ID:

dsi_8874

 Coordinate:

3l:16267307-16267456 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGGCCGGTCCAGCACCACTTTGGTCTACAGCTCCGAGCCACGAGGCAACCAAGGTGGTAAGTTGCGGAGCAGGCTAGCTGGTAGTTCGAGGTAGTGATAGTGCGCGCTCAGCTCGATGTTACACACTCATCTTGTCCTTGTCCTCGGCTAGTAGATATGTAGCCTTAACAGAACTAATCCAGACTTTTATGTCCTCACAGGCAACAGCGTGTATCCCAAGCGTATTGGATCCGTTTCCGATATTGATCCG
**************************************************...((((...((((((......((((((((..((..(((((....(((((((((.((...)).))........)))).)))....)))))..)))))))))).....))))))..................(((......))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
............................................................................GCTGGTAGGTCGAGGTAGTAATAGTGCG.................................................................................................................................................. 28 2 1 1.00 1 0 1 0 0 0 0 0
.........................TACAGCTCCGAGCCACGAG.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TGTATCCCAAGCGTAT......................... 16 0 1 1.00 1 0 0 0 1 0 0 0
.................CTTTGGTCTACAGCTCCGAGC.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................CTCTGGTCTACAGCTCCGAGC.................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................CCCAAGCGTATTGGATCCGTTT.............. 22 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................GCGGAGTAGCTTAGCTGGTA....................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0
.GGACGGGCCAGCATCACTTT..................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0
...............................................................................................................................................CCGGATAGTAGTTATGTAGC....................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 1
..........................................................................................................................................................................GAACTAATTCAGACT................................................................. 15 1 8 0.13 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................TCACAGACAACAGCGT........................................ 16 1 9 0.11 1 0 0 0 0 0 1 0
..........................................................................................................................................................................GAACTAATTCAGACTGTTAA............................................................ 20 3 11 0.09 1 0 0 0 0 1 0 0
.......................................................................................................................TACACAGTCATCGTGT................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................AAGCATTGTGGATCCGTTT.............. 19 3 20 0.05 1 0 1 0 0 0 0 0
.....................................................................................................................GGTACCCACTCATCTTGA................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

GCCGGCCAGGTCGTGGTGAAACCAGATGTCGAGGCTCGGTGCTCCGTTGGTTCCACCATTCAACGCCTCGTCCGATCGACCATCAAGCTCCATCACTATCACGCGCGAGTCGAGCTACAATGTGTGAGTAGAACAGGAACAGGAGCCGATCATCTATACATCGGAATTGTCTTGATTAGGTCTGAAAATACAGGAGTGTCCGTTGTCGCACATAGGGTTCGCATAACCTAGGCAAAGGCTATAACTAGGC
**************************************************...((((...((((((......((((((((..((..(((((....(((((((((.((...)).))........)))).)))....)))))..)))))))))).....))))))..................(((......))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
..................................................................................................................CAACAATGTGTGAGGA........................................................................................................................ 16 2 20 1.00 20 0 0 13 0 7 0 0 0
..................................................................................................TCACGCGCGAGTCGAGCTACA................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTCGGACATAGGGATCTCAT.......................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACCGAGGCCAAGGCTATA....... 18 2 6 0.33 2 0 0 0 2 0 0 0 0
............................................................................................................................................................................................................GTCGCAAATAGGGGCCGCAT.......................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................AGTGTCTGTTGTCGCA........................................ 16 1 9 0.22 2 0 0 0 2 0 0 0 0
.........................................................ATGCAAGGCCTGGTCCGAT.............................................................................................................................................................................. 19 3 5 0.20 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTAGGAAAAGGCTAT........ 15 1 7 0.14 1 0 0 0 0 1 0 0 0
..........................................................................................................................TGTCAGTCTAACAGGAACAG............................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 1 0 0
...................................................................................................................................AACAGGAACAGGAGC........................................................................................................ 15 0 8 0.13 1 0 0 0 1 0 0 0 0
..........TCGTGGCGAAACAAGATG.............................................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 1 0 0
...................................TCGCTGCTCCGTTGGGT...................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 1 0 0 0 0 0
....................................................................................................................ACAATGTGTGAGGAG....................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 1 0
.......................AGATGCCGAGGCTGGATG................................................................................................................................................................................................................. 18 3 17 0.06 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................AGTGTCTGTTGTCGC......................................... 15 1 18 0.06 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................CTCGATTAGGTAGGAAAAT............................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................AGTGTCTGTTGTCGCAT....................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 03:48 AM