ID:

dsi_8811

 Coordinate:

3r:412884-413037 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.2 -22.0 -21.9

Flybase annnotation

exon [3r_413038_413616_-]; CDS [3r_413038_413616_-]; exon [3r_412588_412883_-]; CDS [3r_412588_412883_-]; intron [3r_412884_413037_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGGGAGTTTCCGCCTCGATTGCCGGACGTCAAGGACGACCACGTAGAAGGTATGTTTCGTGCCTTACAAATTCAACTGATCTCAGCCTTAAACCAAAAGACTTACATTTCTTTGGGTTTCTAAGTAAATACAATATGTATAAAATGCATAATTATTAAAACAATGATCATTTGCCGCATACTGAATACATATTTTTATTACAGATCTGTTGCAAGAAACGCTGCTTCTAGCGGTGGGGCAGTTAACAATCCTG
**************************************************(((((((((((((....(((((....(((....))).((((((((.(((((........))))).))))..)))).........(((((((...)))))))((((((.....)))))).)))))..))))...))).))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
................................AGGACGACCACGTAGAAG............................................................................................................................................................................................................ 18 0 1 17.00 17 11 4 2 0 0 0 0 0 0 0 0 0
...............................AAGGACGACCACGTAGAAGATCTGTT..................................................................................................................................................................................................... 26 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGCAAGAAACGCTGCTTCTAGCGGT................... 25 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0
.......................CGGACGTCAAGGACGACC..................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................CGATTGCCGGACGTCAAGGACGA....................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........TCCGCCTCGATTGCCGGACGTCAAGGACGA....................................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................ACCACGTAGAAGGTATGTTTCGTG................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........CCGCCTCGATTGCCGGACGTCAAGGA.......................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................GCCGGACGTCAAGGACGA....................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................CGTAACGGACGACCACG.................................................................................................................................................................................................................. 17 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GATCATTTGCCGCATACTG...................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTGTTGCAAGAAACGCTGCTTCTAG....................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................CAAGGACGACCACGTAGAAG............................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................GTCAAGGACGACCACGTAGAAGATC......................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................CGTCAAGGACGACCACGTAGAAGATC......................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........CGCCTCGATTGCCGGACGTCAAGGACG........................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CATACTGAATACATAGGT........................................................... 18 2 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................TATCGCATACTGAATACATA.............................................................. 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GCATACTGAATACATAGGT........................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................ATCGCATACTGAATACATA.............................................................. 19 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................TCTTTGGGTTTCTATCTATATA........................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................CCACGTAGAAGATCTGTTGC................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCGAACAATGATCATCTGCC.............................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CTCATACTGAATACATAGGT........................................................... 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GCATACTGAATACATAGG............................................................ 18 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CCGCATACTCGATACA................................................................ 16 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
