ID:

dsi_8770

 Coordinate:

3r:3267655-3268053 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.5 -45.5 -45.5

Flybase annnotation

five_prime_UTR [3r_3267553_3267658_-]; exon [3r_3267506_3267658_-]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######################################################
GAGATACTTATCTATCTCGCAGATACTTCACGCTGCTACTTCGCAACCAGGTAGTGTTGAAGGAAGCTGTGACGCTCAAAAGAGAGATTTTTTCGCAGTGTTGATTAATTATGCATTCGCTAGGAGGAGCTGCCACGCCCACCGCCGCCCAAGCTTCCAGCCCACGCTCGATCGGCTCCAGCCATATCAGTTATTCCGTTTATCTCGTCACCGCACTTGAAATACAATTTGTTGTATTCTGTATTCTTTTTGTGTGTTTTCTTCTCTCTCTGCCGCTCTCCACGCTCTTCTTGTTCAGTAATTTGTATTCTGATATTCAGTGTTAATGTAGTATATTTTTTTCTATATTTTCTTTACTTGTTTTTTGCCTATTTTGCGCGCTTTTTTGCTTTTTTCGCTGGCCGCTCGCCGCTGGAATTCGATGTGAAAAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACGCAGCTCGCACTTATTAGTA
**********************************************************************((.((.....(((((((......((((((((((((.......((....))..((((.(((((....((.....((((....(((...........)))....))))....)).....))))).)))).........))))..))))....(((((((....)))))))..............))))......))))))).....))))...(((((........((((.(((....))))))).....))))).(((((((...........)))))))........................****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 M053
female body
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
...........................................................................................................................................................................................................CTCGTTACGGCCCTTGAAA..................................................................................................................................................................................................................................................................................... 19 3 7 4.57 32 32 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGCTGGCGCGATACA........................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................ACTTGTTTTTTGCCTATT.............................................................................................................................. 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGTTCGGAGCTGGCGCGATACAGTA..................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATACAGTACGCAGCTCGCACTT....... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCGCACT........ 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCGGAGCTGGCGCG............................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTTCGGTTCGGAGC.................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTCGCACTTATTAG.. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGCTGGCGCGATACAGTACG................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................GACGCTCAAAAGAGAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACAGTACGCAGCTC............. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACAGTACGCAGCTCGCACT........ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTCGGAGCTGGCGC.............................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTCGTTACCGCCCTTGAAA..................................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGTCGTGAGACAG....................... 18 3 20 0.20 4 0 0 0 0 0 0 0 0 4 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGTCGTGAGACAGT...................... 19 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................CTCAAAAGCGGGCTTTTTTC..................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................CAGGTGGTGTTGAAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................ACGCTGGCCGCTCGC.......................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................ATATCAGTTATTCCTTAGAT........................................................................................................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGACCTTGCGCGA............................ 17 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................TTCGCTAGTAGGAGCCGG.............................................................................................................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................AATTTGTGGAATTCTGTA................................................................................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTCTATGAATAGATAGAGCGTCTATGAAGTGCGACGATGAAGCGTTGGTCCATCACAACTTCCTTCGACACTGCGAGTTTTCTCTCTAAAAAAGCGTCACAACTAATTAATACGTAAGCGATCCTCCTCGACGGTGCGGGTGGCGGCGGGTTCGAAGGTCGGGTGCGAGCTAGCCGAGGTCGGTATAGTCAATAAGGCAAATAGAGCAGTGGCGTGAACTTTATGTTAAACAACATAAGACATAAGAAAAACACACAAAAGAAGAGAGAGACGGCGAGAGGTGCGAGAAGAACAAGTCATTAAACATAAGACTATAAGTCACAATTACATCATATAAAAAAAGATATAAAAGAAATGAACAAAAAACGGATAAAACGCGCGAAAAAACGAAAAAAGCGACCGGCGAGCGGCGACCTTAAGCTACACTTTTTCACACAAAAATTAAAGTCAAAGCCAAGCCTCGACCGCGCTATGTCATGCGTCGAGCGTGAATAATCAT
******************************************************************************************************************************((.((.....(((((((......((((((((((((.......((....))..((((.(((((....((.....((((....(((...........)))....))))....)).....))))).)))).........))))..))))....(((((((....)))))))..............))))......))))))).....))))...(((((........((((.(((....))))))).....))))).(((((((...........)))))))........................********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M025
embryo
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACGCCAAGCCTCGACCGC............................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTATGTCATGCGTCGAGC............ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................CGGGTGGCGGGTTCGAAGGTCGGGTG.............................................................................................................................................................................................................................................................................................................................................. 26 3 2 0.50 1 0 1 0 0 0 0 0 0
...............GAGCGTCACTGAAGTGCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 20 3 2 0.50 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................AAAAATAGTAGTGGCGTGAACTT...................................................................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 1 0 0 0
........................................................................................ATAAAGCGTCACAACTAG......................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................................................................AATAGATAGAAAAGAAATGAA............................................................................................................................................ 21 2 3 0.33 1 0 1 0 0 0 0 0 0
.........................GGAGTGCCACGATCAAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 3 4 0.25 1 0 0 0 0 0 1 0 0
...........................................................................................................................................GTGGCCGCGGCTTCGAGGGT.................................................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0
............................................................................................................................................TGGCCGCGGCTTCGAGGGT.................................................................................................................................................................................................................................................................................................................................................... 19 3 13 0.15 2 0 0 0 0 2 0 0 0
.......................................................................................................................................................................................TATAGTCAATAAGCCACA.......................................................................................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0
........................................AGCGTTCTTCCATCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCGGCGACCTTGG................................................................................ 17 2 18 0.11 2 0 0 0 2 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGACCATAAG............................................................................... 15 1 9 0.11 1 0 0 0 0 0 1 0 0
.....TGAATAGTCAGAGCGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 17 2 9 0.11 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCCTAGACCGC............................... 15 1 10 0.10 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCAGGCTATGTCAT..................... 18 3 20 0.10 2 0 0 0 0 0 0 0 2
