dsi_8760

########################################################################################################################################################################################################################################################## GCTCCAGCAGCAGCAGAAACAGCAATTGCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTTCAGATTTTTCCCAAACTGGTGTCGGTCTTCTCTATCCTCTATTGTGTCTGTCGCGACCTTGAGTCGACTTTTTCCCATGTGCTTGGATCCACTTGGGTACACATACTTTGTTTTGAGATGCTAGACATCTAACTGAATCCTACCTAGTCAAATAGCATCATATATATTTGATGTTTTTTTCGGTAT ************************************************...((..(((((.((((.(((.....)))))))...)))))..))............(((((((...((((.....)))).......((((.(((........))).))))....(((.(((......)))))).)))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M023 head	M024 male body	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M053 female body
......................................................GTTGACTGTTCTGACTTTCCCC..............................................................................................................................................................................	22	3	1	2.00	2	2	0	0	0	0	0	0
.......................................................................TTCCCAAACTGGTGTCGGT................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0	0
..................................................................................GTGTCGGTCTTCTCTATCCTCT..................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................ATGCTAGACATCTAACTGAATCCTACCTA........................................	29	0	1	1.00	1	0	0	1	0	0	0	0
............................................................................AAACTGGTGTCGGTCTTCTCTATCC.....................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................TCAGTCTTCTCTCTCCTATA.................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................TATTTGGTGATTTTTTCTGTAT	22	3	10	0.10	1	0	0	0	1	0	0	0
....................................................AAGTTGACGGGCCAGATTTT..................................................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................TATTTGATGATTTTTGCTGTAT	22	3	11	0.09	1	0	0	0	1	0	0	0
......................................................................GTTCTCAAACTGATGTCGG.................................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	0	1

CGAGGTCGTCGTCGTCTTTGTCGTTAACGTCTTACTGGTGGTCCTACCGTCATTCAACTGACAAGTCTAAAAAGGGTTTGACCACAGCCAGAAGAGATAGGAGATAACACAGACAGCGCTGGAACTCAGCTGAAAAAGGGTACACGAACCTAGGTGAACCCATGTGTATGAAACAAAACTCTACGATCTGTAGATTGACTTAGGATGGATCAGTTTATCGTAGTATATATAAACTACAAAAAAAGCCATA ************************************************...((..(((((.((((.(((.....)))))))...)))))..))............(((((((...((((.....)))).......((((.(((........))).))))....(((.(((......)))))).)))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs
..................................................................................................................................................................................CTCGACGATCTGTAGA........................................................	16	1	13	0.08	1	1	0	0
...................................................................................................................................................................................TCTTCGATCTGAAGATT......................................................	17	2	13	0.08	1	1	0	0
.............................................................CCAGTCTAAGAAGGTTTTG..........................................................................................................................................................................	19	3	17	0.06	1	0	1	0
..AGGACGTCGTCGTCTT........................................................................................................................................................................................................................................	16	1	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:16997484-16997733 -	dsi_8760	GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-CAGATTTTT---------C------------CCA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACCTTGAGTCGAC-------TTTTT-CCCAT--GTG---------------------CTTGGATCC----------ACTTGGGT---------ACACA----TACTTTGTTT-TGAGA----TGCT-A-----G-------AC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAAT------AGCA------TCA---------T-ATATATTTGATGT---TTTTTTCGG--TAT