.....................GCCGGGCGTCAAGCACG........................................................................................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................TAATTATTAAAACAGGGA....................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................ATACTGAATACATAG............................................................. 15 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................CAGACTTACATTTCT.............................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................ATACTGAATACATAGGT........................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................CACGTAGAAGATCTGTTG.................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTCCCTCAAAGGCGGAGCTAACGGCCTGCAGTTCCTGCTGGTGCATCTTCCATACAAAGCACGGAATGTTTAAGTTGACTAGAGTCGGAATTTGGTTTTCTGAATGTAAAGAAACCCAAAGATTCATTTATGTTATACATATTTTACGTATTAATAATTTTGTTACTAGTAAACGGCGTATGACTTATGTATAAAAATAATGTCTAGACAACGTTCTTTGCGACGAAGATCGCCACCCCGTCAATTGTTAGGAC
**************************************************(((((((((((((....(((((....(((....))).((((((((.(((((........))))).))))..)))).........(((((((...)))))))((((((.....)))))).)))))..))))...))).))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
................................................................................AGAGTCGGAATTTGGTTTTCTGAATGT................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................TTGGGTTTCTGAAACTAAAGA.............................................................................................................................................. 21 3 6 0.83 5 0 4 0 0 1 0 0
............................................................................................TGGGTTTCTGAAACTAAAGA.............................................................................................................................................. 20 3 14 0.71 10 0 4 4 1 0 1 0
......................................................................TAAGTTGACCAGAGT......................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 1 0 0 0
..........................TGCGGTACCTGCTGGAGCA................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 1 0 0 0 0
............CGGACCTAACAGCCTG.................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0
....................................................................................................................CAAAGATTCGTGCATGTTA....................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:412834-413087 - dsi_8811 AAGGGAGTTTCCGCCTCGATTGCCG------GACGTCAAGGACGACCACGTAGAAGGTATGTTTCGTG-----------------------CCTTA---------CAAATTCAACTGATCTCAGCCTTAAACCAAAAGACTTACATT-TCTTTGGGTTTCTAAGTAAA----TACAATA---------------TGTATAAAA--------------------------------------------TGCAT----AATTATTAAAACAATGA------------------------------------------------------------T----CATT-TG-CCG-CATACTGAATACA-----T---A-----TTTTTATTACAGATCTGTTGCAAGAAACGCTGCTTCTAGCGG------T---GGGGCAGTTAA---------C------AATCCTG
droSec2 scaffold_6:578581-578811 - AAGGGAGTTTCCGCCTCGATTGCCG------GACGTCAAGGACGACTACGTAGAAGGTATGTTTCGTG-----------------------CCTTA---------CAAATTCAACTGATCTCAGCCTTAAACC------------------------TTCTAAGTAAA----TACAATA---------------TGTATAAAA--------------------------------------------TGCAT----AATTATTAAAACAATGA------------------------------------------------------------T----CATT-TG-CCG-CATACTGAATACA-----T---A-----TTTTTATTACAGATCTGTTGCAAGAAACGCTGCTTCTAGCGG------T---GGGGCAGTTAA---------C------AATCCTG
dm3 chr3R:464512-464789 - AAGGGAGTTTCCGCCTCGATTGCCG------GACGTCAAGGACGACCACGTAGAAGGTATGTGTCGTG-----------------------CCTTAGAAAATGCTCAAATTTAACTGATCTGTGCCT-AAACCCAAAGACTTACATTTTCTTTG--------CGTAAAGTCTTACAATTACTTTATTTTGCATATGTATAAAA--------------------------------------------TGCATACATAATTTTTAAAACAATGA------------------------------------------------------------T----CATT-TG-ACA-CATACTGAATACA-----T---A-----TTTTTATTACAGATCTGTTGCAAGAAACGCTGCTTCTAGCAG------T---GGGGCAGTTAA---------C------AATTCTG
droEre2 scaffold_4770:770912-771207 - AAGGGAGTTTCCTCCTCACTTGCCA------GCCGTCAAGGACGACCACGTCGAAGGTATGTTTAGTGTGCTATTATATGGGAAATGTGCGCCTTATAATATGTAAAAATTTAACTGAACAATGCTTAAAACCCAACGGCATAATTTTTTTG-----TTCCTAGTAAA----TATAATAATTT--TTTTGCATA--GATAAAG--------------------------------------------TGCATAAATTAGTA-TAAAAAAATTA------------------------------------------------------------T----AATT-TG-AAA-AATACTCATTATA-----T---A-----TTATTATTACAGATCTGCAGTTAGAAACGCTGCTTCTAGTGG------T---GGGGCAGGTAA---------A------AATTCTG
droYak3 v2_chr3R_random_026:3754-4015 - AAGGGAGTTTCCTCTTCACTTTCCA------GACGTCGGGGACGA---------AGGTATGTTTAGTGTGCTATTATATGGCAAATTTGTGCCTTACAAGATGTTAAAATCTAACAGA------------------------------------GATTTCTAAGTAAA----TATAATTATTTTATTTTACATA--AATTAAA--------------------------------------------TGTATACATTAATACTAAAAAAATTA------------------------------------------------------------T----GATT-TT-AAG-GATAGTCATTATC-----TATTC-----TTTTTATTACAGATCTGCTGTTAGAAACACTGCTTCTAGCGG------T---GGGGCAGGTAA---------C------AATCCTG
droEug1 scf7180000409759:400423-400483 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTACAGATCTGCTGTAAGGAACGCTGCTGCTGGCGG------T---GGGGTTGCTAA---------T------AATTCTG