..................................................................................................................................................................................................................................................................................CGAGAGGTGCGAGAA.................................................................................................................................................................................................................. 15 0 16 0.06 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCTCGTTTTGTCATG.................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTGAATGATCC. 15 2 20 0.05 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................ATAAAACTATAAGTCA.................................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................ACAGGTCATTAAACA................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................................CCGGCGAGCGGCGATGAT.................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCGACTGTAAGCTACAC......................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:3267605-3268103 - dsi_8770 GAGATACTTATC-----TATCTCGCAGATACTTCAC------------GCTGCTACTTC--GCAAC----------------CAGGTA--GTGT------------------------------TGAAGGAAGCTGTGA--------------------CGCTCAAAAGAGAGA---------TTTTTTCGCAGTGTTGATTAAT--------TATGCATTCG-----CTA-----------GGAGGAGCT----------GCCACGCCCACCGCC-------GCCCAAGCT--TCC----------------------------------------AGCCCA--CGC---------TC-------GA-----------------TCGG----C---TCCAGCCATATCAGTTATT-------------CCGTTTATCTC---GT-----CACCGCACTTGAAA-TACA--ATTTGTTGT---------ATTCTGTATTCT--TTTTGTGTGTTTT--C----------TTCTCTCTCTG---CC-----GCTC---------------TC------------------------CAC-GCTCT--TCTTGTT--CAGTAATTTGTATTCTGATATTC-------------------------A---------------------GTGTTAATGTAGTATATT--------------------------------------TTTTTCTATA---TTTT-----CTTTACTTGTT-------------------TTTTGCCTATTTTGCGCGCTTTTTTGCTTTTTT-------------C----GCTGGCCGCT-C---GCCGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACGCAGCTCG-----------------CACTT-A--------------------------------------TT---AGTA
droSec2 scaffold_6:3444971-3445464 - GAGATACTTATC-----TATCTCGCAGATACTTCACTAGAAGCT-------------TCACGCAAC----------------CTGGTA--GTGT------------------------------TGAAGGAAGCTGTGA--------------------AGCTCAGAAGAGAGA----------TTTTT--CGGTGTTGATTAAT--------TATGCATTCG-----CTA-----------GGAGGAGCT----------GCCACGCCCACCGCC----------CAAGCT--TCC----------------------------------------AGCCCA--CGC---------TC-------GA-----------------TCGG----C---TCCAGCCATATCAGTTATT-------------CCGTTTATCTC---GT-----CACCGCACTTGAAA-TACA--ATTTGTTGT---------ATTCTGTATTCT--TTTTGTGTGTTTT--C----------TTCTCTCTCTA---CC-----GCTC---------------TC------------------------CAC-GCTCT--TCTTGTT--CAGTAATTTGTATTCTGATATTC-------------------------A---------------------GTGTTAATGTAGTATATT--------------------------------------TTTTTCTATA---TTTT-----CTTTACTTGTT-------------------TTTTGCCTATTTTGCGCGCTTTTTTGCTTTTTT-------------C----GCTGGCCGCT-C---GCCGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACACAGTTCG-----------------CACTT-A--------------------------------------TT---TGTA
dm3 chr3R:3349423-3349942 - GAGATACTTATC-----TATCTCGCAGATACTTCACTAGAAACT-------------TCACGCAAC----------------CAGGTA--GTGT------------------------------TTAAGGAAGCTGTGATTTTATGCATG------CTACGTTTAAAAGAGAGA--T-----TTTTTTTCGCAGTGTTGATTAGT--------TATGCATTCG-----CTA-----------GGAGGAACT----------GCCACGCCCACTGGC----------CAAGCT--TCCA-----------------------------G-CC---GACTGCCCA--CGC---------TC-------GATGA--------------TCGG----A---TCCAGTCATATCAGTTATT-------------CCGTTTATCTC---GT-----CACCGTACTTGAAA-TACACAATTTGTTGT---------ATTCTGTCTTCTTTTTTTGTGTGTT-T--C----------TTCTCTCTCTA---CC-----GCTC---------------TC------------------------CAC-GCTCT--TCTTGTT--CAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATATT-------------------------------------TTTTTTCTATAATATTTT-----CTTTACTTGTT--------------------TTTGCCTATTTTGTGGGCTCTTT--------T-------------C----GCTGGCCGCT-C---GCCGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACGCAGCTCG-----------------CGCCT-A--------------------------------------TT---AGTA
droEre2 scaffold_4770:3609506-3609981 - GAGATGCTTATC-----TATCTCGCAGATACTCCAGCAGACCCT-------------TTA-GATAC----------------CCGGTT--G-GT------------------------------TGAAAGCAGCTCTGGCTTTCTGCACT------CCGGACTCGAAAGTGCCC----------T--TT-----TGTCGA--GCT--------TATGCATTCG-----CTA-----------GGAGGTG-T----------GCCACGCCCACCGCC-------CA-CCGCCC--ACCA-----------------------------T-CC---GACAGCCCA--CGC---------TC-------AATGA--------------TCAG----C---TTGAGCTATATCAGTTTTT-------------GCGTTTATCTC---AG-----CACCGCACTTGAAA-TAC--------TTGT----------------ATTCT--TTTTGTGTGCCTT--------------TATCGCTCTG---CC-----GCTC---------------CC------------------------CAC-GCTCT--TCTCGTT--CGGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATAT---------------------------------------TTTTTCTATAATAT-TT-----CTTCGGTTCTT--------------------TTCGCCTATTTGGCGGGTT--------------------------CG--CGCTG-----------TCCGCTGGAATTCGATGTGGA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACGCAGCTCG-----------------CGCCT-A--------------------------------------TA---AGTA
droYak3 3R:6967571-6968067 + GAGATACTTATC-----TACCTCGCAGATACTCCACCAGG-GTT-------------TCA-GATAC----------------CCGGTT--GGGT------------------------------TGAAAGAGGCTGTGGTTTTCTGCACT------CTGGGCTCAAAACAGCC----------TCTTCTCGCATTGTTGATTAAT--------TATGCATTCT-----CTA-----------GGAGCTACT----------GCCACGCCCACCGCC----------CAAGCC--TCCA-----------------------------C-CC---GGCAGCCCA--CGC---------TC-------GATGA--------------TCGG----A---TCCAGCTATATCAGTTATT-------------CCGTTTATCTC---GG-----TACCGCACTTGAAA-TACA--ATTTGTTGT----------------GTTCT--TTTTGTGTGTTTT--A----------ATCTCTCTCTG---CC-----GCTC---------------CC------------------------CAC-GCTCT--TCTTGTT--CAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATATT-------------------------------------TTTTTTCTATAATATTTT-----CTCCGCTTGTT--------------------TTCGCCTATTTTGCGGGCTTTTT----------------------C----GCTG-----------GCCGCTGGAATTCGTTGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGGTGGCGCGATACAGTACGTTGCTCG-----------------TGCTC-A--------------------------------------TT---AGTA
droEug1 scf7180000409760:250716-251241 - GAGATACATATC-----CATCTTGAAGATACATAACCAGGGGAT-------------TCT-GATAC----------------TCGATTACG-GTTAAGCAATTTAGT--ATT-----------------------------TTAATAACT------CT-TATT-TAA--AGGGA--TTAGGTATTTTTTTGCAGTGCTTATTAAT--------TATGCATTCT----GCTA-----------GGAGGTGTT----------GCCACTCCCCCCGCC----------CAAGTT--TCCA-----------------------------G-CC---GACAGCCCACACGC---------TC-------CATGA--------------TCGG----C---TGCAGCTATATCAGTTATT-------------CCCTTTATCTC---GG-----GTCCGCACTTGAAA-TCCA--TTTTGTTGT----------------ATTCT--TTTTGTATAAATTTCA----------T--TCTCTCCA---CC-----GCTC---------------TC------------------------TGC-GCTCC--TCTTTTT-TGAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATATT-------------------------------------TTTTTTCTATAACCT--T-----TTTTACTTGTT-------------------TTTCGCCTATTTTGCGCGCTT-TT----------------------T----GCCGGACGCTCC---GCCGCTGGAATCCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCTGTTCGGCGCTGGCGCGATACAGTACGCAGCTCG-----------------TGGCC-ATA--------------------ATTATATATACA----TA---TATA
droBia1 scf7180000302155:1248505-1248978 + GGGGTGCTTTTG-----TATCTCGAAGATACTACGTCACGAGAT-------------TCA-GGTACTTATCATCTTAAATAAC---------------------------TTC----G-T-------------------------TCAGTCCGGCT-------TGAA---------CTATGTTCTTTTTCGCAGTGCTCATTAAT--------TATGCATTCG-----CTA-----------GGAGGTGTT----------GCCACGCCCCGCGCC----------CAAGT---TCCA-----------------------------C-CC---GACAGCCCA--CGC---------TC-------GATGA--------------TCGG----T---GGCGGCTATATCAGTTATT-------------CTGTTTATCTC---GG-----CT-CGCACTTGAAA-TACC--ATTTTTTGT----------------ATTC-------------TTT--G----------TTCTCTCTCCA---GC-----GCTC---------------TC------------------------GAC-GCTCT--TCTTCTC--GAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATAT---------------------------------------TTTGTCTATAAT---TT-----TTTCACTTGTT--------------------TTCGCCTATTTTGCGCGCTT-TT----------------------T----GCTGGAAGCCCC---GCCGCTGGAGTCCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGCGCTGGCGCGATACAGTCCGCAGCTCG-----------------TGGCC-A---------------------------------------------CA
droTak1 scf7180000415875:522995-523485 - AAGATACTTTTC-----TATCTCGAAGATACCCAACCAAGAGAT-------------TTA-AATAA----------------TTGGTC--A-------------AGT---TTT----G-T----TAA---------------------ATCGGGCT-------ATAA--AGAGA--TT----CGTTTTTTGCAGTGTTGATTAAT--------TATGCATTCG-----CTA-----------GGAGGTGTT----------GCCACGCCCCCCGCC----------CAAGTT--TCCA-----------------------------C-CC---GACAGCCCA--CGC---------CC-------GATGA--------------TCGG----T---TGTTGCTATATCAGTTATT-------------CTGTTTATCTC---GG-----CTCCGCACTTGAAA-TTCA--ATTTGTTGT----------------ATTCT--TTTCGTATATTTT--A----------TTCTCTCTCTA---CC-----GCTC---------------TC------------------------GAC-ACTCT--TCTTTTT-TGAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATAT---------------------------------------TTTTTCTATAACTTTTT-----TTTGCCTTGTT--------------------TTCGCCTATTTTGCGCGCTT-TT----------------------T----GCTGGACGCTCC---GCCGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTTGGCGCTGGCGCGATACAGTACGCAGCTTG-----------------TGGCC-ATA------------------------------------TC---TGTG