droSec2	scaffold_7:1080455-1080705 -		GTTCCAGCAGCAGCAGAAACAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-CAGATTTTT---------C------------CCA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACTTTGAGTCGAC-------TTTTT-CCCAT--GTG---------------------CTTGGATCC----------ACTTGGGT---------ACACA----TACTTTGTTT-TGAGA----TGCT-A-----G-------AC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAAT------AGCA------TCA---------T-ATATATTTGATGT--GTTTTTTCGG--TAT
dm3	chr2L:17438986-17439239 -		GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-GAGATTTTT---------C------------CCA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACTTTGAGTCGAT-------TTTTT-CCCAT--GTG---------------------TTTGAATCC----------ACTTGGGT---------ACACA----TACTTTGTTT-TGAGATGGATGCT-A-----G-------AC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAAT------AGCA------TCA---------T-ATATATTTGATGT---TTTCTTCGG--TAT
droEre2	scaffold_4845:6811972-6812246 +		GCTCCAGCAGCAGCAGAAGCAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-GAGATTTTT---------C------------CTA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACTTTGAGTCGAC-------TTTTA--CCAT--GTGCATGTGCTCCACTTGGATCCACTTGGATCC----------ACTTGGGT---------ACATACGAGTACTTTGTTT-TGAGA----TGCC-A-----G-------CC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAATCCTCAAATCA------T-----------C-ATATATTTGATGT------TTTCGG--TAT
droYak3	2R:3663374-3663621 +		GCTCCAGCAGCAGCAGAAACAGCAGTT------GCAGAATGACCACCAGGATGCCAGTAAGTTGACTGTT-GAGATTTTT---------C------------CTA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCT----------------C------------------------------------TACTTTGAGTAGAC-------TTTTT-CCCAT--GCG------TTCCA----------TTCGGATCC----------ACTTGGGT---------ATA------TACTTTGTTT-TGAGA----TGCT-T-----G-------TC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAAT--------CA------T-----------C-ATATATTTGATGT---TT-TTTTGG--TAT
droEug1	scf7180000409016:62917-63174 -		GCTCCAACAGCAGCAGAAACAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-CAGATTTTC---------C------------ATA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTTTCTA------TC------------------------------------------CTATCCTCCTATTG-----------------------------TGTGTCTCTAT----------------C------------------------------------GGCTTTGATTCGAT-------TTTGT-CCCAT--GGT---------------------TTTGGTTCC----------ACTTGGGT---------ACA------TAATTTGTTT-TGAGA----TGCC-TTTG--G-------CC-----------------ATC-----------------TAAGTGA----ATCCTACCTAGTCAAAT------ATTT------T-----------T-ATATATTTGATAA--TATCTTTCGG--TAT
droBia1	scf7180000302422:6280079-6280331 +		GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAACGACCACCAAGATGGCAGTAAGTTCACTGTT-GAGATTTCC---------C------------ATA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTATA------TC------------------------------------------CTATCCT-CTGTTG-----------------------------TGTCTC--TCT----------------T------------------------------------GGCTTTGAGTCTAC-----ATTTTTT-TCCATGTGAG---------------------TTTGGATCA----------T----GGT---------GCC------TACTTTGTCT-TGAGA----TGCG-A-----G-------CC-----------------ATC-----------------TAACTGA--GAATCCTACCTAGTCAAAT------ATCT------A-----------TAAAATATTTGATCC---CT-TTTCGG--TAT
droTak1	scf7180000415079:148782-149034 +		GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAACGACCACCAGGATGGCAGTAAGTTGACTGTT-GAGATTTTC---------C------------TTA-----------------------A----A--------------CTGGTGT---------------C-GGTCTCCTCTA------TC------------------------------------------CTATCCT-CTATTG-----------------------------TGTCTC--TCT----------------C------------------------------------GACTTTAAGTCCAC-------TTTTTCCCCAAGTGAG---------------------TTTGGATCC----------TCTGGGGT---------GCA------TACTTTGTTT-TGAGA----TGCT-A-----G-------CC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCGAAT------ATCT------T-----------T-ATATATTTGACGT---TT-TTTCGG--TAT
droEle1	scf7180000491046:128778-129023 -		GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAACGACCACCAGGATGGCAGTAAGTTGACTGTT-GACAATTCC---------T--AT--------TTA-----------------------A----A--------------CTGGTGT---------------C-GGTCTCCTCTATC----TC-----------------------------------------------CT-ATATTG-----------------------------TGTCTC--TCGA---------------C------------------------------------GGCTTTGAGTCGAC-------TTTTT-CCCTTGTGTG---------------------TTTGGAGAC----------ACTTGGGT-------------------ACTTTGTTT-TGAGA----TGCC-A-----G-------CC-----------------ATC-----------------TAACTAA----ATCCTACCAAATCAAAT------ACCT------T-----------C-G--TATTTGATGA---TT-TTGCGG--TAT