droBia1 scf7180000302411:177641-177798 - AAGGGAGTCTCCGCCTCACTCGCTG------GACGTCCGGGACGACCACGGGGAAGGTATGTCTAGCG-----------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA------------------------------------------------------------CTTTTCATGATA-AT--GATACTCATAACT--------AC------TTGTTTCATAGATCTGCTGTTAAAAACGCTGCTGGTGGGGC------T---GTGGCTGTTAA---------C------AATAATG
droTak1 scf7180000415789:880196-880355 - AAGGGAGTCTCCGCCGCTCTCGCCG------GACGCCAGGGACGACCACGCGGAAGGTATGCTTAGTA-----------------------CTTTG---------G-------------------------------------------------TTTTCC----------------------------------------------------------------------------------------------------CTTAAGCA-------------------------------------------------------------------------------A-GATACTCATTATC--------AC-----ATTTTATTATAGATCTGCTGCAAGGAACGCTGCTGCTGGCGG------T---GGGGCTGCCAA---------C------AATTCTG
droEle1 scf7180000491104:2206582-2206655 - TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT-TG-AC--GATACTCATCATT--------AC-----TTTGTATTACAGATCTGCTGTCAGGAACGCTGCTGCTG---------------------CGAA---------C------AACTCTG
droRho1 scf7180000777453:12233-12364 - AAAC-AATATAAGTTTAACTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----ATTTATATGGGTAATCT------------------------------------------------------------TTT-TCAGC-TG-AAGAAATACTCATCAAT--------AC-----ATTTTATTTCAGATCTGCTCTTAGGAACGCTGCTGCTGGCGG------A---GGGGCTGCCAA---------A------AACTCTG
droFic1 scf7180000453903:59257-59477 - AAGGGCATTTCCGCATCACTCGCCG------GTCGCCAGGGACGCCCACGAGGAAGGTAAGTTGAAA------------------------------------------------------------------------------------------------GAACA----TAGAACA---------------TATTCAAGTTGAGAAGTTTCGAATAACAAGAATTTGTCATTATGTGTGTTATTTATAT----ATTTTCTTTTC----AA------------------------------------------------------------T----GCAC-TA---G-TATATTAAATCAG-----T---G-TTATTTCTAATTACAGATCTGCTCTCAGAAACGCTGCTGCTG---------------------CTAA---------T------AATACCG
droKik1 scf7180000302634:147032-147215 - AAGGGTATATCCGCCTCACTCGCTG------GACGTCGGGGACCACAACGCGGAAGGTGAGCTAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATTA------------------------------------------------------------TTT-CTATTA-AAATAAAATACTGACAATGGTTTTTTTCT-----ATTTCTTTCTAGATCTGCTACCAGGAATTCTGCTGCTGCTGCTAAGGGTGGCGGTGCTGGTGC---------TGGCTCCGCCCCCG
droAna3 scaffold_13340:13289943-13290211 + dan_3068 AAGGGAATTTCAGCTTCGCTTGCCG------GAGGAAGGGGACGTCCTCGTGGAAGGTAGGTTCCTAA------------------------------------------------------------------------------------TGGGTTTCGGGGGAGG----ACTA-----TTTATATTCAATG--AATTAAT--------------------------------------------TCAATCAATGATTAATAATTAATTCTTGATTAGTAAACTGTTTGAAAATTTCAATATCAAACTCAGAAAAAATAAGAAAAATTTATT----AATT-TG-AAA-T------CTCCTT--------CG-----TTTTTATTTAAGATCTGCTGCTCGAGATGCTGCTGCTGCGGG------T---CGAGCTGCTCC---------T------GGCTCTG
droBip1 scf7180000396691:2161030-2161088 + AAGGGAATTTCAGCTTCGATTGCCG------GAGGAAGGGGACGTCCTCGTGGAAGGTAAGTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:20329242-20329412 - AAGGGGGTGTCCGCTTCCCTTGCCG------GACGACGAGGACGTCCACGTGGAAGGTAAGTTCTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACAA------------------------------------------------------------AAT-CATTAA-AAATCAAATACCAATACAA--------ACT----TTTCCTTTACAGATCTGCTGCTAGGGCTGCTGCTGCTGCTGG------GGGAGGTGCTGCTTC---------GGGCTCCAATGCAG
droPer2 scaffold_3:3081006-3081176 - AAGGGGGTGTCCGCTTCCCTTGCCG------GACGACGAGGACGTCCACGTGGAAGGTAAGTTCTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACAA------------------------------------------------------------AAT-CATTAA-AAATCAAATACCTATACAA--------ACT----TTTCCTTTACAGATCTGCTGCTAGGGCTGCTGCTGCTGCTGG------GGGAGGTGCTGCTTC---------GGGCTCCAATGCAG
droWil2 scf2_1100000004943:4476745-4476893 - AAGGGTGTATCAGCCTCCCTATCTG------GACGT---GGACGCCAACGGGGACGGTAAGTCAAAGACAATTTTATGAAGTGAACGCACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACAATTCCC---TCTTCCG-----TTTTTCTCACAGATCTGCTGCT------GCTGCTCCT---------------GGGGCTGG------------C------AACTCTG
droVir3 scaffold_13047:17176673-17176860 + AAGACAGTGAAAGCTGCTGCTGGTGGACGCGGACGCAAAGGACGTGCACGTGGAAGGTAAGTTAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTT----CTTTATTTATCCAAGAA------------------------------------------------------------T----GCGT-TG---G-TATATTATATCTT--------GT-----TTTCTAATTCAGATCTGCTGTACGTGCCGCTGCTGCTGCTGT------T---GATGCTGCTTCTGCTGCCACG--CATCGCTCGCG
droMoj3 scaffold_6540:14459725-14459881 - ACGGTGGCGGCTGCAGCCACTGG---GCGCGGACGCAAAGGACGTGCACGGGGAAAGTAAGTTGCAAA-----------------------GCTTC---------C------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTA------------------------------------------------------------T----TGTA-TA-CCC-TATATTAATGTTA--------AA-----TTTGTGTTGTAGATCTGCTCTACGTGCCGCTACTACTGCTGT------T---AATGCTGCTA---------------------CTG
