ID:

dsi_8858

 Coordinate:

4:474050-474199 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.9 -22.2 -22.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron-

Sense Strand Reads

ATATTATTATTGATACAAACTCGAACGGTATTTCCATTTTGTTAAAAACTGTAAGTAACATTTTAATATTGAGGGTATTCAAAATGACTTAAGGGCAACATTTGTAACAATATTTATATAACATTTCTTTTTTCTGATGGTAATGAGCCATTTTTAAGTATTGCTTATCGTTGGTTTCACTTTAACGCCACAAGCCGCACAAAACTTCACGGCCACACTTATTAAGACTTGTTTGATTAGAGTAGAGTAA
**************************************************.(((((..((((((((((((...)))))).)))))))))))..(((.......(((((((((((((...................((((((.....))))))..))))))))).))))((((((.......))))))......)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
...TTATTATTGATACAAACTCGAACGG.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0
...TTATTATTGATACAAACTCGAACGGTAT........................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0
......................................................................................................................................................................ATCGTTGGTTTCACTTTAACGCCACA.......................................................... 26 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................TAATTATTGCCTATCGTTG............................................................................. 19 2 4 0.25 1 1 0 0 0
................................................................................AAAATGTCTTAAGGG........................................................................................................................................................... 15 1 18 0.11 2 0 2 0 0
.............................................................TTTAAGATTGAGGGT.............................................................................................................................................................................. 15 1 10 0.10 1 1 0 0 0
.........................................................................................................................................TTGTAATCGGCCATTTTTAA............................................................................................. 20 3 20 0.10 2 0 0 0 2

Anti-sense strand reads

TATAATAATAACTATGTTTGAGCTTGCCATAAAGGTAAAACAATTTTTGACATTCATTGTAAAATTATAACTCCCATAAGTTTTACTGAATTCCCGTTGTAAACATTGTTATAAATATATTGTAAAGAAAAAAGACTACCATTACTCGGTAAAAATTCATAACGAATAGCAACCAAAGTGAAATTGCGGTGTTCGGCGTGTTTTGAAGTGCCGGTGTGAATAATTCTGAACAAACTAATCTCATCTCATT
**************************************************.(((((..((((((((((((...)))))).)))))))))))..(((.......(((((((((((((...................((((((.....))))))..))))))))).))))((((((.......))))))......)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 SRR902008
ovaries
...........................................................................................................................................................................................................................ATAATTCTGAACAAGC............... 16 1 3 9.67 29 29 0 0 0 0 0 0 0
....................................................................................................................................................................................................CGTGTTTTGAAGTGCCGGTGTGAAT............................. 25 0 1 3.00 3 0 1 1 0 1 0 0 0
.......................................................................................................................................................................................TTGCGGTGTTCGGCGTGTTTTGTAGT......................................... 26 1 1 3.00 3 3 0 0 0 0 0 0 0
...........CTATGTTTGAGCTTGCCATAAAGGT...................................................................................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0
...................................................................................................................................................................................................................CGGTGTGAATAATTCTGAACAAACTAA............ 27 0 1 2.00 2 0 0 2 0 0 0 0 0
....ATAATAACTATGTTTGAGCTTGCCAT............................................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................AACCAAAGTGAAATTGCGGTGTTCGGCGT................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................TGAAATTGCGGTGTTCGGCGTGTTT............................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................ATAGCAACCAAAGTGAAATTGCGGTG........................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................TTACTGAATTCCCGTTGTAAACATTGT............................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGGCGTGTTTTGAGGTGCCGGTGT................................. 24 1 1 1.00 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................AGCAACCAAAGTGAAATTGCGGTGT.......................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TCGGCGTGTTTTGAAGTGCCGGTGT................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTGAATAATTCTGAACAAACTAATCT......... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................TTATAACTCCCATAAGTTTTACTGAAT............................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0
..................TGAGCTTGCCATAAAGGTAAAACAATTTT........................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................TTGTAAAGAAAAAAGACTACCAT............................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TTGCGGTGTTCGGCGTGTTTTGTAG.......................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................GAAATTGCGGTGTTCGGCGTGTTTT.............................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0
