT---TTATCTAGTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000000002000
..................................................................................................................................AATTTATCGTT----CGT---------------------------------------------------------------------AAATATT..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................TA------CT---TTATCTAGTCGGAAACGCTTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.............................................................................................................................................................................................................................ATTGTTA-CTTATAAGCA-T-CGTTGCC.........................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------------------------------------TAA-------------GCTTCA---------------------------------ACA-ACATAGATCAA--GA.....................2711.00100000010000000000
......................................................................................................................................TATCGTT----CGT---------------------------------------------------------------------AAATATTGTTA-CTTA.........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.............................................................CTAGTCGGAAACGCTTCCTTCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.................................GAATATA--TATA------CT---TTATCTAGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..............................CAAGAATATA--TATA------CT---TTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...................................................................................................................T------GCCAGAAAAATTTATCGTT----CGT---------------------------------------------------------------------AAA......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.................................................................................CTGCCTGTTACATACTTTTCAA-------CGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.5511000000110000000000
........................................................................................TTACATACTTTTCAA-------CGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.55600000600000000000
............................................................................TCCTTCTGCCTGTTACATACTTTTCAA-------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.25500000022000001000
.................................................................................CTGCCTGTTACATACTTTTCAA-------CGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.25200000010100000000
..................................................................................TGCCTGTTACATACTTTTCAA-------CGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.25200000000020000000
..................ATTGATCCTGATCAAGAATATA--T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.15300000030000000000
..............TGCTATTGATCCTGATCAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.12200000002000000000
...........................................................................TTCCTTCTGCCTGTTACATACTTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200000000000020000
...................TTGATCCTGATCAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000020000000000
..........................................................................................ACATACTTTTCAA-------CGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17120.08100000010000000000
...............................................................................TTCTGCCTGTTACATACTTTTCAA-------CGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000000000
..............................................................................CTTCTGCCTGTTACATACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000010000000
.......................TCCTGATCAAGAATATA--TAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000100000000
......................ATCCTGATCAAGAATATA--TATA------CT---T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000001000000
.................................................................................CTGCCTGTTACATACTTTTCAA-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000010000000000
..............................................................TAGTCGGAAACGCTTCCTTCTGCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000001000000
..................................................................CGGAAACGCTTCCTTCTGCCTGTTACATACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................31200.05100000010000000000
..............................................................................CTTCTGCCTGTTACATACTTTTCAA-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
droSec2
GGCTAAATCGACT----------------------------------------T---TTATCTAGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAA-------CGATAT------GCCAGAAAAATTTATAGTT----CGT---------------------------------------------------------------------AAATATTGTTA-CTTATAAGCA-T-CGTTGCCATTTTATCGCTC--------------------TT--------------------CCA----------------------------------ATGTTATAATGTTATATTGG-------AAT--TTAAATT----------------------------------------------------------TCAGGGAGCCGGC--------A-ATT----------------------------------------------------TAA-------------GCTTCA---------------------------------ACA-ACATAGATCAA--GATCATA----TG----C-CCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------ACA-ACATAGATCAA--GATC...................1911.0011000
...........................................................................TTCCTTCTGCCTGTTACATACTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000
dm3
GGCCAGATCGACTTGGCTATTAATCCTGATCAAAAATATA--TATTTATATATTTGATTATATGGTCGGAAACGCTTCCGTCTGCCTGTTGCATACTTTTCAA-------CGACTTCAGAATAAT------T--TA----GCAATGATTTATACTTTCACCTCTCTTTTT-------CCTATCAACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATGCGATCCTATTAGATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGTTAGTTAGC--------G-ATT----------------------------------------------------TTA-------------AG--------------------------------------------------------------------------TTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................TATTTGATTATATGGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261139.00139000000000000000000000000000000000000000010000000001010000000000000000000000000000020000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000010820000000020100160000000003701601011610000000000000000000000000000000000000000000000000000000000070010013000000001430000000000000001000000000