droRho1	scf7180000780006:16814-17049 -		GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAGCGAGCACCAGGATGTCAGTAAGTTGACTGTT-GAGATTTTC---------T------------ATA-----------------------A----A--------------CTGGTGT---------------C-GGTCTCCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTC----T----------------C------------------------------------GGCTTTGAACCGAT-------T--TT-CCCGT--GTG---------------------TTTGGATCC----------ACTTGGGT-------------------ACTTTGTTT-TGAGA----TGCC-A-----G-------CC-----------------ATC-----------------TAACTGA----ATCCTACCTAATCAAAT------ATCT------T-----------C-G--TATTTGATGT---TTTTTTCGG--TAT
droFic1	scf7180000453855:208349-208622 -		GCTCCAACAGCAACAGAAACAGCAATT------GCAAAATGACCACCAAGGTGGCAGTAAGTTGACTGTT-GATATTTCC---------T------------ACA-----------------AAAAAAA----A--------------CTGGTGT---------------C-GGTCTCCTCC-----------------------------CAA--TCTATCTACCTATTTGTCCATCCC-CTATTG-----------------------------TGTCGT--TCG------------------------------------------------------GC-CCGAGTCGATATTATATTTGTG-CCCGTGGGTG---------------------TTTGGATCC----------ACTTGGGT-------------------AACTTGTTT-TGAGA----TGCA-A-----G-------CC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAGT------ATCT------T-----------G-A--TATTTGATCT---TTTTTTCGG--TAT
droKik1	scf7180000302472:747523-747789 -		GCTAGCGCAGCAGCAGAAACAGCAGTT------ACAGAACGACCATCAGGATGGCAGTAAGTCAGCTGTT-GAGACCTTT---------CTTCTT---------A-----------GCTATA------AACTC-------------------TGTTTGCCTCTCTGGTGGC-GGTCCACTGTC------CT-----------------------------------------------CT-CTATTG-----------------------------T--------------------------C-------------------------------------GATTTGAATATAT-----A-TCTCT-CCCCT--GTG---------------------TACGGATCC----------ACTTGGGT-------------------GCTTTGTTTGTGAGA----TGCC-ACAGATG-------CC-----------------ATC-----------------TAACCGATCCGATCCTACCTGGTCGAC-------AGCG----------------TTC-GT-TGTTCGACAC---CT-TTTCGGTGTAT
droAna3	scaffold_12916:3436557-3436840 +		GCTCCAGCAGCAGCAGAAACAGCAGTT---GCAACAGAGCGACCATCCGGATGGCAGTAAGTCATCAGTT-GTCATTGTC---------CCTATT---------AT----------GCCACAT-----AACTCA--------------TTGGTGT---------------T-GGCTCCATTTGTGGCGCTCCATCTTGGGGGCGCCCCCACTCGTCTCTCTCT--C-------------------TG-----------------------------TGTTTC-------------------------------------------------------------------TTGAT-----A-TTCTC-CCCATCTGTG---------------------TCTGGGTCT----------CCTTGGGT-------------------ACTTTGTCT-TGGGA----TGCC-A-----G-------CC-----------------ATC-----------------CAACTG-----ATCCTACCTGGTCAAAT------AGTG----------------TTC-G--TATTTGACGTATTTTTTTTCGG--TAT
droBip1	scf7180000396737:1334042-1334327 -		GCTCCAGCAGCAGCAGAAACAGCAGTT---GCAACAGACCGACCATCCGGATGGCAGTAAGTCATCAGTT-GTCATTGTC---------C------------CTGTCCCT-GTAATGCCACATA-G----CTCA--------------TTGGTGT---------------T-GGCCCCATTTGTGGCGTCCCGTCTTGGGGGCGCCTCTGCCCGCCTCTCTCT--C--------------------------------------------------TGTTTC-------------------------------------------------------------------TCGAT-----ATTTTCC-CCCATCTGTG---------------------TCTGGGTCT----------CCTTGGGT-------------------ACTTTGTCT-TGGGA----TGCC-A-----G-------CC-----------------ATC-----------------CAACTG-----ATCCTACCTGGTCGAAT------AGTG----------------TTC-G--TATTTGACTT---TTTTTTTGG--TAT
dp5	4_group3:3541330-3541660 -		GCTGCAGCAGCAGCAGAAGCAGCAATT------ACAGAACGATCATCAGGATGGCAGTAAGTTGTTACTTGTAGACTCTCTGTCCTGTCCT------CC---TTCTACCT---------ACCGAA-----CATT--------------CTGGTGTT--------------G-GGT-CC-TGTCTCCCTTTCCTTTTTCGTGGTGCT---GGTTGTCTCTGTCT--A-----------------------------------------------------------------------------TGCCTTTTGAGGGAAGTGGTTTTTTACTG--TGTGTTGGAATCGAATCGAA-------TT--T-CCAAT--TTG---------------------ATTGGA-------------------------------AATA-----ACTTTGTCT-TGAGA----TGTCCA-----G-------AC-----------------ATCAC---------------AAACTG-----ATCCTACCTAATCGAAT------ATATGATGTATTATATGATATTC-GTATATTTGATAC--TTGTTTTCGG--TAT