droEle1 scf7180000491104:1001804-1002207 + TGGATACTTGTC-----AATTTTGAAGATACTTAACCAGGAGA--------------------------------------------------------------------------------------------------------------------------------------------ATTTTGTGCAGTGTTTATTAAT--------TATGCATTCG-----T--------------------------------------------------------------T--TCCA-----------------------------C-CC---GACGGCCCA--CGC---------TC-------GATGA--------------TCGC----T---TGTGGCTATATCAGTTATT-------------CTGTTTATCTC---GG-----CTCCGCACTTGAAA-CACA--ATTT--TGT----------------GTTCT--TTTTGTATTTTTT--A----------TT--CTCTCTG---CG-----GCTC---------------TC------------------------TAC-GCTCT--TCTTTTT-TGAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATTT---------------------------------------TTTTTCTATAATATTTT-----TTTCACTTGTT--------------------TTTGCCTATTTTGCGGGCTTTTT----------------------T----GCTGGACGCTCC---GCCGCTGGAATTCACTGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTTGGCGCTGGCGCGATTCAGTACGCAGCTCG-----------------TGGAT-A---------------------------------------------TA
droRho1 scf7180000773324:7143-7594 + TAGATACTTGTC-----TATCTCGAAGAC------------GAT-------------TGA-GGTACT------CTA--------------A-------------AGTTCATTTCGCTGTTTGATAA---------------------------------------AA--AGAGA--TT----GATTTTTTGCAGTGTTTATAAATAAGGTAATAATGCAAT-G-----CT--------------------------------------------------------AAAGTT--TCCA-----------------------------C-CC---AACGGCCCA--CGC---------TC-------GATGA--------------TCAG----T---TGTTGCTATATCAGTTATT-------------CAGTTTATCTC---GA-----CTCCGCACTTGAAA-TACA--TT--GTTGT----------------GTTCT--TTTTGTGTATTTT--A----------TTCTCTCTCTG---CG-----GCTC---------------TC------------------------TAC-GCTCT--TCTTTTT--TAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTATTAT-----------------------------------------TTTTTCTATAATAATTT-----TTTCACTTGCT--------------------TTCGCCTATTTTGCGGGCTTTTT----------------------T----GCTGGACGCTCC---GCCGCTGGAATTCGCTGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGCTTGGCGCTGACGCGATACAGTACGCAGCCCG-----------------TGGCC-AT-------------------------------------------ATA
droFic1 scf7180000454063:284254-284718 + AAATT-C--ATCTTTGGTATCTCTAAGATACTAACCCTGG-ATT-------------TTG-GTTAC--ATGA----------TTATA----------------TATT--ATTT----GTTT---------------------TC----ATAAGACTGTAG---------A---A--TTA---AATTTTTGACAGTGTTGTTTAAT--------TATGCATTCG-----C---------------------------------------------------------CAAGTT--TTCT-----------------------------C-CC---GACGACCCA--CGC---------TC-------GATGA--------------TCGG----T---T-TTGCTATATCAGTTACT---------GTGGCTGTTTATCTC---GA-----CTCCGCACTTGAAA-TACA--AAT--TCGT----------------ATTCT--TTTTGTATATTTT--A----------TTCTCTCCCTAACGCT-----GCTC---------------TC------------------------TAC-GCTCT--TCTTTTT--GAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTATTGTAGTATATT--------------------------------------TTTTTCTATAATT---------TTTCACTTTTT--------------------TTCGCCTATTT-GTTGGCTTGTT----------------------TG--CGCCGGACGCTCC---GCAGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGCACTGGCGCGATACAGTACGCAGCTCG-----------------TGGGC-A---------------------------------------------TA
droKik1 scf7180000302706:116211-116646 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCGCAGTGTCGATTAAT--------TATGCATTCG-----CCTGAGGCGCTTCGGGAGGTGTTTCTGGCCCCTGAAATCCCCCCCG-------------GACC---------------CCTCGGAGCCTCTC-------GCTGGGTGACAGCCCA--CGC---------TC-------GATGA--------------TCGC----T---GGCTGCTATATCAGTAACTGTTGTTGCTGTTGCTGTTTATCTC---CG-----CACCGCACTTGAAA-TACA--ATTTTTCGT-----------------TTCT--TCTCGCTTACTTC--ATTCTCTCTG-----CTCTCTC---CG-----GCTC---------------TC------------------------TTC-GTTCT--TCTTTTTCGGCTTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTATTATAT---------------------------------------TTTTTCTATAATTTTTTGTT--GTTCACTTGTT--------------------TTTGCCTATTTGGCG-------------------------------------------CTCT---GCCGCTGGAATCCGATGTGAA----AAAGTCTGTTTTTAATTTCAGTTTCAGTTCGGCGCTGGCCCGCTACAGTACGCAGCTCG-----------------TGAAC-CTA------------------------------------T--------
droAna3 scaffold_13340:3121501-3121986 - GCGAAA------------------AAGATACTT---------------------------------------------------GGA----------------TAGT--ATTT----GGCTGGCGGA-----------------------------------------GAGAGACCTT----TGTTTTGTGCAGTGTTGATTAAT--------TATGCATTCG-----CCAAAGGCGCGTCTAGAGGTGTT-------------ACACCCTCCGCC----------CCAGTAGCCCCACTCGCCCCACT------CTCTCTCCAAAAGCCG---GACAGCCCA--CGC---------TC-------GAT-----------------CGG----CAAGTCGTGTTGT------------TGTTGATGTTGCCTTTTATCTC---TG-----CTCCGCACTTGAAA-TATA--TT---TTTT----------------ATTCT--TTTTGTTTATTTTTTATTCT--CTC-------CTCTC---TC-----ACTC---------------TT------------------------GAT-ATTTT--TTTTG---TGTTTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATGCT------------------------------------TTTTTTTCTATAATTT-TT-----TTTCGCTTGTT--------------------TTCGCCTATTTTGCGAGCTCGTT----------------------T----GCCGGACGCTCCGCGGCTGCTGGAATTCGACG-GAA----AAAGTATGTTTTTAATTTCAGTTTCAGTTTGGCGCTGGAGCGATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------CGTA
droBip1 scf7180000396712:1229350-1229856 + AAGATACTTAGA-----TA-----------CTG----------TTTACACTGCGAA-AAA-GATAC----------------TTGGC----------------TAGT--ATTT----GCTTGGCGGA-----------------------------------------GAGGGATCTC----CGTTTTGTGCAGTGTTGATTAAT--------TATGCATTCG-----CCAAAGGCGCGTCAAGAGGTGTT-------------ACACCCTCCGCC----------CCAGTGCCCCCA---------CT------CTCTCCCCA-AAGCCG---GACAGCCCA--CGC---------TC-------GAT-----------------CGG----CAACTCGTGTTGT------------TGTTGATGTTGCCTTTTATCTC---TG-----CTCCGCACTTGAAA-TATA--TT---TTTT----------------ATTCT--TTTTGTTGATTTTTTATTCT--CTC-------CTCTC---TC-----ACTC---------------TT------------------------ATT-ATTTT--TTTTG---TGTTTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATGCT------------------------------------TTTTTTTCTATAATTT-TT-----TTTCGCTTGTT--------------------TTCGCCTATTTTGCGAGCTCGTT----------------------T----GCTGGACGCTCCGCGGCTGCTGGAATTCGACG-GAA----AAAGTATGTTTTTAATTTCAGTTTCAGTTCGGCGCTGGAGCGATACAGTACGCAGCTCG-----------------TGGATCGTA------------------------------------GA---TACA
droPer2 scaffold_6:2060970-2061305 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------CTGTTTATCTCTCTGG-----CTCCGCACTTGAAAATACA--ATATCT-G--------------------CT--TTCTGCC-ATACATATTCCT--CTC-------CTCTC---TTTCTCCGCTCGCTCACCCCTGTCTTTCTCCACTCTTTCTTCTGTG-TGTGTC-T-GTTTT--TTTT--T-TGTTTAATTTGTATTCCGATATTT-----------------------------------------------GTGTTAATGTAGTATATT---------------------------------------TT---TAAA-TTTTTTTTT--TGCCACTTGTT--------------------TTCGCCTATTCTGCCTGCTGGCTCGCT------------------CT--CGTCGGCCG-------CCGGCTGGAATTCCATATGAA----AAAGTTTGTTTTTAATTTCAGTTTCAGTTTGCCGCTGGAACGCAACGGAACGCATTTTG-----------------GAGATCGTG-------------------------------------G---GACA
droWil2 scf2_1100000004902:7237667-7238146 - GCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAACATA---T----CGTTTGGTGCACTATTGATTAAT--------TATGCAGTAG-----CTCTA---------GGCGCGCCT----------AGAATACCCACC-------------CCACTC--AGCA-----------------------------C-TC---GAGAGCCTA--CGCATTCTCCACTA-------GATGA--------------TCGG----C---TGTGACTCTCTGGA-----------------ACGTTTAATCTC---TG-----CGCCGCATATGAAA-CGCAGCATTTTT-GC-----T----------TTTGT--TTTGCTATAAA-------------------------------------CTT---------------TTT------------TCATT----------CTTTT--TGTT-TT-TGTTTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATATTTCTCTCTGTTTTTTTCTTTTTTTCGTTTTTGTTTTCTTTTTTTTTATAATTT--T-----TGCCACTTGTT-----------------TATTTCGCCTGTTCTGTTCGGTT-------------------------CGGTTGTGTTCTGCT-T---GCCAATGGAATTCAATATGAG-TA-AAAG----TTTATAATTTCAGTTTCTGTTTGGAGCTGGCACAATACAGTTGGTTGGTCCGATCGTTTACAGATCAGCAGCA-A----------------------GTTCAATACACA--TATT---TGC-
droVir3 scaffold_12855:6248072-6248508 - G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATTAAT--------TATGCAGTCG-----CCTTAGGCGCGTCTACAAGTA------------------GCCTCAGCCATAGGCA---GCGGGCGCCCCA-----------------------------C-TC---GCCCGCCCA--CGA---------TC-------CC-----------------ACAG----C---TGC----GTATCTG-----------------------TATCTG---TGCCGGTCTGCGCACTTGAAA-TACA--AATT--TGT---AGTTGTATTTTGATATTT--TTTTGTGCCGCGT--T--------TTTTTTT---------------------------------------------------TGTGTTGTGTT-TTCTTTT--TGTT--T-TGCTTAGTTTTTATTCTGATATTT--GCTT--TATTCT---------------------------------------ATATGGTATATACT----------------------------------TATATACATATA------TGTTTATTTGCCTCGCTCCCCAGCCCGCCACCCACGTTTCGCTTGTTTTGTT------------------------------C----GCCTGAAGCGTC---GACAACTGAACTGAATATGGA----ATAAAAAAGTTTTAATTTCAGTTTCAGTTTAGCGCTGGCGCGTTACAGTCCAAG-C--------------GATCGGTGGAA-ATA--------------------CTTAAATAAC------TTAATACTG