....................................................TTTGATTATATGGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241101.00101000000000000000000000000000000000000000011000010001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000020000000040000000000000000000000000000000500000001130600004211000100040000010001003010700000000000000000000000000000000000000000000000000000000000020000014000000003100000000000000000001000000
...............................................................................................................................................................................................................................................................................................................................................................TTAGATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGT........................................................................................................................................................................24185.0085000000000000000000000000000000000000000020000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111001000000000000000000000000000000000000000010142010900001220103000004000203110100000000000000000000000000000000000000000000000000000000000040000013000000001720000000000000000011000000
.............................................................................................................................................................................................................................................................................................................................................................TATTAGATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGT........................................................................................................................................................................26150.00500000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205000000110000000000000000000000000000000000000140000040000002000400000000170300110000000000000000000000000000000000000000000000000000000000001000000100000000603000000000000000010000000
....................................................TTTGATTATATGGTCGGAAACGCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26146.004600000000000000000000000000000000000000001000001000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000002001000700001001002000000001302000100000000000000000000000000000000000000000000000000000000000010000011000000001600000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TAGATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGTTAGT....................................................................................................................................................................27126.00260000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000100000000000000000000000000000000000101000000000001030100000000000001000000000000000000000000000000000000000000000000000000000000003000000000000000900000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTAGATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGTTAGT....................................................................................................................................................................28125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000500000000000000100000000050001040000000000000000000000000000000000000000000000000000000000001000000000000000500000000000000000002000000
.......................TCCTGATCAAAAATATA--TATTTATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000030000000000000000000030811080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TTGATTATATGGTCGGAAACGCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25125.00250000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100100000000000000000000000000000000000000000000000000000301010000000300010000000000000000000000000000000000000000000000000000000000000000002000001200000000600000000000000000000000000
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...................................................................................................TCAA-------CGACTTCAGAATAAT------T--TA----GCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATGCGATCCTATTAGA..............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TTACCTT----------------------------------------------------------TCAGTTAGTTAGC--------G-ATT----------------------------------------------------T..............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTAGATTTT-------GGA--TTACCTT----------------------------------------------------------TC...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TATCAACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATGCGATCCTAA..................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................CGACTTCAGAATAAT------T--TA----GCAATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TATGGTCGGAAACGCTTCCGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TATCAACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATGC..........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGTT.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................TTTTCAA-------CGACTTCAGAATAAT------T--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TATCAACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATGCGATCCT....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CCTATTAGATTTT-------GGA--TTACCTT----------------------------------------------------------TCAG.........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TGATTATATGGTCGGAAACGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TAGATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGA........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TT--------------------GGT----------------------------------ATGCGATCCTATTAGA..............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TGATTATATGGTCGGAAACGCTTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................TTCAA-------CGACTTCAGAATAAT------T--TA----GCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AA-------CGACTTCAGAATAAT------T--TA----GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TTTGATTATATGGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................T------------------------------TT--------------------GGT----------------------------------ATGCGATCCTATTAGATTT...........