droPer2	scaffold_1:5021497-5021827 -		GCTGCAGCAGCAGCAGAAGCAGCAATT------ACAGAACGATCATCAGGATGGCAGTAAGTTGTTACTTGTAGACTCTCTGTCCTGTCCT------CC---TTCTACCT---------ACCAAA-----CATT--------------CTGGTGTT--------------G-GGT-CC-TGTCTCCCTTTCCTTTTTCGTGGTGCT---GGTTGTCTCTGTCT--A-----------------------------------------------------------------------------CGCCTTTTAAGGGAAGTGGTTTTTTACTG--TGTGTTGGAATTGAATCGAA-------TT--T-CCAAT--TTG---------------------ATTGGA-------------------------------AATA-----ACTTTGTCT-TGAGA----TGTCCA-----G-------AC-----------------ATCAC---------------AAACTG-----ATCCTACCTAATCGAAT------ATATGATGTATTATATGATATTC-GTATATTTGATAC--TTGTTTTCGG--TAT
droWil2	scf2_1100000004949:1598890-1598962 -		ACTGCAACAACAGCAGAAACAACAATT------ACAGAATGATCATCAGGATAGTAGTAAGTTTTC-ATT-GATTTTTTT---------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13246:545509-545810 +	dvi_21388	GCTCCAGCAGCAGCAAAAACAGCAGCA------TCAGCTTGAACCCCAGGATGGGAGTAAGTTTTA--TA-GAATTTTTC---------A------------CTT-----------------------A----C--------------CTGGTTG---------------C-GGGCTT-TGTCT-----------TTTGTGGTGCT---GGTTTACT----------------------------TGTCCCGTTCTCACCTGTCCAGTTTGTCTCGTTTGTCCCTGT-GGTTTTTTTATCAGGTGTGTTTTGGCGGATGCAACTATTTGTTGCGTGTGTTGG-------------------------------------------------------------ATAAATCCAATCCGAGCGCAGTTTTGTTTGAGTGTG-----ACATCGATT-AG------------------------------TCAATTGATAAGAAAATC-----------------AAAACAG----ATCCTACCTATTTAAGT----------------------------------------------------------AT
droMoj3	scaffold_6500:510919-511164 +	dmo_1425	GCTCCAGCAGCAGCAGAAGCAACAGCA------TCACAATGATCATCAAGATCGT---AAGTTTTC-------------C---------T--ATTTTCA---CTTCACTTGGCGGTTGGTGTGT-GGGG----TGTGGTGGGTGGTGGTTGGTGT---------------TTAGTCTT--TCG------TC------------------------CTCTATCT-----------------------C-----------------------------TATCTC--TGT----------------C------------------------------------CATTCTCTGTCCTC-------TTGCT-CTGTT--GTG---------------------TGTGGATCTATCT------AC-----T---------GCT------------------------------CA-----G-------GC-----------------AGCATTGGTTTGAAGATAGACAACTT-----ATCCTACCTAG---AAT------AT-------------------------------------------TTCG--TAT
droGri2	scaffold_15252:16702618-16702897 -		GCTCCAGCAACAACAGAAACAACAACAGCAGCATCAGAATGATCATCAGGATGGTAGTAAGTTTTTCTCT----------------------ATGTGCATTTTTACACTT-GCATTGGTTTTTT-GGGA----T--------------CTGGTGT---------------T-GGTTTAATCTGTG----TT-----------------------------------------------CT-CTGTTG-----------------------------TCCTGG--TCA----------------A------------------------------------TGTTTTCGATCAAT-------CTTTA---AAT--TTA----------------ATATTGTCGGATCT----------AATGAAGT--------------------------TT-TGC-------------AGAAGACATCAATCAACTACTTAATAGTGAAA-T-----------------CAACTG-----ATCCTACCTATATATAT------ATACTA----------------T---ATACTGTAT--------GTTTCG--TAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-CAGATTTTT---------C------------CCA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACCTTGAGTCGAC-------TTTTT-CCCAT--GTG---------------------CTTGGATCC----------ACTTGGGT---------ACACA----TACTTTGTTT-TGAGA----TGCT-A-----G-------AC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAAT------AGCA------TCA---------T-ATATATTTGATGT---TTTTTTCGG--TAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................TT---------C------------CCA-----------------------A----A--------------CTGGTGT---------------C-GGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CT..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TGCT-A-----G-------AC-----------------ATC-----------------TAACTGA----ATCCTACCTA...................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................A-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------C..................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTTCCAGCAGCAGCAGAAACAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-CAGATTTTT---------C------------CCA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACTTTGAGTCGAC-------TTTTT-CCCAT--GTG---------------------CTTGGATCC----------ACTTGGGT---------ACACA----TACTTTGTTT-TGAGA----TGCT-A-----G-------AC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAAT------AGCA------TCA---------T-ATATATTTGATGT--GTTTTTTCGG--TAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------T-ATATATTTGATGT--GTTTTTTCG......	24	1	1.00	1	0	1	0	0
...CCAGCAGCAGCAGAAACAGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGT---------ACACA----TACTTTGTT.............................................................................................................................................................	20	1	1.00	1	0	0	0	1
..........................T------GCAGAATGACCACCAGGATGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
........................................GACCACCAGGATGGCAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	1	0

dm3

GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-GAGATTTTT---------C------------CCA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACTTTGAGTCGAT-------TTTTT-CCCAT--GTG---------------------TTTGAATCC----------ACTTGGGT---------ACACA----TACTTTGTTT-TGAGATGGATGCT-A-----G-------AC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAAT------AGCA------TCA---------T-ATATATTTGATGT---TTTCTTCGG--TAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................T------GCAGAATGACCACCAGGATGGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	36.00	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TGAGATGGATGCT-A-----G-------AC-----------------ATC-----------------........................................................................................	23	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0
.........................TT------GCAGAATGACCACCAGGATGGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0
.....................................................................................................................................................................................................................................................TG-----------------------------TGTCTG--TCG----------------C------------------------------------GACTTTGAGTCGAT-------........................................................................................................................................................................................................................................................	26	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0
.................................GCAGAATGACCACCAGGATGGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	1	0	0	0
....................................................................................................................................................................................................................................................TTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACTTTGAGTCGAT-------........................................................................................................................................................................................................................................................	27	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0
.........................TT------GCAGAATGACCACCAGGATGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0
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.................................................GATGGCAGTAAGTTGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTT-TGAGATGGATGCT-A-----G-------AC-----------------AT..........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................G---------------------TTTGAATCC----------ACTTGGGT---------ACA............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TT---------C------------CCA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CAGCAGCAGCAGAAACAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AGCAGCAGCAGAAACAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CAGCAGCAGCAGAAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AGCAGCAGCAGAAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCTCCAGCAGCAGCAGAAGCAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-GAGATTTTT---------C------------CTA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCG----------------C------------------------------------GACTTTGAGTCGAC-------TTTTA--CCAT--GTGCATGTGCTCCACTTGGATCCACTTGGATCC----------ACTTGGGT---------ACATACGAGTACTTTGTTT-TGAGA----TGCC-A-----G-------CC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAATCCTCAAATCA------T-----------C-ATATATTTGATGT------TTTCGG--TAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTGATGT------TTTCGG--TA.	21	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAGTACTTTGTTT-TGAGA----..................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.......................AATT------GCAGAATGACCACCAGGATGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TCCACTTGGATCC----------ACTTGGGT---------ACA............................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0

droYak3