droMoj3 scaffold_6540:6591132-6591621 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATTAAT--------TATACAGCCGCTTTGCTA-----------ACAAGTGGC------------------------C----------CCAGC---CTCA-----------------------------C-TC---GCCCGCCCA--CGCCTTTTACAGCAACCGCTCCAGCTTCAGCTCTCAGCTCTCAGCTCCC---AGC--TCCCAGCTGTGCCT-------------CTGTGTATCTG-------------TGCACTTGAAA-AGA---ATATATAATTTTTGTTGTGTTTT------------CG-CTATTTTTTATTG---------------------------------------------------------------TGTGCTGTATT-TTTTCTA--TGTT--T-TGTTCTGTTTTTATTCAGTTGTTT--GCTT--TATTCAACTTGGTATATAGTACTACTTACATAT------GTATGTATGTAC-ATATA-------------------------------------TGC-----ATGCGAGTGT-----GTGCCTGTGCT--------------------TATATCTCTTTGACGAGCTCTAC--------TCGCCTGTTTTGTTC-----------GCGTC---AACAACTGAACTCAATATGGAATA-AAAAATTATTGTTAATTTCAGTTTCAGTTCGGTGCTGGCGCGCAACAGTCCAAG-C--------------GATCGGTGAAA-ACGAAATTATATTCATAAACACAAACGCACATACATATATA---AATA
droGri2 scaffold_14906:7827011-7827306 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCACTTGAAA-AAAA--ACTTTTTGT------------------TGT--TGTTG---------------------GAATCTCTTTGTTGCT-----ATTT---------------TTT------------TCATGCCGCTTTTT-GTTTTTGTATT--T-TGTTGATATTTTATTATGTTATTCTCGCTTTTTACTCT---------------------AC-AATGTATATGTGTAAATATATATGATT-------------------------------------TTTTTTC-------TTTC-----TTCCACTTGT---------------------TTCGCTTGTTTTGTGCGC----------------------------------CAGACTCGTC---GACAACTGAACTCAATACGAA-TATCAAAAAAGTTTTTAATTTCAGTTTCGGTTTAGTGCTGGCGCGTTAAAGTCTACGGATCG----------------GTGAAA-AGG------------------------------------AA---GGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAGATACTTATC-----TATCTCGCAGATACTTCAC------------GCTGCTACTTC--GCAAC----------------CAGGTA--GTGT------------------------------TGAAGGAAGCTGTGA--------------------CGCTCAAAAGAGAGA---------TTTTTTCGCAGTGTTGATTAAT--------TATGCATTCG-----CTA-----------GGAGGAGCT----------GCCACGCCCACCGCC-------GCCCAAGCT--TCC----------------------------------------AGCCCA--CGC---------TC-------GA-----------------TCGG----C---TCCAGCCATATCAGTTATT-------------CCGTTTATCTC---GT-----CACCGCACTTGAAA-TACA--ATTTGTTGT---------ATTCTGTATTCT--TTTTGTGTGTTTT--C----------TTCTCTCTCTG---CC-----GCTC---------------TC------------------------CAC-GCTCT--TCTTGTT--CAGTAATTTGTATTCTGATATTC-------------------------A---------------------GTGTTAATGTAGTATATT--------------------------------------TTTTTCTATA---TTTT-----CTTTACTTGTT-------------------TTTTGCCTATTTTGCGCGCTTTTTTGCTTTTTT-------------C----GCTGGCCGCT-C---GCCGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACGCAGCTCG-----------------CACTT-A--------------------------------------TT---AGTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGCTGGCGCGATACA...................................................................................2512.00202000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTT-------------------TTTTGCCTATT..................................................................................................................................................................................................................1812.00200002000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGTTCGGAGCTGGCGCGATACAGTA................................................................................2911.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATACAGTACGCAGCTCG-----------------CACTT-................................................2611.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------CACT..................................................2211.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCGGAGCTGGCGCG........................................................................................1811.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTTCGGTTCGGAGC...............................................................................................1911.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTCG-----------------CACTT-A--------------------------------------TT---AG..1811.00100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGCTGGCGCGATACAGTACG..............................................................................2411.00101000000000000000
.........................................................................................................................................GA--------------------CGCTCAAAAGAGAGA---------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACAGTACGCAGCTC........................................................................1811.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACAGTACGCAGCTCG-----------------CACT..................................................2411.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTCGGAGCTGGCGC.........................................................................................1811.00101000000000000000
droSec2
GAGATACTTATC-----TATCTCGCAGATACTTCACTAGAAGCT-------------TCACGCAAC----------------CTGGTA--GTGT------------------------------TGAAGGAAGCTGTGA--------------------AGCTCAGAAGAGAGA----------TTTTT--CGGTGTTGATTAAT--------TATGCATTCG-----CTA-----------GGAGGAGCT----------GCCACGCCCACCGCC----------CAAGCT--TCC----------------------------------------AGCCCA--CGC---------TC-------GA-----------------TCGG----C---TCCAGCCATATCAGTTATT-------------CCGTTTATCTC---GT-----CACCGCACTTGAAA-TACA--ATTTGTTGT---------ATTCTGTATTCT--TTTTGTGTGTTTT--C----------TTCTCTCTCTA---CC-----GCTC---------------TC------------------------CAC-GCTCT--TCTTGTT--CAGTAATTTGTATTCTGATATTC-------------------------A---------------------GTGTTAATGTAGTATATT--------------------------------------TTTTTCTATA---TTTT-----CTTTACTTGTT-------------------TTTTGCCTATTTTGCGCGCTTTTTTGCTTTTTT-------------C----GCTGGCCGCT-C---GCCGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACACAGTTCG-----------------CACTT-A--------------------------------------TT---TGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTACACAGTTCG-----------------CACT..................................................1912.0020011
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTCGGAGCTGGCGCGAT......................................................................................2112.0020110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGGCGCGAT......................................................................................2511.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGCTGGCGC.........................................................................................1911.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTTCAGTTTCGGTTCGGA.................................................................................................2411.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGCTGGCGCGATACAGTACACAGT..........................................................................2711.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTCGGAGCTGGCGCGATACAG..................................................................................2511.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGTTCG-----------------CACTT-A--------------------------------------TT---T...1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGCTGGCGCGAT......................................................................................2211.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGCTGGCGCGATACAGTA................................................................................2811.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGGC...........................................................................................2011.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATACAGTACACAGTTCG-----------------......................................................2111.0010010
dm3
GAGATACTTATC-----TATCTCGCAGATACTTCACTAGAAACT-------------TCACGCAAC----------------CAGGTA--GTGT------------------------------TTAAGGAAGCTGTGATTTTATGCATG------CTACGTTTAAAAGAGAGA--T-----TTTTTTTCGCAGTGTTGATTAGT--------TATGCATTCG-----CTA-----------GGAGGAACT----------GCCACGCCCACTGGC----------CAAGCT--TCCA-----------------------------G-CC---GACTGCCCA--CGC---------TC-------GATGA--------------TCGG----A---TCCAGTCATATCAGTTATT-------------CCGTTTATCTC---GT-----CACCGTACTTGAAA-TACACAATTTGTTGT---------ATTCTGTCTTCTTTTTTTGTGTGTT-T--C----------TTCTCTCTCTA---CC-----GCTC---------------TC------------------------CAC-GCTCT--TCTTGTT--CAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATATT-------------------------------------TTTTTTCTATAATATTTT-----CTTTACTTGTT--------------------TTTGCCTATTTTGTGGGCTCTTT--------T-------------C----GCTGGCCGCT-C---GCCGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACGCAGCTCG-----------------CGCCT-A--------------------------------------TT---AGTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGGCG..........................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000200000000000001100000000000000200011000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGGCGCG........................................................................................2319.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000020200010000000000000110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGG............................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000010000000000000000000000000000000000000010100000000000000000000001000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGGCGCGA.......................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100100000000000000000000000000000001000000000000000000000000000000000000000000000200100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGGCGC.........................