droGri2 scaffold_14906:12249158-12249239 + TAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----TATTT-----GCCTCCTTGCAGATCTGCTGTACGAGCTGCTGCTGCTGCTGC------T---GCTGCAGGTGGCGCCGTCACT------CA--TCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGGGAGTTTCCGCCTCGATTGCCG------GACGTCAAGGACGACCACGTAGAAGGTATGTTTCGTG-----------------------CCTTA---------CAAATTCAACTGATCTCAGCCTTAAACCAAAAGACTTACATT-TCTTTGGGTTTCTAAGTAAA----TACAATA---------------TGTATAAAA--------------------------------------------TGCAT----AATTATTAAAACAATGA------------------------------------------------------------T----CATT-TG-CCG-CATACTGAATACA-----T---A-----TTTTTATTACAGATCTGTTGCAAGAAACGCTGCTTCTAGCGG------T---GGGGCAGTTAA---------C------AATCCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................AGGACGACCACGTAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................18117.0017112400000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAAACGCTGCTTCTAGCGG------T---..................................2512.00200000001001000000
.......................CG------GACGTCAAGGACGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
................CGATTGCCG------GACGTCAAGGACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.........TCCGCCTCGATTGCCG------GACGTCAAGGACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000000000010000
............................................ACCACGTAGAAGGTATGTTTCGTG-----------------------.....................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
..........CCGCCTCGATTGCCG------GACGTCAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
.....................GCCG------GACGTCAAGGACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...............................................................................................................................................................................................................................................................................GA------------------------------------------------------------T----CATT-TG-CCG-CATACTG...........................................................................................................1911.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTGCAAGAAACGCTGCTTCTAG...............................................2611.00100001000000000000
....................................CAAGGACGACCACGTAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
...........CGCCTCGATTGCCG------GACGTCAAGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................G-CATACTGAATACA-----T---A-----GG....................................................................................1890.11100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................ATACTGAATACA-----T---A-----G.....................................................................................15130.08100000000010000000
droSec2
AAGGGAGTTTCCGCCTCGATTGCCG------GACGTCAAGGACGACTACGTAGAAGGTATGTTTCGTG-----------------------CCTTA---------CAAATTCAACTGATCTCAGCCTTAAACC------------------------TTCTAAGTAAA----TACAATA---------------TGTATAAAA--------------------------------------------TGCAT----AATTATTAAAACAATGA------------------------------------------------------------T----CATT-TG-CCG-CATACTGAATACA-----T---A-----TTTTTATTACAGATCTGTTGCAAGAAACGCTGCTTCTAGCGG------T---GGGGCAGTTAA---------C------AATCCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................CCG------GACGTCAAGGACGACTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
dm3
AAGGGAGTTTCCGCCTCGATTGCCG------GACGTCAAGGACGACCACGTAGAAGGTATGTGTCGTG-----------------------CCTTAGAAAATGCTCAAATTTAACTGATCTGTGCCT-AAACCCAAAGACTTACATTTTCTTTG--------CGTAAAGTCTTACAATTACTTTATTTTGCATATGTATAAAA--------------------------------------------TGCATACATAATTTTTAAAACAATGA------------------------------------------------------------T----CATT-TG-ACA-CATACTGAATACA-----T---A-----TTTTTATTACAGATCTGTTGCAAGAAACGCTGCTTCTAGCAG------T---GGGGCAGTTAA---------C------AATTCTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..GGGAGTTTCCGCCTCGATTGCCG------GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGAAACGCTGCTTCTAGCAG------T---GGGG..............................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GTATGTGTCGTG-----------------------CCTTAGAAAATGC........................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
........................................................GTATGTGTCGTG-----------------------CCTTAGAAAATGCT.......................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ACAATGA------------------------------------------------------------T----CATT-TG-ACA-CATACTG...........................................................................................................2412.0020000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.................GATTGCCG------GACGTCAAGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