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TTTGATTATATGGTCGGAAACGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................T--------------------GGT----------------------------------ATGCGATCCTATTAGAT.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.............................................TTATATATTTGATTATATGGTCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TGCGATCCTATTAGATTTT-------GGA--..............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................TATTAATCCTGATCAAAAATATA--TA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TGCATACTTTTCAA-------CGACTTCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TTTT-------GGA--TTACCTT----------------------------------------------------------TCAGTTA......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GATTTT-------GGA--TTACCTT----------------------------------------------------------TCAGTTAGTATC.................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATGCGATC......................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TATTTGATTATATGGTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TTTT-------GGA--TTACCTT----------------------------------------------------------TCAGT........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TATATTTGATTATATGGTCGGAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CTT----------------------------------------------------------TCAGTTAGTTAGC--------G-ATT----------------------------------------------------...............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................GAAACGCTTCCGTCTGCCTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CCTGATCAAAAATATA--TATTTATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CAACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATGCGATCCTATTAG...............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................TTGCATACTTTTCAA-------CGACTTCAGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TATTTGATTATATGGTCGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CGATCCTATTAGATTTT-------GGA--TT............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TACTTTTCAA-------CGACTTCAGAATAAT------T--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TCTTTTT-------CCTATCAACG---------------------------------------------------------------T------------------------------TT--------------------GGT----------------------------------ATG...........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTCACCTCTCTTTTT-------CCTATCAACG---------------------------------------------------------------T------------------------------T........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TTCAGAATAAT------T--TA----GCAATGATTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................T-------GGA--TTACCTT----------------------------------------------------------TCAGTTAGTTAGC--------G-AT....................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CTT----------------------------------------------------------TCAGTTAGTTAGC--------G-A.....................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ACCTCTCTTTTT-------CCTATCAACG---------------------------------------------------------------T------------------------------TT--------------------G..................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................T-------GGA--TTACCTT----------------------------------------------------------TCAGTTAGTTAGC--------G-A.....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TTACCTT----------------------------------------------------------TCAGTTAGTTAGC--------G-A.....................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TCACCTCTCTTTTT-------CCTATCAACG---------------------------------------------------------------T------------------------------T........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TT-------GGA--TTACCTT----------------------------------------------------------TCAGTTAGTTAGC--------........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TAATCCTGATCAAAAATATA--T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGCTAGTTCAACTCGGGTCTTGATCGTGATCAAGAATATA--AATA------CT---TTATATAGTCGGAAACGATTCCTTCTGACTGTTACATACTTTTCAA-------AGAATCTAGTATACC------C--T---T------------------------TTACTCT-------ATGAGTAACGGGTATTAT-TATGT-------------------------------------------------------CGC----------------------TT--------------------GTA----------------------------------ATGAAACAAC-------------------------------------------------------------------------------------------------------------------------TTTGGTGTGTT-------CAATTTAAT-------------------------------------------------------------------------------------------------------------TTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GGCCAGATCGACTCGGCTACTGATCCTGATCAAGAATATA--TATA------CT---TTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAA-------CGAATCTAGTATACC------C--T---T------------------------TTACTCT-------ACGAGTAACGGGTATAAT-TATTATGC-----------------ATTATTA-GGTACATAGA-T-TGT-GCT-----ATTATTA--------------------TT--------------------TCT-----------------ATGTTGAATTTAAA--TAA-TTGTAATGTTAA--GGCAATGCAAAAC--TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-ATT----------------------------------------------------TA-------------------------------------TAAAAA----------ATT-ATATAGATTTA--AAGTCT-----------A-AGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-ATT----------------------------------------------------TA-------------------------------------........................................................26201.2024020000040000
............................................................TATGGTCGGAAACGCTTCCTTCTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.40800800000000
....................................................................................................................................................................................................................................................................................................................................................................................TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-AT....................................................................................................................................................23200.30603300000000