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000030100010000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTCG-----------------CGCCT-A--------------------------------------TT---AG..1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000000000000000100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGCGCGATACAGTA................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGGC...........................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000001000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGGCGCGATACAG..................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTCGGAGCTGGCG..........................................................................................1713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGCTGGCGC.........................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------CGCCT-................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGGAGCTGGCGCGATACAG..................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCAGCTCG-----------------CGCCT-A--------------------------------------.........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTACGCAGCTCG-----------------CGCC..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTACGCAGCTCG-----------------CG....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCAGCTCG-----------------CGCCT-A--------------------------------------TT---AG..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACAGTACGCAGCTCG-----------------CG....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGTTCGGAGCTGGC...........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................TTGATTAGT--------TATGCATTCG-----CTA-----------GGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATACAGTACGCAGC..........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCGGAGCTGGCGCGATACAG..................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTTCGGTTCGGAGCTGGC...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTCGGTTCGGAGCTG.............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACAGTACGCAGCT.........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ACT-------------TCACGCAAC----------------CAGGTA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGAA----AAAGTGTGTTTT......................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCGGAGCTGGCGCG........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGCTGGCGCGATACAG..................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGCAGCTCG-----------------CGCCT-A--------------------------------------T........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCGCGATACAGTAC...............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACAGTACGCAGCTCG-----------------......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTCG-----------------CGCCT-A--------------------------------------TT---AGT.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTGGCGCGATACATC.................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGGCGCGATACAGTA................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AGCT--TCCA-----------------------------G-CC---GACTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTACGCAGCTCG-----------------CGCCT-A--------------------------------------TT---AG..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTCGGTTCGGAGCTGGC...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATGTGAA----AAAGTG............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCGGAGCTGGCGCGA.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..............................................................................................................................................................ACGTTTAAAAGAGAGA--T-----TTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTCGGAGCTGGCGCGAT......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGGAGCTGGCGCGAT......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCG-----------------CGCCT-A--------------------------------------TT---AGT.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATACAGTACGCAGCT.........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGTTCGGAGCTG.............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGCTGGCGCGATACAGTA................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTACTTGAAA-TACACAATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAATGTAGTATATT-------------------------------------TT................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTCGGTTCGGAGCTGG............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAATTCGATGTGAA----AAAGTGTGT.........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGCTGGCGCGA.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGATGTGAA----AAAGTGTGTTTTT.....................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGCTGGCGCGATA.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-------------------------------------TTTTTTCTATAATAC...................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GAGATGCTTATC-----TATCTCGCAGATACTCCAGCAGACCCT-------------TTA-GATAC----------------CCGGTT--G-GT------------------------------TGAAAGCAGCTCTGGCTTTCTGCACT------CCGGACTCGAAAGTGCCC----------T--TT-----TGTCGA--GCT--------TATGCATTCG-----CTA-----------GGAGGTG-T----------GCCACGCCCACCGCC-------CA-CCGCCC--ACCA-----------------------------T-CC---GACAGCCCA--CGC---------TC-------AATGA--------------TCAG----C---TTGAGCTATATCAGTTTTT-------------GCGTTTATCTC---AG-----CACCGCACTTGAAA-TAC--------TTGT----------------ATTCT--TTTTGTGTGCCTT--------------TATCGCTCTG---CC-----GCTC---------------CC------------------------CAC-GCTCT--TCTCGTT--CGGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATAT---------------------------------------TTTTTCTATAATAT-TT-----CTTCGGTTCTT--------------------TTCGCCTATTTGGCGGGTT--------------------------CG--CGCTG-----------TCCGCTGGAATTCGATGTGGA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGCTGGCGCGATACAGTACGCAGCTCG-----------------CGCCT-A--------------------------------------TA---AGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------CGC...................................................2114.0040201100
..................................................................................................................................................................................................................................................................................................................................................................................A--------------TCAG----C---TTGAGCTATATCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------TATCGCTCTG---CC-----GCTC---------------CC------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCGATACAGTACGCAG...........................................................................2011.0010000010
......................................GACCCT-------------TTA-GATAC----------------CCGGTT--G-GT------------------------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTACGCAGCTCG-----------------CGCCT-................................................2111.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------C.....................................................1911.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGGTTCGGAGCTGGCGC.........................................................................................2111.0010100000
droYak3
GAGATACTTATC-----TACCTCGCAGATACTCCACCAGG-GTT-------------TCA-GATAC----------------CCGGTT--GGGT------------------------------TGAAAGAGGCTGTGGTTTTCTGCACT------CTGGGCTCAAAACAGCC----------TCTTCTCGCATTGTTGATTAAT--------TATGCATTCT-----CTA-----------GGAGCTACT----------GCCACGCCCACCGCC----------CAAGCC--TCCA-----------------------------C-CC---GGCAGCCCA--CGC---------TC-------GATGA--------------TCGG----A---TCCAGCTATATCAGTTATT-------------CCGTTTATCTC---GG-----TACCGCACTTGAAA-TACA--ATTTGTTGT----------------GTTCT--TTTTGTGTGTTTT--A----------ATCTCTCTCTG---CC-----GCTC---------------CC------------------------CAC-GCTCT--TCTTGTT--CAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATATT-------------------------------------TTTTTTCTATAATATTTT-----CTCCGCTTGTT--------------------TTCGCCTATTTTGCGGGCTTTTT----------------------C----GCTG-----------GCCGCTGGAATTCGTTGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGAGGTGGCGCGATACAGTACGTTGCTCG-----------------TGCTC-A--------------------------------------TT---AGTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGTTGCTCG-----------------T.....................................................1921.50311010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGTTGCTCG-----------------TGCTC-A--------------------------------------TT---A...2721.00202000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGTTGCTCG-----------------TGCT..................................................2221.00201000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGAGGTGGCGCGATAC....................................................................................2020.50101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACAGTACGTTGCTCG-----------------TGCT..................................................2420.50101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGGTGGCGC.........................................................................................1920.50101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTACGTTGCTCG-----------------TGCT..................................................2120.50101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGTGGCGCGATACAGTACGTTG...........................................................................2620.50101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTCGGAGGTGGCGCGATA.....................................................................................2320.50100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCG-----------------TGCTC-A--------------------------------------TT---AGT.1920.50100001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGAGGTGGCGCGATACAGTACGT.............................................................................2720.50100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCGGAGGTGGCGCGAT......................................................................................2020.50100000010000