....................TGCCG------GACGTCAAGGACGACCACGTA............................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................ATTGCCG------GACGTCAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGCAG------T---GGGGCAGTTAA---------C------AATAAA.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...GGAGTTTCCGCCTCGATTGCCG------GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTGCCG------GACGTCAAGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCTGCTTCTAGCAG------T---GGGGCA............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGCCG------GACGTCAAGGACGACCACG..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................GATTGCCG------GACGTCAAGGACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCCG------GACGTCAAGGACGACCACGTAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GATTGCCG------GACGTCAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................................GTATGTGTCGTG-----------------------CCTTAGAAA............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCCGCCTCGATTGCCG------GACGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ATAAAA--------------------------------------------TGCATACATAAT.............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACGTCAAGGACGACCACGTAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CCGCCTCGATTGCCG------GACGTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCCG------GACGTCAAGGACGACCACGTA............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AACAATGA------------------------------------------------------------T----CATT-TG-ACA-CA................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCGATTGCCG------GACGTCAAGGACGACCA................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CG------GACGTCAAGGACGACCACG..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCCG------GACGTCAAGGACGACCACGTAGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCG------GACGTCAAGGACGACCACGTAGAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCG------GACGTCAAGGACGACCACGTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GTCAAGGACGACCACGTAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................G------GACGTCAAGGACGACCACGTAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCCTCGATTGCCG------GACGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGATTGCCG------GACGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AAGAAACGCTGCTTCTAGCAG------T---GGGGC.............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAAACGCTGCTTCTAGCAG------......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TT-TG-ACA-CATACTGAATACA-----................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCTTCTAGCAG------T---GGG...............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAG------T---GGGGCAGTTAA---------C------AATTCT.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AG------T---GGGGCAGTTAA---------C------AATT...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............TCGATTGCCG------GACGTCAAGGACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........TCCGCCTCGATTGCCG------GACGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTTCCGCCTCGATTGCCG------GAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAGGGAGTTTCCGCCTCGATTGCCG------GAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------T---GGGGCAGTTAA---------C------.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CGTCAAGGACGACCACGTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGGAGTTTCCGCCTCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCGATTGCCG------GACGTCAAGGACGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CG------GACGTCAAGGACGACCACGTAGAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGTTGCAAGAAACGCT.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTGCCG------GACGTCAAGGACGACCACGTA............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGATCTGTTGCAAGAAAC..........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTTGCAAGAAACGC........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................GTCAAGGACGACCACGTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................GACGACCACGTAGAAGGTATGT..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGCCG------GACGTCAAGGACGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....GAGTTTCCGCCTCGATTGCCG------GACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGGGAGTTTCCGCCTCGATTGCCG------GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACGCTGCTTCTAGCAG------T---GGGGCA............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTTGCAAGAAACGCT.......................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GTATGTGTCGTG-----------------------CCTTAGAA.............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAGGGAGTTTCCTCCTCACTTGCCA------GCCGTCAAGGACGACCACGTCGAAGGTATGTTTAGTGTGCTATTATATGGGAAATGTGCGCCTTATAATATGTAAAAATTTAACTGAACAATGCTTAAAACCCAACGGCATAATTTTTTTG-----TTCCTAGTAAA----TATAATAATTT--TTTTGCATA--GATAAAG--------------------------------------------TGCATAAATTAGTA-TAAAAAAATTA------------------------------------------------------------T----AATT-TG-AAA-AATACTCATTATA-----T---A-----TTATTATTACAGATCTGCAGTTAGAAACGCTGCTTCTAGTGG------T---GGGGCAGGTAA---------A------AATTCTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......GTTTCCTCCTCACTTGCCA------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