GCTCCAGCAGCAGCAGAAACAGCAGTT------GCAGAATGACCACCAGGATGCCAGTAAGTTGACTGTT-GAGATTTTT---------C------------CTA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTG--TCT----------------C------------------------------------TACTTTGAGTAGAC-------TTTTT-CCCAT--GCG------TTCCA----------TTCGGATCC----------ACTTGGGT---------ATA------TACTTTGTTT-TGAGA----TGCT-T-----G-------TC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAAT--------CA------T-----------C-ATATATTTGATGT---TT-TTTTGG--TAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................CT----------------C------------------------------------TACTTTGAGTAGAC-------TTTTT-CCC...............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................AGTT------GCAGAATGACCACCAGGATGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CCCAT--GCG------TTCCA----------TTCGGATCC----------................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT-TGAGA----TGCT-T-----G-------TC-----------------AT..........................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................ATTTTT---------C------------CTA-----------------------A----A--------------CTGGTGT---------------C-GGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-ATATATTTGATGT---TT-TTTT.......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................ACCAGGATGCCAGTAAGTTGACTGTT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............CAGAAACAGCAGTT------GCAGAATGACCACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............GAAACAGCAGTT------GCAGAATGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....AGCAGCAGCAGAAACAGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GCTCCAACAGCAGCAGAAACAGCAATT------GCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTT-CAGATTTTC---------C------------ATA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTTTCTA------TC------------------------------------------CTATCCTCCTATTG-----------------------------TGTGTCTCTAT----------------C------------------------------------GGCTTTGATTCGAT-------TTTGT-CCCAT--GGT---------------------TTTGGTTCC----------ACTTGGGT---------ACA------TAATTTGTTT-TGAGA----TGCC-TTTG--G-------CC-----------------ATC-----------------TAAGTGA----ATCCTACCTAGTCAAAT------ATTT------T-----------T-ATATATTTGATAA--TATCTTTCGG--TAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAACGACCACCAAGATGGCAGTAAGTTCACTGTT-GAGATTTCC---------C------------ATA-----------------------A----A--------------CTGGTGT---------------C-GGTCTTCTATA------TC------------------------------------------CTATCCT-CTGTTG-----------------------------TGTCTC--TCT----------------T------------------------------------GGCTTTGAGTCTAC-----ATTTTTT-TCCATGTGAG---------------------TTTGGATCA----------T----GGT---------GCC------TACTTTGTCT-TGAGA----TGCG-A-----G-------CC-----------------ATC-----------------TAACTGA--GAATCCTACCTAGTCAAAT------ATCT------A-----------TAAAATATTTGATCC---CT-TTTCGG--TAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAACGACCACCAGGATGGCAGTAAGTTGACTGTT-GAGATTTTC---------C------------TTA-----------------------A----A--------------CTGGTGT---------------C-GGTCTCCTCTA------TC------------------------------------------CTATCCT-CTATTG-----------------------------TGTCTC--TCT----------------C------------------------------------GACTTTAAGTCCAC-------TTTTTCCCCAAGTGAG---------------------TTTGGATCC----------TCTGGGGT---------GCA------TACTTTGTTT-TGAGA----TGCT-A-----G-------CC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCGAAT------ATCT------T-----------T-ATATATTTGACGT---TT-TTTCGG--TAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAACGACCACCAGGATGGCAGTAAGTTGACTGTT-GACAATTCC---------T--AT--------TTA-----------------------A----A--------------CTGGTGT---------------C-GGTCTCCTCTATC----TC-----------------------------------------------CT-ATATTG-----------------------------TGTCTC--TCGA---------------C------------------------------------GGCTTTGAGTCGAC-------TTTTT-CCCTTGTGTG---------------------TTTGGAGAC----------ACTTGGGT-------------------ACTTTGTTT-TGAGA----TGCC-A-----G-------CC-----------------ATC-----------------TAACTAA----ATCCTACCAAATCAAAT------ACCT------T-----------C-G--TATTTGATGA---TT-TTGCGG--TAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCTCCAGCAGCAGCAGAAACAGCAATT------GCAGAGCGAGCACCAGGATGTCAGTAAGTTGACTGTT-GAGATTTTC---------T------------ATA-----------------------A----A--------------CTGGTGT---------------C-GGTCTCCTCTA------TC-----------------------------------