droEug1
GAGATACATATC-----CATCTTGAAGATACATAACCAGGGGAT-------------TCT-GATAC----------------TCGATTACG-GTTAAGCAATTTAGT--ATT-----------------------------TTAATAACT------CT-TATT-TAA--AGGGA--TTAGGTATTTTTTTGCAGTGCTTATTAAT--------TATGCATTCT----GCTA-----------GGAGGTGTT----------GCCACTCCCCCCGCC----------CAAGTT--TCCA-----------------------------G-CC---GACAGCCCACACGC---------TC-------CATGA--------------TCGG----C---TGCAGCTATATCAGTTATT-------------CCCTTTATCTC---GG-----GTCCGCACTTGAAA-TCCA--TTTTGTTGT----------------ATTCT--TTTTGTATAAATTTCA----------T--TCTCTCCA---CC-----GCTC---------------TC------------------------TGC-GCTCC--TCTTTTT-TGAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATATT-------------------------------------TTTTTTCTATAACCT--T-----TTTTACTTGTT-------------------TTTCGCCTATTTTGCGCGCTT-TT----------------------T----GCCGGACGCTCC---GCCGCTGGAATCCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCTGTTCGGCGCTGGCGCGATACAGTACGCAGCTCG-----------------TGGCC-ATA--------------------ATTATATATACA----TA---TATASizeHit CountTotal NormTotal
No Reads
droBia1
GGGGTGCTTTTG-----TATCTCGAAGATACTACGTCACGAGAT-------------TCA-GGTACTTATCATCTTAAATAAC---------------------------TTC----G-T-------------------------TCAGTCCGGCT-------TGAA---------CTATGTTCTTTTTCGCAGTGCTCATTAAT--------TATGCATTCG-----CTA-----------GGAGGTGTT----------GCCACGCCCCGCGCC----------CAAGT---TCCA-----------------------------C-CC---GACAGCCCA--CGC---------TC-------GATGA--------------TCGG----T---GGCGGCTATATCAGTTATT-------------CTGTTTATCTC---GG-----CT-CGCACTTGAAA-TACC--ATTTTTTGT----------------ATTC-------------TTT--G----------TTCTCTCTCCA---GC-----GCTC---------------TC------------------------GAC-GCTCT--TCTTCTC--GAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATAT---------------------------------------TTTGTCTATAAT---TT-----TTTCACTTGTT--------------------TTCGCCTATTTTGCGCGCTT-TT----------------------T----GCTGGAAGCCCC---GCCGCTGGAGTCCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGCGCTGGCGCGATACAGTCCGCAGCTCG-----------------TGGCC-A---------------------------------------------CASizeHit CountTotal NormTotal
No Reads
droTak1
AAGATACTTTTC-----TATCTCGAAGATACCCAACCAAGAGAT-------------TTA-AATAA----------------TTGGTC--A-------------AGT---TTT----G-T----TAA---------------------ATCGGGCT-------ATAA--AGAGA--TT----CGTTTTTTGCAGTGTTGATTAAT--------TATGCATTCG-----CTA-----------GGAGGTGTT----------GCCACGCCCCCCGCC----------CAAGTT--TCCA-----------------------------C-CC---GACAGCCCA--CGC---------CC-------GATGA--------------TCGG----T---TGTTGCTATATCAGTTATT-------------CTGTTTATCTC---GG-----CTCCGCACTTGAAA-TTCA--ATTTGTTGT----------------ATTCT--TTTCGTATATTTT--A----------TTCTCTCTCTA---CC-----GCTC---------------TC------------------------GAC-ACTCT--TCTTTTT-TGAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATAT---------------------------------------TTTTTCTATAACTTTTT-----TTTGCCTTGTT--------------------TTCGCCTATTTTGCGCGCTT-TT----------------------T----GCTGGACGCTCC---GCCGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTTGGCGCTGGCGCGATACAGTACGCAGCTTG-----------------TGGCC-ATA------------------------------------TC---TGTGSizeHit CountTotal NormTotal
No Reads
droEle1
TGGATACTTGTC-----AATTTTGAAGATACTTAACCAGGAGA--------------------------------------------------------------------------------------------------------------------------------------------ATTTTGTGCAGTGTTTATTAAT--------TATGCATTCG-----T--------------------------------------------------------------T--TCCA-----------------------------C-CC---GACGGCCCA--CGC---------TC-------GATGA--------------TCGC----T---TGTGGCTATATCAGTTATT-------------CTGTTTATCTC---GG-----CTCCGCACTTGAAA-CACA--ATTT--TGT----------------GTTCT--TTTTGTATTTTTT--A----------TT--CTCTCTG---CG-----GCTC---------------TC------------------------TAC-GCTCT--TCTTTTT-TGAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATTT---------------------------------------TTTTTCTATAATATTTT-----TTTCACTTGTT--------------------TTTGCCTATTTTGCGGGCTTTTT----------------------T----GCTGGACGCTCC---GCCGCTGGAATTCACTGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTTGGCGCTGGCGCGATTCAGTACGCAGCTCG-----------------TGGAT-A---------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droRho1
TAGATACTTGTC-----TATCTCGAAGAC------------GAT-------------TGA-GGTACT------CTA--------------A-------------AGTTCATTTCGCTGTTTGATAA---------------------------------------AA--AGAGA--TT----GATTTTTTGCAGTGTTTATAAATAAGGTAATAATGCAAT-G-----CT--------------------------------------------------------AAAGTT--TCCA-----------------------------C-CC---AACGGCCCA--CGC---------TC-------GATGA--------------TCAG----T---TGTTGCTATATCAGTTATT-------------CAGTTTATCTC---GA-----CTCCGCACTTGAAA-TACA--TT--GTTGT----------------GTTCT--TTTTGTGTATTTT--A----------TTCTCTCTCTG---CG-----GCTC---------------TC------------------------TAC-GCTCT--TCTTTTT--TAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTATTAT-----------------------------------------TTTTTCTATAATAATTT-----TTTCACTTGCT--------------------TTCGCCTATTTTGCGGGCTTTTT----------------------T----GCTGGACGCTCC---GCCGCTGGAATTCGCTGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGCTTGGCGCTGACGCGATACAGTACGCAGCCCG-----------------TGGCC-AT-------------------------------------------ATASizeHit CountTotal NormTotal
No Reads
droFic1
AAATT-C--ATCTTTGGTATCTCTAAGATACTAACCCTGG-ATT-------------TTG-GTTAC--ATGA----------TTATA----------------TATT--ATTT----GTTT---------------------TC----ATAAGACTGTAG---------A---A--TTA---AATTTTTGACAGTGTTGTTTAAT--------TATGCATTCG-----C---------------------------------------------------------CAAGTT--TTCT-----------------------------C-CC---GACGACCCA--CGC---------TC-------GATGA--------------TCGG----T---T-TTGCTATATCAGTTACT---------GTGGCTGTTTATCTC---GA-----CTCCGCACTTGAAA-TACA--AAT--TCGT----------------ATTCT--TTTTGTATATTTT--A----------TTCTCTCCCTAACGCT-----GCTC---------------TC------------------------TAC-GCTCT--TCTTTTT--GAGTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTATTGTAGTATATT--------------------------------------TTTTTCTATAATT---------TTTCACTTTTT--------------------TTCGCCTATTT-GTTGGCTTGTT----------------------TG--CGCCGGACGCTCC---GCAGCTGGAATTCGATGTGAA----AAAGTGTGTTTTTAATTTCAGTTTCGGTTCGGCACTGGCGCGATACAGTACGCAGCTCG-----------------TGGGC-A---------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droKik1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCGCAGTGTCGATTAAT--------TATGCATTCG-----CCTGAGGCGCTTCGGGAGGTGTTTCTGGCCCCTGAAATCCCCCCCG-------------GACC---------------CCTCGGAGCCTCTC-------GCTGGGTGACAGCCCA--CGC---------TC-------GATGA--------------TCGC----T---GGCTGCTATATCAGTAACTGTTGTTGCTGTTGCTGTTTATCTC---CG-----CACCGCACTTGAAA-TACA--ATTTTTCGT-----------------TTCT--TCTCGCTTACTTC--ATTCTCTCTG-----CTCTCTC---CG-----GCTC---------------TC------------------------TTC-GTTCT--TCTTTTTCGGCTTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTATTATAT---------------------------------------TTTTTCTATAATTTTTTGTT--GTTCACTTGTT--------------------TTTGCCTATTTGGCG-------------------------------------------CTCT---GCCGCTGGAATCCGATGTGAA----AAAGTCTGTTTTTAATTTCAGTTTCAGTTCGGCGCTGGCCCGCTACAGTACGCAGCTCG-----------------TGAAC-CTA------------------------------------T--------SizeHit CountTotal NormTotal
No Reads
droAna3
GCGAAA------------------AAGATACTT---------------------------------------------------GGA----------------TAGT--ATTT----GGCTGGCGGA-----------------------------------------GAGAGACCTT----TGTTTTGTGCAGTGTTGATTAAT--------TATGCATTCG-----CCAAAGGCGCGTCTAGAGGTGTT-------------ACACCCTCCGCC----------CCAGTAGCCCCACTCGCCCCACT------CTCTCTCCAAAAGCCG---GACAGCCCA--CGC---------TC-------GAT-----------------CGG----CAAGTCGTGTTGT------------TGTTGATGTTGCCTTTTATCTC---TG-----CTCCGCACTTGAAA-TATA--TT---TTTT----------------ATTCT--TTTTGTTTATTTTTTATTCT--CTC-------CTCTC---TC-----ACTC---------------TT------------------------GAT-ATTTT--TTTTG---TGTTTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATGCT------------------------------------TTTTTTTCTATAATTT-TT-----TTTCGCTTGTT--------------------TTCGCCTATTTTGCGAGCTCGTT----------------------T----GCCGGACGCTCCGCGGCTGCTGGAATTCGACG-GAA----AAAGTATGTTTTTAATTTCAGTTTCAGTTTGGCGCTGGAGCGATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------CGTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------....2318.008100070