................................................................................................................................................................................AGTGAAATTGCGGTGTTCGGCGTGTT................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................AGCAACCAAAGTGAAATTGCGGTGTT......................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................GTGTTTTGAAGTGCCGGTGTGAAT............................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................CCAAAGTGAAATTGCGGTGTTCGGCGT................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................TGTAAAATTATAACTCCCATAAGTT........................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................AGTGCCGGTGTGAATAATTCTGAACAA................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................GGCGTGTTTTGAAGTGCCGGTGT................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................TTGCGGTGTTCGGCGTGTTTTGAAGTGC....................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................TTATAACTCCCATAAGTTTTACTGAATT.............................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TTGCGGTGTTCGGCGTGTTTTGT............................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATAATTCTGAACAATC............... 16 1 3 0.33 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATAATTCTGAACAAG................ 15 1 9 0.22 2 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAATTCTGAACAAGC............... 15 1 12 0.17 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATAATTCTGAACAAGCG.............. 17 2 16 0.13 2 2 0 0 0 0 0 0 0
............................................................................................ACCGTTGTAAACATT............................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:474000-474249 - dsi_8858 ATATTATTATTGATACAAA-----------------------------------------------CTCG-AACGGTATTTCCAT---------------------------TTTGTTAAAAACTGTAAGTAACA-----------------------------------------------------------------TTTTAATAT----TGAGGGTATTCAAAATGACT-TAAGGGCAA--------CAT-TTGTAACAATATTT--------------ATATAA---------------CATTTCTTTTTTCTGA--------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATGAGCCATTTT-------------------------------TAAGTATTGCTTATCGTT---------GGTTTC---------------ACTTT-AACGCCACAAGCCGCA------------------------------CAAAACT-T--------CACGGCCA---------CACTTATTAA----------GACTT------------------------------GTTTGATTAGAGTAGAGTAA-------
droSec2 scaffold_30:386942-387191 - ATATTATTATTGATACAAA-----------------------------------------------CTCG-AACGGTATTTCCAT---------------------------TTTGTTAAAAACTGTAAGTAACA-----------------------------------------------------------------TTTTAATAT----TGAGGGTATTCAAAATGACT-TAAGGGCAA--------CAT-TTGTAACAATATTT--------------ATTTAA---------------CATTTCTTTTTTCTGA--------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATGAGCCATTTT-------------------------------TAAGTATTGCTTATCGTT---------GGTTTC---------------ACTTT-AACGCCACAAGCCGCA------------------------------CAGAACT-T--------CACGGCCA---------CACTTATTAA----------GACTT------------------------------GTTTGATTAGAGTAGAGTAA-------
dm3 chr4:867996-868222 + AAATTTTTGTTGATATAAA-----------------------------------------------ATTGTAATTTTAATTTTAT---------------------------TTTATTAAAAAATGTACATAAT--------------------------------------------------------------------TGAACAA----TTAAGATTTCCATAGT---------------------------------TTCCAAAATTTGTAATCAATCATTATA---------------AATCTTCATTTTGTAA--------------TGTCGATGGAAATATTGGTTGTATGAAAAAAAAATATAAGAGACAATGAAAACATTGCAAAAT------------------------------------TTAATTTTGTTCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA-----TTGA----------------------------AAGATTT----------------------------------TTAAAAAAA-------
droEre2 scaffold_4929:26290480-26290735 + GGGTTATTTTTAAAGAA--------------------------------------------------TTCTTATTTTAATAA-----------------------------------TTATAATTATAATAATTA-----------------------------------------------------------------TATTATTAT----TTATATTATTATTAATTATTATAATAATAA--------TAA-TTATAATAATAATA--------------AT-----------------------TATAATAATTA------------------------------------------------------------------------------TAATATATAATAATAATTAAATATATGTAACTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTACAGA------TA---------GAACTCCCACCAACTTTACC--------------CAAATCATA------------------------------GGGAAAT-T--------TAGAACAAAATTGGCAACAG-------------TTTATACCCGTTATTC----------------------------------ATAGAGTAAAGGAGTA
droYak3 v2_chrUn_866:17104-17343 + CAGTTTTGAA-------AA-----------------------------------------------CTGT-ATTGATATTTACATTTTTTTTATGAGTTTTTTAAATTTTCTATC-----------------------------------TATT-TACAAAACGCTTTCTTGCCATTCTTC-------------------------------------------------------------A--------CTT-TTGTAA-AATGTTT--------------TGATAT---------------TTTTTCATTATTTTAT--------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTGTAAATTT-C-------------------------------TATCGATCTG---C--GG---------AAAATCTTAATTGCCACGCCCACTATAAACCCCAAAAACCGCC------------------------------AAAAACTGC--------CACGCCCA---------CACTTTTGAA----------AAATA------------------------------ATTTA-------------AT-------