....................................................................................................................................................................................................................................................T-GCT-----ATTATTA--------------------TT--------------------TCT-----------------ATGTTGAATT.....................................................................................................................................................................................................................................................................................26200.30606000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-ATT----------------------------------------------------T..............................................................................................25200.25505000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-ATT----------------------------------------------------...............................................................................................24200.20400400000000
.....................................................................................................................................................................................................................................................................................................................................................................................AGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-ATT----------------------------------------------------TA-------------------------------------........................................................25200.10202000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------........................................................................................................................................................20200.10200100010000
..................................................................................................................................................................................................................................................TGT-GCT-----ATTATTA--------------------TT--------------------TCT-----------------ATGTTGAATT.....................................................................................................................................................................................................................................................................................28200.10200000000002
.....................................................................................................................................................................................................................................................................................................................................................................................AGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-ATT----------------------------------------------------...............................................................................................23200.10202000000000
.......................................................................................................................................................................................................................................................CT-----ATTATTA--------------------TT--------------------TCT-----------------ATGTTGAATTTA...................................................................................................................................................................................................................................................................................26200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------A-ATT----------------------------------------------------TA-------------------------------------TA......................................................28200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................TGTTAA--GGCAATGCAAAAC--TAGAGTT----------------------------------------------------------.............................................................................................................................................................................26200.05101000000000
.........................CTGATCAAGAATATA--TATA------CT---T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
........................................................................................................................................................................................................................................................T-----ATTATTA--------------------TT--------------------TCT-----------------ATGTTGA........................................................................................................................................................................................................................................................................................20200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................TGTTAA--GGCAATGCAAAAC--TAGAGT........................................................................................................................................................................................................................................25200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................TTAA--GGCAATGCAAAAC--TAGAGTT----------------------------------------------------------.............................................................................................................................................................................24200.05101000000000
......................................................................................................................................................................................................TTATGC-----------------ATTATTA-GGTACATAGA-T-................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................A--GGCAATGCAAAAC--TAGAGTT----------------------------------------------------------TTTAAGT......................................................................................................................................................................28200.05100000010000
............................................................................................................................................................................................................................................................................................................................................................................CAAAAC--TAGAGTT----------------------------------------------------------TTTAAGTGGTGG.................................................................................................................................................................25200.05101000000000