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------C...2416.006010050
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------C...2313.003000021
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------CGT.2613.003000030
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------....2212.002000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------T.....................................................1912.002100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------....2512.002000020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCAGCTCG-----------------TGGAT---------------------------------------------CGTA2112.002000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------C...2612.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTACGCAGCTCG-----------------TGGAT---------------------------------------------....1912.002010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGCAGCTCG-----------------TGGAT---------------------------------------------C...1912.002010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------CGT.2412.002000020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------C...2212.002000020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCAGCTCG-----------------TGGAT---------------------------------------------CGT.1911.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCGCTGGAGCGATACAGT.................................................................................2311.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------....2111.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------CGT.2311.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTACGCAGCTCG-----------------TGGA..................................................1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGTTTGGCGCTGGAGC.........................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACAGTACGCAGCTCG-----------------TG....................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------TG....................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGTTTGGCGCTGGAG..........................................................................................1911.001100000
...........................ATACTT---------------------------------------------------GGA----------------TAGT--ATTT----GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTACGCAGCTCG-----------------TG....................................................1911.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCTCG-----------------TGGAT---------------------------------------------CGTA1811.001000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------CGTA2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------....2011.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTACGCAGCTCG-----------------TGGAT---------------------------------------------CGT.2511.001000001
droBip1
AAGATACTTAGA-----TA-----------CTG----------TTTACACTGCGAA-AAA-GATAC----------------TTGGC----------------TAGT--ATTT----GCTTGGCGGA-----------------------------------------GAGGGATCTC----CGTTTTGTGCAGTGTTGATTAAT--------TATGCATTCG-----CCAAAGGCGCGTCAAGAGGTGTT-------------ACACCCTCCGCC----------CCAGTGCCCCCA---------CT------CTCTCCCCA-AAGCCG---GACAGCCCA--CGC---------TC-------GAT-----------------CGG----CAACTCGTGTTGT------------TGTTGATGTTGCCTTTTATCTC---TG-----CTCCGCACTTGAAA-TATA--TT---TTTT----------------ATTCT--TTTTGTTGATTTTTTATTCT--CTC-------CTCTC---TC-----ACTC---------------TT------------------------ATT-ATTTT--TTTTG---TGTTTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATGCT------------------------------------TTTTTTTCTATAATTT-TT-----TTTCGCTTGTT--------------------TTCGCCTATTTTGCGAGCTCGTT----------------------T----GCTGGACGCTCCGCGGCTGCTGGAATTCGACG-GAA----AAAGTATGTTTTTAATTTCAGTTTCAGTTCGGCGCTGGAGCGATACAGTACGCAGCTCG-----------------TGGATCGTA------------------------------------GA---TACASizeHit CountTotal NormTotal
No Reads
droPer2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------CTGTTTATCTCTCTGG-----CTCCGCACTTGAAAATACA--ATATCT-G--------------------CT--TTCTGCC-ATACATATTCCT--CTC-------CTCTC---TTTCTCCGCTCGCTCACCCCTGTCTTTCTCCACTCTTTCTTCTGTG-TGTGTC-T-GTTTT--TTTT--T-TGTTTAATTTGTATTCCGATATTT-----------------------------------------------GTGTTAATGTAGTATATT---------------------------------------TT---TAAA-TTTTTTTTT--TGCCACTTGTT--------------------TTCGCCTATTCTGCCTGCTGGCTCGCT------------------CT--CGTCGGCCG-------CCGGCTGGAATTCCATATGAA----AAAGTTTGTTTTTAATTTCAGTTTCAGTTTGCCGCTGGAACGCAACGGAACGCATTTTG-----------------GAGATCGTG-------------------------------------G---GACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATTTTG-----------------GAGATCGTG-------------------------------------G---GA..2211.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--TGCCACTTGTT--------------------TTCGCCT.....................................................................................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGAACGCATTTTG-----------------GA....................................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATTTTG-----------------GAGATCGT..............................................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACGCAACGGAACGCATTTT........................................................................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTATTCTGCCTGCTGGCTCGCT------------------CT--...........................................................................................................................................................................2711.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCATTTTG-----------------GAGATCGTG-------------------------------------G---....2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAACGCATTTTG-----------------GAGATCGTG-------------------------------------G---GA..2811.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATTTTG-----------------GAGATCGTG-------------------------------------........1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTG-----------------GAGATCGTG-------------------------------------G---GA..1811.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTG-----------------GAGATCGTG-------------------------------------G---GACA2211.001000001
droWil2
GCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAACATA---T----CGTTTGGTGCACTATTGATTAAT--------TATGCAGTAG-----CTCTA---------GGCGCGCCT----------AGAATACCCACC-------------CCACTC--AGCA-----------------------------C-TC---GAGAGCCTA--CGCATTCTCCACTA-------GATGA--------------TCGG----C---TGTGACTCTCTGGA-----------------ACGTTTAATCTC---TG-----CGCCGCATATGAAA-CGCAGCATTTTT-GC-----T----------TTTGT--TTTGCTATAAA-------------------------------------CTT---------------TTT------------TCATT----------CTTTT--TGTT-TT-TGTTTAATTTGTATTCTGATATTT-----------------------------------------------GTGTTAATGTAGTATATTTCTCTCTGTTTTTTTCTTTTTTTCGTTTTTGTTTTCTTTTTTTTTATAATTT--T-----TGCCACTTGTT-----------------TATTTCGCCTGTTCTGTTCGGTT-------------------------CGGTTGTGTTCTGCT-T---GCCAATGGAATTCAATATGAG-TA-AAAG----TTTATAATTTCAGTTTCTGTTTGGAGCTGGCACAATACAGTTGGTTGGTCCGATCGTTTACAGATCAGCAGCA-A----------------------GTTCAATACACA--TATT---TGC-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGTTGGTTGGTCC.......................................................................1814.00400040
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTTGGTTGGTCCGAT....................................................................2012.00200200
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTACAGATCAGCAGCA-A----------------------.........................2012.00200110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAATACAGTTGGTTG...........................................................................1911.00101000