droEug1 scf7180000409632:17029-17265 + ATATATTCAAATAGTTTTT---------TTCACTTTAAAAAATTTTACTTTTTGAATTGAAATATTTA-------------------------------------------------------------------------------------------------------------------------------------------------CGAGTATATTTAAAACCATA-TATTTGTAA--------CAT-ATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACTGTGCATTACATTTAAAATTAGTGGCAAAGAAA----------------------------------------------------------------------------TTAT-------------------------------TAGCCAATACTT--TATT---------CATTTT---------------AATTT-CCCGCCAAAAATTTTA------------------------------ACAAAAC-ACTCGCATCGATGGTCC-----ACTGC------------TTTATTATACCCGTTACTC----------------------------------GTAGAGTAA-------
droBia1 scf7180000302519:231370-231646 + ATTGATTTATATATTAA------------------------------------------------------AGCAAAATTTTTAT------------------------------------AT----------------------------ATTTGGTAAAATATTAATTAA----------------------------TTTAATTAA-TATTAATATTAATTAATTTAATT-TGCAGAAAAGTCAGGGTTATTTAATAATAATTAAT--------------ATTTAA---------------TATTACTCTTTTCAGAAAATACATTTGTAGTTTTGAAGAATTAGGTGTTAG---------------------------------------------------------------------------------------------------------------------------------TAAA----------------------------------------------------------------------------TAC-----------------------------------------------------------------------------------------------------CTAACCTTTAATTTATTTAATTTAATGCACACAAGAAT-G-CAGTTTTTGGGG-----TCGGAAACGCT-----------TTTTTTACCTT------------------------------TTTAAGTAAAGTAAAGTAA-------
droTak1 scf7180000415672:165824-166099 - ATAATATTTTACAAACGAA-----------------------------------------------ATCT-AACCAAGAG-----------------------------------------------------------------------------------------------------------------------------------------TACCATCACCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTCTAAACAATACATTTTATTATAACGACAAAAAAAGGACGTTCATAAAAAATTTCAACCTTTGTGTAAATAGTTTTATAATTTTAAAACCTTACTTAATTTCAAAAATCCACTTTTAAGTAGTTATAAATTTTGTGAAATTAACATTAATGAGGTG---CTTGTG-----------------------------------ATAATCACAATAAAAATAAAATTTAATTCAGTTA------------------------------------A---------CT----------TATTTTTATACCCGTTACTC----------------------------------GTAGAGTAA-------
droEle1 scf7180000491024:211600-211750 + ACTTCTGACT----------------------------------------------------------GA-AATTA-AAAAACATTTTTCTTATGAACTC-----------------------AACCAAACTG------------------------------------------------------------------------------------TAA------------------------------------------------------------------------------------CTTTT----------------------------------------------------------------------------------------------------------------------------TTCAATTTGTTTTTTCGCTTTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCCATAACTTTTA------------------------------CAA-----C--------CACGGACG---------GATTTCTTAAATGTTCTTTATACCCGTTACTC----------------------------------GAAGAGCAA-------
droRho1 scf7180000777894:12587-12806 - ATGTTGTTATTGATATAAC-----------------------------------------------AACA-AGCAAAACTGAAAT--TTCT---------------------GATGTAGAGAG----------------------------ATTTCATAAAACAGTAAATGA-AA------------------------AATTAAGAAT----TATAAATATTGAAACAGACA-TAGAAAA----------------------------------------------------------------------------------------------------------------------------------------------TAACCTAACAAAAT------------------------------------TTGAAACTATTCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTATAATCATA---------AATCAA---------------AACTT-AATACCACAGGCAAAA-------------------------------------------------CTGCTG---------CAG----------ATATTTATACCCGTTACTC----------------------------------GTAGAGTAA-------
droFic1 scf7180000454040:250936-250993 - ATATTATTATTGATACTAA-----------------------------------------------CTCG-GACGATATAACAGT---------------------------TATGTTAAAAAATGTAAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302543:12646-12700 + ATGTTATAATTGATACAAG-----------------------------------------------CTCT-GATGGCATATCAAT---------------------------TTTATTAAAAAACGTGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13499:770382-770452 + ATATTATCATCGATACAAA-----------------------------------------------CTCA-GAAAAAATAACTAT---------------------------TTTGTTAAAAAAAGTATGTACAT---------------CG------------------------------------------------TTTTAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396701:4133-4202 + ATATTGTCGTCGATACAAA-----------------------------------------------CTCA-GAGAAAATTGGTGT---------------------------ATTGTTAAAAAATGTATGTAAA--------------------T--------------------------------------------ATTTTAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_233:8769-8847 - ACATAATAATTGATATAAG-----------------------------------------------CTCA-GACGGCATTACAGC---------------------------GTTGCTGAAAAATGTGAGTTAGG---------------TGCTT--------------------------------------------CCTCTAACAT----TGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_42:463205-463283 + ACATAATAATTGATATAAG-----------------------------------------------CTCA-GACGGCATTACAGC---------------------------GTTGCTGAAAAATGTGAGTTAGG---------------TGCTT--------------------------------------------CCTCTAACAT----TGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004762:4848358-4848584 + TTATTG------ATTCAACATTGAGTTATTAACTTTTG----------------------------GTTA-AATTTTACAAGCGT------------------------TTCGTTGTAAACATAAAATAGAATTAACTAAGGGCACTTAATATA-TACTAAATATATATTGGTTTTATTCCTTTTTTGTGTATGTATGTATGTTTG-----------------------------------------------------------------------------------------------------GTTACCGTTTATA--------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------------------------------------------CTGTTGGGTTCATTCA-----------------------------------------------------------------------------T-T--------TACATCTA---------CCCTAAAT----AATATTTATACCATACACCC----------------------------------ATAGGATGA-------