................................................................................................................................................................................................TA--GATAAAG--------------------------------------------TGCATAAATTAGT............................................................................................................................................................................................................2211.0010000100
droYak3
AAGGGAGTTTCCTCTTCACTTTCCA------GACGTCGGGGACGA---------AGGTATGTTTAGTGTGCTATTATATGGCAAATTTGTGCCTTACAAGATGTTAAAATCTAACAGA------------------------------------GATTTCTAAGTAAA----TATAATTATTTTATTTTACATA--AATTAAA--------------------------------------------TGTATACATTAATACTAAAAAAATTA------------------------------------------------------------T----GATT-TT-AAG-GATAGTCATTATC-----TATTC-----TTTTTATTACAGATCTGCTGTTAGAAACACTGCTTCTAGCGG------T---GGGGCAGGTAA---------C------AATCCTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................TCCA------GACGTCGGGGACGA---------AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGCGG------T---GGGGCAGGTAA---------C------AATCC..2720.50101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAGCGG------T---GGGGCAG...........................1820.50101000000000
droEug1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTACAGATCTGCTGTAAGGAACGCTGCTGCTGGCGG------T---GGGGTTGCTAA---------T------AATTCTGSizeHit CountTotal NormTotal
No Reads
droBia1
AAGGGAGTCTCCGCCTCACTCGCTG------GACGTCCGGGACGACCACGGGGAAGGTATGTCTAGCG-----------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA------------------------------------------------------------CTTTTCATGATA-AT--GATACTCATAACT--------AC------TTGTTTCATAGATCTGCTGTTAAAAACGCTGCTGGTGGGGC------T---GTGGCTGTTAA---------C------AATAATGSizeHit CountTotal NormTotal
No Reads
droTak1
AAGGGAGTCTCCGCCGCTCTCGCCG------GACGCCAGGGACGACCACGCGGAAGGTATGCTTAGTA-----------------------CTTTG---------G-------------------------------------------------TTTTCC----------------------------------------------------------------------------------------------------CTTAAGCA-------------------------------------------------------------------------------A-GATACTCATTATC--------AC-----ATTTTATTATAGATCTGCTGCAAGGAACGCTGCTGCTGGCGG------T---GGGGCTGCCAA---------C------AATTCTGSizeHit CountTotal NormTotal
No Reads
droEle1
TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT-TG-AC--GATACTCATCATT--------AC-----TTTGTATTACAGATCTGCTGTCAGGAACGCTGCTGCTG---------------------CGAA---------C------AACTCTGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAC-AATATAAGTTTAACTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----ATTTATATGGGTAATCT------------------------------------------------------------TTT-TCAGC-TG-AAGAAATACTCATCAAT--------AC-----ATTTTATTTCAGATCTGCTCTTAGGAACGCTGCTGCTGGCGG------A---GGGGCTGCCAA---------A------AACTCTGSizeHit CountTotal NormTotal
No Reads
droFic1
AAGGGCATTTCCGCATCACTCGCCG------GTCGCCAGGGACGCCCACGAGGAAGGTAAGTTGAAA------------------------------------------------------------------------------------------------GAACA----TAGAACA---------------TATTCAAGTTGAGAAGTTTCGAATAACAAGAATTTGTCATTATGTGTGTTATTTATAT----ATTTTCTTTTC----AA------------------------------------------------------------T----GCAC-TA---G-TATATTAAATCAG-----T---G-TTATTTCTAATTACAGATCTGCTCTCAGAAACGCTGCTGCTG---------------------CTAA---------T------AATACCGSizeHit CountTotal NormTotal
No Reads
droKik1
AAGGGTATATCCGCCTCACTCGCTG------GACGTCGGGGACCACAACGCGGAAGGTGAGCTAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATTA------------------------------------------------------------TTT-CTATTA-AAATAAAATACTGACAATGGTTTTTTTCT-----ATTTCTTTCTAGATCTGCTACCAGGAATTCTGCTGCTGCTGCTAAGGGTGGCGGTGCTGGTGC---------TGGCTCCGCCCCCGSizeHit CountTotal NormTotal
No Reads
droAna3
AAGGGAATTTCAGCTTCGCTTGCCG------GAGGAAGGGGACGTCCTCGTGGAAGGTAGGTTCCTAA------------------------------------------------------------------------------------TGGGTTTCGGGGGAGG----ACTA-----TTTATATTCAATG--AATTAAT--------------------------------------------TCAATCAATGATTAATAATTAATTCTTGATTAGTAAACTGTTTGAAAATTTCAATATCAAACTCAGAAAAAATAAGAAAAATTTATT----AATT-TG-AAA-T------CTCCTT--------CG-----TTTTTATTTAAGATCTGCTGCTCGAGATGCTGCTGCTGCGGG------T---CGAGCTGCTCC---------T------GGCTCTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCGGG------T---CGAGCTGCTCC---------T------GGCTCTG2511.001100000