..........................................................................................................................................................................................................GC-----------------ATTATTA-GGTACATAGA-T-TGT-GC..........................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................C--TAGAGTT----------------------------------------------------------TTTAAGTGGT...................................................................................................................................................................18200.05100010000000
........................................................................................................................................................................CT-------ACGAGTAACGGGTATAAT-..............................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
...............................................................................................................................................................................................................................................................................................................................................................................AAC--TAGAGTT----------------------------------------------------------TTTAAGTGGTGGC--------........................................................................................................................................................23200.05100010000000
droEug1
GGCTCAATCGACTTCGCTATTGATCTCGATCAAGAATATA--TATA------CT---TTATAGGGTCGGAAACGCTTCCTTCTTCCTGTTACATACTTTTCAA-------CGTATCTAATATACA------T--A---CT---------------TA------TTACT---------------ATCTTATATAAT-AAGATTT-------------------------G-TTATAGTCA-T-CATAGTTGTTGGGACGC----------------------AT--------------------TAA----------------------------------ATTAC----------------------------------------------------------------------------------------------AAACTTTTGTTATTACAGAA-TGT--TACAGAATT--------GATACAA------------------------------------------GTA------------------AACAAGAAATTCAATTCAAAA-A---------------------------------CASizeHit CountTotal NormTotal
No Reads
droBia1
GGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATATA--TATA------CT---TTATGGGGTTCGAAACGCTTCCTTCTGACTGTTACACACTTTCCGA-------CGAATCTAGTATACC------C--T---T------------------------TTACTCT-------ACGAGTAACGGGTATATT-TATTTCACTC-----------------TTT--------------------------------------------------------------------------TTT----------------------------------------TCAGACCATTTTTTTGA-------CAT--TTATATGTT--AGAGTAAT---------------------------------------------------------CC--------G-ATT----------------------------------------------------TGTATTAAATTGAATT------CGAAATTCTTAAAATTATAA--------------------------AA--AATTATA----TT----C-CCAASizeHit CountTotal NormTotal
No Reads
droTak1
GGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAATATA--TATA------CT---TTATGGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTTTTGCA-------CGAATCTAATATACC------C--T---T------------------------TTACTCT-------ACGAGTAACGGGTATAAA-AATAGTG--------------------------TTTAAAAACA-T-TCA----------------TGTATTTTCTTATGGTATTA--CT--CC-------------CTCG---------------ATTC-----------------ATTATTATGTTAT------------------------------------------------------------------------------------------------------------------------------T-------CAATTAAATTTAAAAACTAAACACATTAA-------------A-----------------AT-----------------------CTATTAATTA-AACATCAAG----AG----CTCCAASizeHit CountTotal NormTotal
No Reads
droEle1
GGCTAGATCGACTCTACTAGTGATGCTGATCAAGAATATA--TATA------CT---TTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTTCTGAC-------TGAAACTATAATACC------C--T---CTGCAA------------------------------------------GGGTATAAAAAATTATA-------------------------A-C-------T-T-TGCTGCTTTTTAATTTTTT--------------------GT--------------------TCA----------------------------------GTTCTTCGA---CATATAGC-------AATGGTTAAATATTTCAG--AGTT---------------------------------------------------------AT--------G-GTT----------------------------------------------------TAGATTTTATCAAAAT------C--------------------------------------GGACGTCTA--TATCAT---------------ATSizeHit CountTotal NormTotal
No Reads
droRho1
GGCTAGATCGACTCGGCTAGTGATCCTGAACAAGAATATA--TATA------CT---TTTTAGGGTCGGAAACGCTACCTTCTACCTGTTACATACTTTTGCA-------CGAATACAATATACC------C--T---T------------------------TTACTCT-------ACGAGTAACGGGTATAAA-AATAATA-------------------------A-C-------T-T-TGT----------------TGTTT-----------------------------------------------TTAATTTTTTTTGATTTGATTTTA--------------------------------T--TTAAATTTTATTG--AATT---------------------------------------------------------AC--------G-GTT----------------------------------------------------TAAATTAAATTAAAAT------C--------------------------------------GGACAACAA--TATCATA----TA----G-CTGCSizeHit CountTotal NormTotal
No Reads
droFic1
ACATATTTCGATTCAGATGGTGATGCTGATCAAGAATATA--TATA------CT---TTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGCAAACTTCTGAC-------TGAAATTATAATACC------CTTTGCTCTGCAA------------------------------------------GGGTATAAT-TATTT-------------------------------AGAAATC-T-ATAC---AT-------------------------------------------------------CGTGT----------------------------------------------------------------------------TAATCTTTGAATTTGCTCTTAAAATTATATATTAAATAACAACTCTTTTCCCAAAGTTTCAAC--------G-TTG----------------------------------------------------TAA-------------AATT-----------------------------------------------------------------------CCACSizeHit CountTotal NormTotal
No Reads
droKik1
GGCTATATCGACTCGGCTGTTGATGCTGATCAAGAATATA--TATA------CT---TTATAGGGT-----------CCTTCACTGCGTTGCGAACTTCTGAC-------TGAAATTATAATACC------C--T---G--CAA------------------------------------------GGGTATAAA-AATAT-AATCAGTCAGTCCGACGACAGGTTTG-TTTACAAGTCAT-AATTTATTT---TTCGC----------------------------------------------A----------------------------------A------GCTAATAAGTTTT-------AA---CTAAATTT---------------------------------------------------------TCAGGAA-AA-GT--------A-ACG----------------------------------------------------TAG-------------CGTT----------GCAAAAATAGGA--------------------------AA--AGTCATG----TT----CGCAAASizeHit CountTotal NormTotal
No Reads
droAna3