droVir3 scaffold_12942:48031-48208 - GGGCAGCAGTTTTAATAAT-----------------------------------------------TTTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAGACACACACACACATTCATGGCGTCTG------------------------------------------------------------------------------CTTCGCATTGTAACAGCATGGTAACTGCGACATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTAATGCTA--TTTT---------AGTT-------------------------------------------------------------------------------------------------------------------TTTTTTTATACCCTGAACCAATTAAAAATGGGTATAAGGGTATATTGTATTTGTGCAAAATCA-------
droMoj3 scaffold_6496:20969344-20969551 - ATAATTTATTTTTAATTTT-----------------------------------------------TTCT-CACGAAATTTG--T---------------------------GTTGTGGAAATATATATTTTTTA-----------------------------------------------------------------TTTTAAAAAA---CTTGTATATTCAGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTATGAACACTATATTTTAATATAACATTTATT--------------------------------------AATTTTA-----------------------ATATTAAAACATG-T-------------------------------TATATATTTC---CGATT---------AGTTTC---------------CCT------------------------------------------------------------------------------------------------TTTATTATACCCTGAACCCATTGAAAATGGG-------------------AAATCAGGGTAT-------
droGri2 scaffold_15126:1579038-1579104 + ATATCTTAATTGACACGAA-----------------------------------------------CTCG-GCTGGAATTTCAGT---------------------------TCTACTAAAAAATGTGAGCTCGA-----------------------------------------------------------------TTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATATTATTATTGATACAAA-----------------------------------------------CTCG-AACGGTATTTCCAT---------------------------TTTGTTAAAAACTGTAAGTAACA-----------------------------------------------------------------TTTTAATAT----TGAGGGTATTCAAAATGACT-TAAGGGCAA--------CAT-TTGTAACAATATTT--------------ATATAA---------------CATTTCTTTTTTCTGA--------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATGAGCCATTTT-------------------------------TAAGTATTGCTTATCGTT---------GGTTTC---------------ACTTT-AACGCCACAAGCCGCA------------------------------CAAAACT-T--------CACGGCCA---------CACTTATTAA----------GACTT------------------------------GTTTGATTAGAGTAGAGTAA-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...TTATTATTGATACAAA-----------------------------------------------CTCG-AACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...TTATTATTGATACAAA-----------------------------------------------CTCG-AACGGTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTT---------GGTTTC---------------ACTTT-AACGCCACA.........................................................................................................................................................2611.00100000000001000000
droSec2
ATATTATTATTGATACAAA-----------------------------------------------CTCG-AACGGTATTTCCAT---------------------------TTTGTTAAAAACTGTAAGTAACA-----------------------------------------------------------------TTTTAATAT----TGAGGGTATTCAAAATGACT-TAAGGGCAA--------CAT-TTGTAACAATATTT--------------ATTTAA---------------CATTTCTTTTTTCTGA--------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATGAGCCATTTT-------------------------------TAAGTATTGCTTATCGTT---------GGTTTC---------------ACTTT-AACGCCACAAGCCGCA------------------------------CAGAACT-T--------CACGGCCA---------CACTTATTAA----------GACTT------------------------------GTTTGATTAGAGTAGAGTAA-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AAATTTTTGTTGATATAAA-----------------------------------------------ATTGTAATTTTAATTTTAT---------------------------TTTATTAAAAAATGTACATAAT--------------------------------------------------------------------TGAACAA----TTAAGATTTCCATAGT---------------------------------TTCCAAAATTTGTAATCAATCATTATA---------------AATCTTCATTTTGTAA--------------TGTCGATGGAAATATTGGTTGTATGAAAAAAAAATATAAGAGACAATGAAAACATTGCAAAAT------------------------------------TTAATTTTGTTCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA-----TTGA----------------------------AAGATTT----------------------------------TTAAAAAAA-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........GATATAAA-----------------------------------------------ATTGTAATTTTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTTTGTAA--------------TGTCGATGGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TGTAA--------------TGTCGATGGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTTTGTAA--------------TGTCGATGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................CGATGGAAATATTGGTTGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ATTTTGTAA--------------TGTCGATGGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TAAGATTTCCATAGT---------------------------------TTCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTGTAA--------------TGTCGATGGAAATATTGGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTTTGTAA--------------TGTCGATGGAAATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TCAATCATTATA---------------AATCTTCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TCGATGGAAATATTGGTTGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTCATTTTGTAA--------------TGTCGATGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----------------------------AAGATTT----------------------------------TTAAAAAAA-------1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTTTGTAA--------------TGTCGATGGAAATATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TAA--------------TGTCGATGGAAATATTGGTTGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TAA--------------TGTCGATGGAAATATTGGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................A---------------AATCTTCATTTTGTAA--------------TGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA-----TTGA----------------------------AAGATTT----------------------------------TTAAA...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AATATTGGTTGTATGAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTTGTAA--------------TGTCGATGGAAATATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TGTAA--------------TGTCGATGGAAATATTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GTAA--------------TGTCGATGGAAATATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....TTTGTTGATATAAA-----------------------------------------------ATTGTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TGTCGATGGAAATATTGGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AATATAAGAGACAATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGGTTATTTTTAAAGAA--------------------------------------------------TTCTTATTTTAATAA-----------------------------------TTATAATTATAATAATTA-----------------------------------------------------------------TATTATTAT----TTATATTATTATTAATTATTATAATAATAA--------TAA-TTATAATAATAATA--------------AT-----------------------TATAATAATTA------------------------------------------------------------------------------TAATATATAATAATAATTAAATATATGTAACTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTACAGA------TA---------GAACTCCCACCAACTTTACC--------------CAAATCATA------------------------------GGGAAAT-T--------TAGAACAAAATTGGCAACAG-------------TTTATACCCGTTATTC----------------------------------ATAGAGTAAAGGAGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CAGTTTTGAA-------AA-----------------------------------------------CTGT-ATTGATATTTACATTTTTTTTATGAGTTTTTTAAATTTTCTATC-----------------------------------TATT-TACAAAACGCTTTCTTGCCATTCTTC-------------------------------------------------------------A--------CTT-TTGTAA-AATGTTT--------------TGATAT---------------TTTTTCATTATTTTAT--------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTGTAAATTT-C-------------------------------TATCGATCTG---C--GG---------AAAATCTTAATTGCCACGCCCACTATAAACCCCAAAAACCGCC------------------------------AAAAACTGC--------CACGCCCA---------CACTTTTGAA----------AAATA------------------------------ATTTA-------------AT-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGC--------CACGCCCA---------CACTTTTGA.........................................................................21200.35707000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCC------------------------------AAAAACTGC--------CACGC..............................................................................................21200.05100100000000
..................................................................................................................................................................................................................................................A--------CTT-TTGTAA-AATGTTT--------------TGATAT---------------TTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTGC--------CACGCCCA---------CACTTTTGA.........................................................................26200.05101000000000
droEug1
ATATATTCAAATAGTTTTT---------TTCACTTTAAAAAATTTTACTTTTTGAATTGAAATATTTA-------------------------------------------------------------------------------------------------------------------------------------------------CGAGTATATTTAAAACCATA-TATTTGTAA--------CAT-ATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACTGTGCATTACATTTAAAATTAGTGGCAAAGAAA----------------------------------------------------------------------------TTAT-------------------------------TAGCCAATACTT--TATT---------CATTTT---------------AATTT-CCCGCCAAAAATTTTA------------------------------ACAAAAC-ACTCGCATCGATGGTCC-----ACTGC------------TTTATTATACCCGTTACTC----------------------------------GTAGAGTAA-------SizeHit CountTotal NormTotal
No Reads
droBia1
ATTGATTTATATATTAA------------------------------------------------------AGCAAAATTTTTAT------------------------------------AT----------------------------ATTTGGTAAAATATTAATTAA----------------------------TTTAATTAA-TATTAATATTAATTAATTTAATT-TGCAGAAAAGTCAGGGTTATTTAATAATAATTAAT--------------ATTTAA---------------TATTACTCTTTTCAGAAAATACATTTGTAGTTTTGAAGAATTAGGTGTTAG---------------------------------------------------------------------------------------------------------------------------------TAAA----------------------------------------------------------------------------TAC-----------------------------------------------------------------------------------------------------CTAACCTTTAATTTATTTAATTTAATGCACACAAGAAT-G-CAGTTTTTGGGG-----TCGGAAACGCT-----------TTTTTTACCTT------------------------------TTTAAGTAAAGTAAAGTAA-------SizeHit CountTotal NormTotal