.......................................................................................................................................................................................................................TGCAGTAG-----CTCTA---------GGCGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGTTGGTTGGTCCGATCGTTTACA............................................................2911.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTTGGAGCTGGCACAAT......................................................................................2111.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGTTGGTTGGTCCGATCGTT................................................................2511.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTACAGATCAGCAGCA-A----------------------GT.......................2211.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGTTGGTTGGTCCGATC...................................................................2211.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTGGTCCGATCGTTTACAG...........................................................2411.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCGATCGTTTACAG...........................................................1811.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGATCGTTTACAGATCAG......................................................2211.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAATTCAATATGAG-TA-..................................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................................................................................C-TC---GAGAGCCTA--CGCATTCTCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACAGTTGGTTGGTCCGATCGTT................................................................2611.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTAATCTC---TG-----CGCCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTTGGTTGGTCCGATC...................................................................2011.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGATCGTTTACAGA..........................................................1811.00110000
droVir3
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATTAAT--------TATGCAGTCG-----CCTTAGGCGCGTCTACAAGTA------------------GCCTCAGCCATAGGCA---GCGGGCGCCCCA-----------------------------C-TC---GCCCGCCCA--CGA---------TC-------CC-----------------ACAG----C---TGC----GTATCTG-----------------------TATCTG---TGCCGGTCTGCGCACTTGAAA-TACA--AATT--TGT---AGTTGTATTTTGATATTT--TTTTGTGCCGCGT--T--------TTTTTTT---------------------------------------------------TGTGTTGTGTT-TTCTTTT--TGTT--T-TGCTTAGTTTTTATTCTGATATTT--GCTT--TATTCT---------------------------------------ATATGGTATATACT----------------------------------TATATACATATA------TGTTTATTTGCCTCGCTCCCCAGCCCGCCACCCACGTTTCGCTTGTTTTGTT------------------------------C----GCCTGAAGCGTC---GACAACTGAACTGAATATGGA----ATAAAAAAGTTTTAATTTCAGTTTCAGTTTAGCGCTGGCGCGTTACAGTCCAAG-C--------------GATCGGTGGAA-ATA--------------------CTTAAATAAC------TTAATACTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGCGCTGGCGCGTTACA...................................................................................2114.004000000200000000002000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAG-C--------------GATCGGTGGA..................................................1812.002000000000000000001000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCCAAG-C--------------GATCGGTGGAA-A...............................................2212.002000000000000000000000000000000000000000000000000000000000000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAGCGCTGGCGCGTTACAGTCCA..............................................................................2712.002000000000000001000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-C--------------GATCGGTGGAA-ATA--------------------C........................1811.001000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GCCCA--CGA---------TC-------CC-----------------ACAG----C---TGC----GTATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTACAGTCCAAG-C--------------GATCGGTGGAA-A...............................................2811.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCAGTTTAGCGCTGGC...........................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCCAAG-C--------------GATCGGTGGAA-................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAATAAC------TTAATACT.1811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGCTGGCGCGTTACAGT.................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTCCAAG-C--------------GATCGGTGGAA-A...............................................2411.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCGCGTTACAGTCCAAG-C--------------............................................................2211.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCCAAG-C--------------GATCGGTGGAA-................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGTCCAAG-C--------------GATCGGTGGAA-................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-C--------------GATCGGTGGAA-ATA--------------------C........................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGTCCAAG-C--------------GATCGGTG....................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAG-C--------------GATCGGTGGAA-ATA--------------------CTT......................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAGCGCTGGCGCGTT......................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG-C--------------GATCGGTGGAA-ATA--------------------CTTAA....................2411.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCTGGCGCGTTACAGTCCAAG-C--------------............................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCGCGTTACAGTCCAAG-...........................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGCGTTACAGTCCAAG-C--------------............................................................2111.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCGCTGGCGCGTTACA...................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTCCAAG-C--------------GATCGGT.....................................................1911.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG-C--------------GATCGGTGGAA-ATA--------------------CTT......................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................GTCG-----CCTTAGGCGCGTCTACAAGTA------------------GCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-C--------------GATCGGTGGAA-ATA--------------------CTTAAA...................2311.001000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................AGCCATAGGCA---GCGGGCGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGTGGAA-ATA--------------------CTTAAAT..................2011.001000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGTGGAA-ATA--------------------CTTAAATAAC------.........2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGTCCAAG-C--------------GATCGGTG....................................................2111.001000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTACAGTCCAAG-C--------------GATC........................................................1911.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CAGCCATAGGCA---GCGGGCGCCCCA-----------------------------C-TC---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGCGCTGGCGCGTTAC....................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGTTTAGCGCTGGCGC.........................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
droMoj3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATTAAT--------TATACAGCCGCTTTGCTA-----------ACAAGTGGC------------------------C----------CCAGC---CTCA-----------------------------C-TC---GCCCGCCCA--CGCCTTTTACAGCAACCGCTCCAGCTTCAGCTCTCAGCTCTCAGCTCCC---AGC--TCCCAGCTGTGCCT-------------CTGTGTATCTG-------------TGCACTTGAAA-AGA---ATATATAATTTTTGTTGTGTTTT------------CG-CTATTTTTTATTG---------------------------------------------------------------TGTGCTGTATT-TTTTCTA--TGTT--T-TGTTCTGTTTTTATTCAGTTGTTT--GCTT--TATTCAACTTGGTATATAGTACTACTTACATAT------GTATGTATGTAC-ATATA-------------------------------------TGC-----ATGCGAGTGT-----GTGCCTGTGCT--------------------TATATCTCTTTGACGAGCTCTAC--------TCGCCTGTTTTGTTC-----------GCGTC---AACAACTGAACTCAATATGGAATA-AAAAATTATTGTTAATTTCAGTTTCAGTTCGGTGCTGGCGCGCAACAGTCCAAG-C--------------GATCGGTGAAA-ACGAAATTATATTCATAAACACAAACGCACATACATATATA---AATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAA-ACGAAATTATATTC..................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAACAGTCCAAG-C--------------GAT.........................................................1911.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGGTGCTGGCGC.........................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTCCAAG-C--------------GATCGGTGAAA-ACG.............................................2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-----------GCGTC---AACAACTGAACTCA.............................................................................................................................................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAACAGTCCAAG-C--------------GATC........................................................1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATAAACACAAACGCACATAC..............2411.001100000
droGri2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCACTTGAAA-AAAA--ACTTTTTGT------------------TGT--TGTTG---------------------GAATCTCTTTGTTGCT-----ATTT---------------TTT------------TCATGCCGCTTTTT-GTTTTTGTATT--T-TGTTGATATTTTATTATGTTATTCTCGCTTTTTACTCT---------------------AC-AATGTATATGTGTAAATATATATGATT-------------------------------------TTTTTTC-------TTTC-----TTCCACTTGT---------------------TTCGCTTGTTTTGTGCGC----------------------------------CAGACTCGTC---GACAACTGAACTCAATACGAA-TATCAAAAAAGTTTTTAATTTCAGTTTCGGTTTAGTGCTGGCGCGTTAAAGTCTACGGATCG----------------GTGAAA-AGG------------------------------------AA---GGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:34 AM