GCTCATATCGACTCAGGAGGTGATCTTGATCAAGAATATA--TATA------CT---TTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTTTTGAC-------CAAAATTATAATACC------T--T---ATGCAA------------------------------------------GGGTATAAC-AATCGCATGA-----------------TTA-------TAAATA-T-T-----------------------------------------------------------A----------------------------------------TCAAA-----------C-------AATCACTAAATAAT--TTA--------------------------------------------------------------C----------------------------------------CAATTTAACTTGGCAAACGGGAATA-TAA-------------TTTT----------TCAAAA-----------------------CTACAGAATA-AAAATCGTA----TA----T-CAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................TTCACTGCGTTGCACACTTTTGAC-------CAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.80161600000
......................................TA--TATA------CT---TTATAGGGTCGGAGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.50100010000
............................................................TAGGGTCGGAGATGTCTCCTTCACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
......................................TA--TATA------CT---TTATAGGGTCGGAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102002000
.....................................................................AGATGTCTCCTTCACTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000002
..TCATATCGACTCAGGAGGTGATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................TTGATCAAGAATATA--TATA------CT---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..TCATATCGACTCAGGAGGTGATCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000
....ATATCGACTCAGGAGGTGATCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
.....TATCGACTCAGGAGGTGATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
.............................................................................................CACTTTTGAC-------CAAAATTATAATACC------T--T---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..........................................................TATAGGGTCGGAGATGTCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
....ATATCGACTCAGGAGGTGATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
...............GGAGGTGATCTTGATCAAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.....................................................T---TTATAGGGTCGGAGATGTCTCCTTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000010
.............................................................................CCTTCACTGCGTTGCACACTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
............................................................................................ACACTTTTGAC-------CAAAATTATAATACC------T--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
droBip1
GCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATA--TATA------CT---TTATAGGGTCGGAGATGTCTCCTTCACAGCGTTGCACACTTTTGAC-------CAAAATTATAATACC------C--T---CTGCAA------------------------------------------GGGTATAAA-TATCTG-CTT-----------------TTATC-------AGTTGT-CTTCAACAT----------TG----------------------------------------------------------------------------------------------TAC----------------AAG----------------------------------------------------------TTAAAAT----TC--------AAATT--------------------------------------CAAATT--------TAA-------------ACA----------------------------------------AGA------------------------------AAGSizeHit CountTotal NormTotal
No Reads
dp5
GGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATTTA--TATA------CT---TTATGGGGTCGGAAACGACTCCTTCTGGACGATGCACACATCCACTTTTACC-ACAATCTAATATAAT------A--T----------------------------ATACTC-ATT----TTGAGTATCGGGTATTAA-AATAACT-------------------------C-CGA--AGTA-TAAGTTAGCATTTGGTAGT---------------------C--------------------------------CCAACTTGGCTTGATATTACTTTATATAT------------------------------TCGATCT----------------------------------------------------------TTTAGGGACTTGT--------A-A------------------------------------------------------TAA-------------TTTTCT---------------------------------AGA-ACATTGATCGA----------------------TATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................TGAGTATCGGGTATTAA-AATAACT-------------------------C-C...........................................................................................................................................................................................................................................................................................................................................................................................2631.6750200000300
.......................TGCTGATCAAGAATTTA--TATA------CT---T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.7530200000100
................CTATTGATGCTGATCAAGAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.5020100000010
.......................TGCTGATCAAGAATTTA--TATA------CT---TTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.5020000000200
.......................TGCTGATCAAGAATTTA--TATA------CT---TTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.5020200000000
.......................TGCTGATCAAGAATTTA--TATA------CT---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.4020000000200
.................................................................TCGGAAACGACTCCTTCTGGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.4020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT---------------------------------AGA-ACATTGATCGA----------------------TAT2060.3320000000020
.................................................................................................................................................................................TTGAGTATCGGGTATTAA-AATAACT-------------------------C-C...........................................................................................................................................................................................................................................................................................................................................................................................2730.3310000000100
.................................................................TCGGAAACGACTCCTTCTGGACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.3310100000000
..................................................................CGGAAACGACTCCTTCTGGACGATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.3310100000000
........................................................................................................TTACC-ACAATCTAATATAAT------A--T----------------------------AT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000010
