ID:

dsi_8876

Coordinate:

3r:10761417-10761566 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10761240_10761416_+]; CDS [3r_10761240_10761416_+]; intron [3r_10761417_10762321_+]

Repeatable elements

Name	Class	Family	Strand
(T)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAATTCCAACCAGAAATATATTAAAAGCACCACGGAGGCAACCACACAAGGTGGGTTCGGATCCGGATTCGGATTCAGATTCGGTTTAACGTTTGCTGCTGCTGGGGATTTGTCTTTGGAGTGTTTACCCCAATTTTGTTATTTTTCCGTTTGCATATATTTTTTGTTTTTGTTATTTCGTTTTTTTTTTTTTTTTCGCGCGATCGCCTACAAAATACCACTCCTCGCATCCGAGGCAGCGTTTTTCGTG ************************************************.(((((((((((....)))))))))))((..(((..(((((...(((((...((((((..((...((((.((....)).))))......))..))))))...)))..........))...)))))..)))..))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	SRR553488 RT_0-2 hours eggs
................................................CCGTGGGTTCGGATCCGG........................................................................................................................................................................................	18	2	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................AATACCACTACTCGCA.....................	16	1	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................................................TTTTTTTTTTTCGCGCGC...............................................	18	1	8	0.13	1	0	0	0	0	1	0
.................................................CGTGGGTTCGGATCC..........................................................................................................................................................................................	15	1	20	0.10	2	0	0	0	1	0	1
.................................................................................................................................................................................................................................CGAATCCGACGCGGCGTTT......	19	3	10	0.10	1	0	0	0	1	0	0
...............................................................................................................................................................................................................................CTCGCTTCCGAGGGAGCCT........	19	3	14	0.07	1	0	0	1	0	0	0
...................................................................................................................TTGGATTGTTTACCC........................................................................................................................	15	1	18	0.06	1	0	0	1	0	0	0
.....................................................GGTTCGGATCCGGGT......................................................................................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................CGCATATATTTTGTGTTTTG...............................................................................	20	3	20	0.05	1	0	0	1	0	0	0
.................................................................................................................CTTTGGAGTTTTTAC..........................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

GTTAAGGTTGGTCTTTATATAATTTTCGTGGTGCCTCCGTTGGTGTGTTCCACCCAAGCCTAGGCCTAAGCCTAAGTCTAAGCCAAATTGCAAACGACGACGACCCCTAAACAGAAACCTCACAAATGGGGTTAAAACAATAAAAAGGCAAACGTATATAAAAAACAAAAACAATAAAGCAAAAAAAAAAAAAAAAGCGCGCTAGCGGATGTTTTATGGTGAGGAGCGTAGGCTCCGTCGCAAAAAGCAC ************************************************.(((((((((((....)))))))))))((..(((..(((((...(((((...((((((..((...((((.((....)).))))......))..))))))...)))..........))...)))))..)))..))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
.......................................................................................................................................................................................AAAAAAAAAAAAAGCGCTCTACCTG..........................................	25	3	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................AAAAACAAAAACAACAAAACAAAAACAAAAAAAAAA......................................................	36	3	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................AAAAACAGAAACAAAAAAACAAAAAAAAAAAAAAAA......................................................	36	3	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................GCGTAGGTTCGATCGCAAAA.....	20	3	2	0.50	1	1	0	0	0	0	0
..TAAGGTTGGTCTTTA.........................................................................................................................................................................................................................................	15	0	2	0.50	1	0	0	0	1	0	0
......................................................................................................................................................................................AAAAAAAAAAAAAAGCGC..................................................	18	0	2	0.50	1	0	0	1	0	0	0
........................................................................................................................................ACAACAAAAAGACAAACGTATAAAAA........................................................................................	26	3	4	0.25	1	0	0	1	0	0	0
...............................................................................................................................................................AACAAACAAAAACAAAAAAACAAAAAAAAAAAAAAA.......................................................	36	3	4	0.25	1	1	0	0	0	0	0
........................................................................................................................................................................................AAAAAAAAAACAGCGCGCT...............................................	19	1	5	0.20	1	0	0	0	0	0	1
...............................................................................................................................................................AAAAAACAAAACCAAAAAAACAAAAAAAAAAAAAA........................................................	35	3	5	0.20	1	1	0	0	0	0	0
................................................................................................................................................................AACAACAAAAACAAAAAAACAAAAAAAAAAAAAAAA......................................................	36	3	6	0.17	1	1	0	0	0	0	0
........................TTCGTGGAGCCTTCCTTGGT..............................................................................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	1	0
................................................................................................................................................................AAAAACACAAACAAAAAAACAAAAAAAAAAAAAAAA......................................................	36	3	8	0.13	1	1	0	0	0	0	0
........................TTGGTGGTGCCTCCG...................................................................................................................................................................................................................	15	1	16	0.13	2	0	0	0	0	2	0
GGTAAGGTTGGTCTTTAA........................................................................................................................................................................................................................................	18	2	12	0.08	1	0	1	0	0	0	0
..TAAGGTTGGTCTTTAA........................................................................................................................................................................................................................................	16	1	13	0.08	1	0	1	0	0	0	0
.............................................................................................................................................................................................AAAAAAAGCGCCCTAGCT...........................................	18	2	15	0.07	1	0	0	0	0	1	0
.....................................................................................................................................................................................................CGCGCTAGCGGAAGCTT....................................	17	2	17	0.06	1	0	0	0	0	1	0
.................................................................................................................................................AGGCAAACGTACATAAT........................................................................................	17	2	19	0.05	1	0	0	0	1	0	0
.....................TTTTTCGTGCTGCCTCTGT..................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0

Generated: 04/24/2015 at 10:49 AM