...................TTGCCG------GAGGAAGGGGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......ATTTCAGCTTCGCTTGCCG------GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCTGCTCGAGATGCT.......................................................2011.001000010
droBip1
AAGGGAATTTCAGCTTCGATTGCCG------GAGGAAGGGGACGTCCTCGTGGAAGGTAAGTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAGGGGGTGTCCGCTTCCCTTGCCG------GACGACGAGGACGTCCACGTGGAAGGTAAGTTCTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACAA------------------------------------------------------------AAT-CATTAA-AAATCAAATACCAATACAA--------ACT----TTTCCTTTACAGATCTGCTGCTAGGGCTGCTGCTGCTGCTGG------GGGAGGTGCTGCTTC---------GGGCTCCAATGCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................TGCTAGGGCTGCTGCTGCTG................................................2011.0010000000001
..................................................................................................................................................................................................................................................................................................................................................................CCAATACAA--------ACT----TTTCCTTTACAG..........................................................................2411.0010010000000
......................................AGGACGTCCACGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGCTTC---------GGGCTCC.......1811.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTAGGGCTGCTGCTG...................................................2011.0010100000000
droPer2
AAGGGGGTGTCCGCTTCCCTTGCCG------GACGACGAGGACGTCCACGTGGAAGGTAAGTTCTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACAA------------------------------------------------------------AAT-CATTAA-AAATCAAATACCTATACAA--------ACT----TTTCCTTTACAGATCTGCTGCTAGGGCTGCTGCTGCTGCTGG------GGGAGGTGCTGCTTC---------GGGCTCCAATGCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................ACGAGGACGTCCACGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGG------GGGAGGTGCTGCT.........................2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTAGGGCTGCTGCT....................................................2011.001010000
droWil2
AAGGGTGTATCAGCCTCCCTATCTG------GACGT---GGACGCCAACGGGGACGGTAAGTCAAAGACAATTTTATGAAGTGAACGCACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACAATTCCC---TCTTCCG-----TTTTTCTCACAGATCTGCTGCT------GCTGCTCCT---------------GGGGCTGG------------C------AACTCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................GACGT---GGACGCCAACGGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...................................T---GGACGCCAACGGGGACG........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................CTGCT------GCTGCTCCT---------------GGGGCTGG------------C------.......2311.00100100
droVir3
AAGACAGTGAAAGCTGCTGCTGGTGGACGCGGACGCAAAGGACGTGCACGTGGAAGGTAAGTTAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTT----CTTTATTTATCCAAGAA------------------------------------------------------------T----GCGT-TG---G-TATATTATATCTT--------GT-----TTTCTAATTCAGATCTGCTGTACGTGCCGCTGCTGCTGCTGT------T---GATGCTGCTTCTGCTGCCACG--CATCGCTCGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................AGGACGTGCACGTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
AAGACAGTGAAAGCTGCTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCTGTACGTGCCGCTGCTGCT.................................................2611.001000000000001000000000000000000000000000000000000000000000000000
droMoj3
ACGGTGGCGGCTGCAGCCACTGG---GCGCGGACGCAAAGGACGTGCACGGGGAAAGTAAGTTGCAAA-----------------------GCTTC---------C------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTA------------------------------------------------------------T----TGTA-TA-CCC-TATATTAATGTTA--------AA-----TTTGTGTTGTAGATCTGCTCTACGTGCCGCTACTACTGCTGT------T---AATGCTGCTA---------------------CTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................TATTAATGTTA--------AA-----TTTGTGTTGTAG..........................................................................2511.001100000
.....................GG---GCGCGGACGCAAAGGACGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................................AGGACGTGCACGGGGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
droGri2
TAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----TATTT-----GCCTCCTTGCAGATCTGCTGTACGAGCTGCTGCTGCTGCTGC------T---GCTGCAGGTGGCGCCGTCACT------CA--TCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:30 AM