.................................................................TCGGAAACGACTCCTTCTGGACGATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.3310100000000
..............................................................................................................................................................................................................................................A-TAAGTTAGCATTTGGTAGT---------------------C--------------------------------CCAACT...................................................................................................................................................................................................................................................................................................2730.3310100000000
..................................................................................................................................................................................TGAGTATCGGGTATTAA-AATAACT-------------------------C-............................................................................................................................................................................................................................................................................................................................................................................................2530.3310000000010
.......................................................................ACGACTCCTTCTGGACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
.....................GATGCTGATCAAGAATTTA--TATA------CT---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.2510010000000
.............................................................GGGGTCGGAAACGACTCCTTCTGGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.2510100000000
..........................................................................................GCACACATCCACTTTTACC-AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010100000000
.......................................................................................................................................................................TC-ATT----TTGAGTATCGGGTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000010000
.......TCGACTCGGCTATTGATGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040400000000
.................................................................TCGGAAACGACTCCTTCTGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010100000000
.................................................................TCGGAAACGACTCCTTCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710100000000
.......................TGCTGATCAAGAATTTA--TATA------CT---TG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.1710100000000
....................TGATGCTGATCAAGAATTTA--T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000001000
......................................TA--TATA------CT---TTATGGGGTCGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
....................................................................................................................................................................TACTC-ATT----TTGAGTATCGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000001000
droPer2
GGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATA--TATA------CT---TTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATACACTTTTACCACAAATCTAATATACC------C--C---A------------------------ATACTC-ATT----TTGAGTATCGGGTATAAA-AATTATACTC-----------------TTCCA-------AGTAAT-CTCTTCCAT----------TGTCTATACTTATTGTA-----------------------------------------TTCTTTGTTCTCGTACTA--TAA-TTATC----------------------------ATG----------------------------------------------------------TCAGAAC----AC--------G-ATC-------------------------------------GGCAACT--------AAA-------------ACCGAA---------------------------------AAG-AAATTGGTTG----ATTATTTACATA----G-AACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................TGGGGTCGGAAACGATTCCTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.255050000
....................................................CT---TTATGGGGTCGGAAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102020000
..CTCAATCGACTCGGCTATTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droWil2
GGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATA--TATA------CT---TTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTTGG-------CGACTTTAATATACC------A--T---T------------------------TCACCCT-------ATGGGTGTATGGTATAAA-AACTATT-------------------------G-CC-----------------AT-------------------------------------------------------GATGTTCACAATTTTAGTTGCTG-------------------------------------------------------------------------TTGTTGCAGTT-----------------------------------GC--------A-ATT----------------------------------------------------TAG-------------CCCCCA---------------------------------GCAAATGTGCAACAA--AATCATT----TTCATGC-TCACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................TGCTG-------------------------------------------------------------------------TTGTTGCAGTT-----------------------------------GC--------A-......................................................................................................................................................1940.25100010
.....................................ATA--TATA------CT---TTGTGGGGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202000
.........GACTCGGTTGTTGATCCTGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
............................................................TGGGGTCGGAGATGCTTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.....................................................T---TTGTGGGGTCGGAGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
...............................................................................................................GACTTTAATATACC------A--T---T------------------------TCACCCT-------AT...............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
.........................................................TTGTGGGGTCGGAGATGCTTCCTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
..................................................................CGGAGATGCTTCCTTCTGCCTGTTACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
...........................................ATA------CT---TTGTGGGGTCGGAGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
droVir3