No Reads
droTak1
ATAATATTTTACAAACGAA-----------------------------------------------ATCT-AACCAAGAG-----------------------------------------------------------------------------------------------------------------------------------------TACCATCACCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTCTAAACAATACATTTTATTATAACGACAAAAAAAGGACGTTCATAAAAAATTTCAACCTTTGTGTAAATAGTTTTATAATTTTAAAACCTTACTTAATTTCAAAAATCCACTTTTAAGTAGTTATAAATTTTGTGAAATTAACATTAATGAGGTG---CTTGTG-----------------------------------ATAATCACAATAAAAATAAAATTTAATTCAGTTA------------------------------------A---------CT----------TATTTTTATACCCGTTACTC----------------------------------GTAGAGTAA-------SizeHit CountTotal NormTotal
No Reads
droEle1
ACTTCTGACT----------------------------------------------------------GA-AATTA-AAAAACATTTTTCTTATGAACTC-----------------------AACCAAACTG------------------------------------------------------------------------------------TAA------------------------------------------------------------------------------------CTTTT----------------------------------------------------------------------------------------------------------------------------TTCAATTTGTTTTTTCGCTTTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCCATAACTTTTA------------------------------CAA-----C--------CACGGACG---------GATTTCTTAAATGTTCTTTATACCCGTTACTC----------------------------------GAAGAGCAA-------SizeHit CountTotal NormTotal
No Reads
droRho1
ATGTTGTTATTGATATAAC-----------------------------------------------AACA-AGCAAAACTGAAAT--TTCT---------------------GATGTAGAGAG----------------------------ATTTCATAAAACAGTAAATGA-AA------------------------AATTAAGAAT----TATAAATATTGAAACAGACA-TAGAAAA----------------------------------------------------------------------------------------------------------------------------------------------TAACCTAACAAAAT------------------------------------TTGAAACTATTCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTATAATCATA---------AATCAA---------------AACTT-AATACCACAGGCAAAA-------------------------------------------------CTGCTG---------CAG----------ATATTTATACCCGTTACTC----------------------------------GTAGAGTAA-------SizeHit CountTotal NormTotal
No Reads
droFic1
ATATTATTATTGATACTAA-----------------------------------------------CTCG-GACGATATAACAGT---------------------------TATGTTAAAAAATGTAAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATGTTATAATTGATACAAG-----------------------------------------------CTCT-GATGGCATATCAAT---------------------------TTTATTAAAAAACGTGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ATATTATCATCGATACAAA-----------------------------------------------CTCA-GAAAAAATAACTAT---------------------------TTTGTTAAAAAAAGTATGTACAT---------------CG------------------------------------------------TTTTAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATATTGTCGTCGATACAAA-----------------------------------------------CTCA-GAGAAAATTGGTGT---------------------------ATTGTTAAAAAATGTATGTAAA--------------------T--------------------------------------------ATTTTAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACATAATAATTGATATAAG-----------------------------------------------CTCA-GACGGCATTACAGC---------------------------GTTGCTGAAAAATGTGAGTTAGG---------------TGCTT--------------------------------------------CCTCTAACAT----TGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......AATTGATATAAG-----------------------------------------------CTCA-GACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
droPer2
ACATAATAATTGATATAAG-----------------------------------------------CTCA-GACGGCATTACAGC---------------------------GTTGCTGAAAAATGTGAGTTAGG---------------TGCTT--------------------------------------------CCTCTAACAT----TGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTATTG------ATTCAACATTGAGTTATTAACTTTTG----------------------------GTTA-AATTTTACAAGCGT------------------------TTCGTTGTAAACATAAAATAGAATTAACTAAGGGCACTTAATATA-TACTAAATATATATTGGTTTTATTCCTTTTTTGTGTATGTATGTATGTTTG-----------------------------------------------------------------------------------------------------GTTACCGTTTATA--------------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------------------------------------------CTGTTGGGTTCATTCA-----------------------------------------------------------------------------T-T--------TACATCTA---------CCCTAAAT----AATATTTATACCATACACCC----------------------------------ATAGGATGA-------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GGGCAGCAGTTTTAATAAT-----------------------------------------------TTTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAGACACACACACACATTCATGGCGTCTG------------------------------------------------------------------------------CTTCGCATTGTAACAGCATGGTAACTGCGACATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTAATGCTA--TTTT---------AGTT-------------------------------------------------------------------------------------------------------------------TTTTTTTATACCCTGAACCAATTAAAAATGGGTATAAGGGTATATTGTATTTGTGCAAAATCA-------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------AGTT-------------------------------------------------------------------------------------------------------------------TTTTTTTATACCCTGAACC...................................................2420.501000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGCATGGTAACTGCGACATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................2620.501000000000000000000000000000000000010000000000000000000000000000
