ID:

dsi_8921

 Coordinate:

3l:7627352-7627501 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.2 -23.1 -23.1

Flybase annnotation

CDS [3l_7627502_7628675_-]; exon [3l_7627502_7628985_-]; intron [3l_7612397_7627501_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAATCTGCTCGACGATGCCCTCAAGTTTTGCAATGCCAGCTTGGAAAAAGGTGAGTTACGTTATAAAACATATATTGGGGAATCAAAAAACATATTATGGCTATTATTTTTTTACTCGAATTCACCTTATTACCTTCAAATTTCTCTCTGTGGAGCAGCAATCCTTTTCGTTTCGACTGCATTGAGGGGGAATTGAAAAATCAATAAGGGGCAGGGCCGAAAATGGCAAGGCTCAATAGACTTCATGTGC
**************************************************(((((((.((...(((((...(((.(((......................))).)))..)))))..))))))))).........(((((.((((((((.(((.((.....................)).))).)))))))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
.................................TGCCAGCTTGGAAAAAGGTGAG................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................CAGCAATCCTTTTCGTTTCGACT........................................................................ 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................ATCGGCTGCAATGAGGGGGAA.......................................................... 21 3 4 0.25 1 0 0 1 0 0
................................................................GAAACATATACTGGGGA......................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 1 0
.........................................AGGAAAAAGGTGGGTTATGT............................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1
.......................................................................................................................................................................................GCGGGCGAATTGAAACATC................................................ 19 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GTTAGACGAGCTGCTACGGGAGTTCAAAACGTTACGGTCGAACCTTTTTCCACTCAATGCAATATTTTGTATATAACCCCTTAGTTTTTTGTATAATACCGATAATAAAAAAATGAGCTTAAGTGGAATAATGGAAGTTTAAAGAGAGACACCTCGTCGTTAGGAAAAGCAAAGCTGACGTAACTCCCCCTTAACTTTTTAGTTATTCCCCGTCCCGGCTTTTACCGTTCCGAGTTATCTGAAGTACACG
**************************************************(((((((.((...(((((...(((.(((......................))).)))..)))))..))))))))).........(((((.((((((((.(((.((.....................)).))).)))))))).)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..........................................................................................................AAAAAAATGTGCTTGAGTG............................................................................................................................. 19 2 5 0.20 1 1 0 0
...AGGCGAGCTGCTACG........................................................................................................................................................................................................................................ 15 1 12 0.08 1 1 0 0
.....................................................................................................................................................CCACTCGTCGTTAGGAA.................................................................................... 17 2 14 0.07 1 0 1 0
...........................................................................................................................................................................AAGCTGAAGTAACTC................................................................ 15 1 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:26 AM