GGCTAGATCGACTCGGCTATTGATGCTGATCATGAATATA--TAAA------CT---TTATGGGGTCTGAGATGCTTTATTCTGCCTGTTACATGCATTTGGATTTCGCACAAATACAATATACC------C--T---T------------------------ATACCC-ATTTTTAATGGGTTCAGGGTATAAA-AATTCTC-T-------------------------TT-----------------AATTTATAGCTT--------------------TACATTTATTTGATTATATATT----------------------------------------TAAAAATTATTAATTGA-------CAT--TTAAATT----------------------------------------------------------TTTTTGTGCAGGT--------A-TATTTCAATGATTT--------AATACAA------------------------------------------GCT-----------------------------------------------------------------G----A-CAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................TGCATTTGGATTTCGCACAAATACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2632.006003000000000000000000000000001010001000000000000000000000000000
.............................................................................................TGCATTTGGATTTCGCACAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.672000010000000000000000000000000000000000100000000000000000000000
.............................................................................................TGCATTTGGATTTCGCACAAATACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.672001000000000000000000000000001000000000000000000000000000000000
.............................................................................................TGCATTTGGATTTCGCACAAATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.331000010000000000000000000000000000000000000000000000000000000000
.............................................................................................TGCATTTGGATTTCGCACAAATACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331001000000000000000000000000000000000000000000000000000000000000
............................................................................................ATGCATTTGGATTTCGCACAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.331001000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGCATTTGGATTTCGCACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331001000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGCATTTGGATTTCGCACAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331000000000000000000000000000000000000000100000000000000000000000
.................................................................................................TTTGGATTTCGCACAAATACAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153000000000000000000000000300000000000000000000000000000000000000
...............................................................................TTCTGCCTGTTACATGCATTTGGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.112000000000000000000000000000000020000000000000000000000000000000
..............GGCTATTGATGCTGATCATGAATATA--T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27140.071000000000000000000000000001000000000000000000000000000000000000
.................TATTGATGCTGATCATGAATATA--T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.071000000000000000000000000010000000000000000000000000000000000000
..................ATTGATGCTGATCATGAATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051000000000000000000000000000100000000000000000000000000000000000
..................................................................................TGCCTGTTACATGCATTTGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051000000000000000000000000000100000000000000000000000000000000000
..CTAGATCGACTCGGCTATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000100000000000000000000000000000000000000000000000000000
..........................................................TATGGGGTCTGAGATGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000010000000000000000000000000000000
................................................................................TCTGCCTGTTACATGCATTTGGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................AAATACAATATACC------C--T---T------------------------ATACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
...................................ATATA--TAAA------CT---TTATGGGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................TTTAATGGGTTCAGGGTATAAA-AATT..........................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................ATTTTTAATGGGTTCAGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000100000000000000000000000000000000000000000000000000
droMoj3
GGATAAATCGTCTCAGCTCGTCGCCCTGATCAAGAATATATATATA------CT---TTGTGGGGTCTGCCACGCCTCCTTCTGCCTGTCACATACTTTTAAC--------AATACAAACAAACC------C-----------AGGG--TATAATT-------TT-CCC-ATTTTT-ATGGGTTTTGGGTATAAA-AATGATC-------------------------G-TGG--AACA-C-TAA----------------TATGTTT-----------------------------------------------------AT-------------------------------------------------TTAATGT------------------------T-------TT-----------------------------------GC--------------------------------------------------------------------AATATATCGGG------TAGCAGACTATAAAAA---CTT------AA-----A-----G------TG--GGACATA----CA----C-ATGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------GC--------------------------------------------------------------------AATATATCGGG------TAGCAGACTAT................................................................25110.0010900010
......................................................................................TGTCACATACTTTTAAC--------AATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------AATATATCGGG------TAGCAGACT..................................................................2111.001100000
....AAATCGTCTCAGCTCGTCGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000010
.....AATCGTCTCAGCTCGTCGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000010
.....................................................T---TTGTGGGGTCTGCCACGCCTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
..........................................................TGTGGGGTCTGCCACGCCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
GGTTACATCGACTCGTCTGCTGATCCTGATCAAGAATATA--TACA------CC---TTATGGGGTCGGATATGCTTCCTTCTGCCTGTTTCACACTATTGCA-------CAAAACAATTATACG------C--T---T------------------------TTTAACC-------ATTTTTAATGGGTTCAAC-AATTACC----------------------------------------------ATTTTACT-----------------------------------------------------------------------A-------------------------------------------------------------------------TCGTCGAAGTT-----------------------------------GC---------------TACAAAGTT---------------------------------------------------------------------------------------------------------GATGGA----TAACAATTAAA----A-TTTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:18 AM