..................T-----------------------------------------------TTTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAGACACACACACACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501000000000000000000000000000000000010000000000000000000000000000
....................................................................TT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAGACACACACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................CACACACACATTCATGGCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000000000000000001000000000000000000000000000000000
..................................................................TTTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAGACACACACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000000000000000000000000010000000000000000000000000000000000000
.....................................................................T-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAGACACACACACACATTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGCATGGTAACTGCGACATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------T.......................................................................................................................................................................................................................2720.501000000000000000000000000000000000010000000000000000000000000000
...................................................................TTT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAGACACACACACACATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ATGGCGTCTG------------------------------------------------------------------------------CTTCGCATTGTAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................2620.501000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AGACACACACACACATTCATGGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTGTAACAGCATGGTAACTGC......................................................................................................................................................................................................................................................................................................................................................................................................2520.501000000000000000000000000010000000000000000000000000000000000000
....................................................................TT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACATAGACACACACACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATGGTAACTGCGACATTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTC....................................................................................................................................................................................................................2730.331000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TCTG------------------------------------------------------------------------------CTTCGCATTGTAACAGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................2430.331000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTAATGCTA--TTTT---------AGTT-------------------------------------------------------------------------------------------------------------------TT....................................................................2530.331000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTAATGCTA--TTTT---------AGTT-------------------------------------------------------------------------------------------------------------------T.....................................................................24100.303000000000000000000000000000000000030000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTAATGCTA--TTTT---------AGTT-------------------------------------------------------------------------------------------------------------------TTG...................................................................2640.251000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGTATAAGGGTATATTGT......................27200.204000000000000000000000000000040000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGTATAAGGG..............................19200.051000001000000000000000000000000000000000000000000000000000000000
droMoj3
ATAATTTATTTTTAATTTT-----------------------------------------------TTCT-CACGAAATTTG--T---------------------------GTTGTGGAAATATATATTTTTTA-----------------------------------------------------------------TTTTAAAAAA---CTTGTATATTCAGGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTATGAACACTATATTTTAATATAACATTTATT--------------------------------------AATTTTA-----------------------ATATTAAAACATG-T-------------------------------TATATATTTC---CGATT---------AGTTTC---------------CCT------------------------------------------------------------------------------------------------TTTATTATACCCTGAACCCATTGAAAATGGG-------------------AAATCAGGGTAT-------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------TTTATTATACCCTGAACCCA.................................................21200.051100000
droGri2
ATATCTTAATTGACACGAA-----------------------------------------------CTCG-GCTGGAATTTCAGT---------------------------TCTACTAAAAAATGTGAGCTCGA-----------------------------------------------------------------TTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:57 PM