------------CT-CTATTG-----------------------------TGTCTC----T----------------C------------------------------------GGCTTTGAACCGAT-------T--TT-CCCGT--GTG---------------------TTTGGATCC----------ACTTGGGT-------------------ACTTTGTTT-TGAGA----TGCC-A-----G-------CC-----------------ATC-----------------TAACTGA----ATCCTACCTAATCAAAT------ATCT------T-----------C-G--TATTTGATGT---TTTTTTCGG--TAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTCCAACAGCAACAGAAACAGCAATT------GCAAAATGACCACCAAGGTGGCAGTAAGTTGACTGTT-GATATTTCC---------T------------ACA-----------------AAAAAAA----A--------------CTGGTGT---------------C-GGTCTCCTCC-----------------------------CAA--TCTATCTACCTATTTGTCCATCCC-CTATTG-----------------------------TGTCGT--TCG------------------------------------------------------GC-CCGAGTCGATATTATATTTGTG-CCCGTGGGTG---------------------TTTGGATCC----------ACTTGGGT-------------------AACTTGTTT-TGAGA----TGCA-A-----G-------CC-----------------ATC-----------------TAACTGA----ATCCTACCTAGTCAAGT------ATCT------T-----------G-A--TATTTGATCT---TTTTTTCGG--TAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTAGCGCAGCAGCAGAAACAGCAGTT------ACAGAACGACCATCAGGATGGCAGTAAGTCAGCTGTT-GAGACCTTT---------CTTCTT---------A-----------GCTATA------AACTC-------------------TGTTTGCCTCTCTGGTGGC-GGTCCACTGTC------CT-----------------------------------------------CT-CTATTG-----------------------------T--------------------------C-------------------------------------GATTTGAATATAT-----A-TCTCT-CCCCT--GTG---------------------TACGGATCC----------ACTTGGGT-------------------GCTTTGTTTGTGAGA----TGCC-ACAGATG-------CC-----------------ATC-----------------TAACCGATCCGATCCTACCTGGTCGAC-------AGCG----------------TTC-GT-TGTTCGACAC---CT-TTTCGGTGTAT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCTCCAGCAGCAGCAGAAACAGCAGTT---GCAACAGAGCGACCATCCGGATGGCAGTAAGTCATCAGTT-GTCATTGTC---------CCTATT---------AT----------GCCACAT-----AACTCA--------------TTGGTGT---------------T-GGCTCCATTTGTGGCGCTCCATCTTGGGGGCGCCCCCACTCGTCTCTCTCT--C-------------------TG-----------------------------TGTTTC-------------------------------------------------------------------TTGAT-----A-TTCTC-CCCATCTGTG---------------------TCTGGGTCT----------CCTTGGGT-------------------ACTTTGTCT-TGGGA----TGCC-A-----G-------CC-----------------ATC-----------------CAACTG-----ATCCTACCTGGTCAAAT------AGTG----------------TTC-G--TATTTGACGTATTTTTTTTCGG--TAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------------ACTTTGTCT-TGGGA----TGCC-A-----G-------CC-----------------............................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................TGGTGT---------------T-GGCTCCATTTGTGGCGCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
................................AACAGAGCGACCATCCGGATGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..............................GCAACAGAGCGACCATCCGGATGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................AACAGAGCGACCATCCGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............AGAAACAGCAGTT---GCAACAGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCT-TGGGA----TGCC-A-----G-------CC-----------------A...........................................................................................................	20	1	1.00	1	0	0	0	0	1	0

droBip1

GCTCCAGCAGCAGCAGAAACAGCAGTT---GCAACAGACCGACCATCCGGATGGCAGTAAGTCATCAGTT-GTCATTGTC---------C------------CTGTCCCT-GTAATGCCACATA-G----CTCA--------------TTGGTGT---------------T-GGCCCCATTTGTGGCGTCCCGTCTTGGGGGCGCCTCTGCCCGCCTCTCTCT--C--------------------------------------------------TGTTTC-------------------------------------------------------------------TCGAT-----ATTTTCC-CCCATCTGTG---------------------TCTGGGTCT----------CCTTGGGT-------------------ACTTTGTCT-TGGGA----TGCC-A-----G-------CC-----------------ATC-----------------CAACTG-----ATCCTACCTGGTCGAAT------AGTG----------------TTC-G--TATTTGACTT---TTTTTTTGG--TAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCTGCAGCAGCAGCAGAAGCAGCAATT------ACAGAACGATCATCAGGATGGCAGTAAGTTGTTACTTGTAGACTCTCTGTCCTGTCCT------CC---TTCTACCT---------ACCGAA-----CATT--------------CTGGTGTT--------------G-GGT-CC-TGTCTCCCTTTCCTTTTTCGTGGTGCT---GGTTGTCTCTGTCT--A-----------------------------------------------------------------------------TGCCTTTTGAGGGAAGTGGTTTTTTACTG--TGTGTTGGAATCGAATCGAA-------TT--T-CCAAT--TTG---------------------ATTGGA-------------------------------AATA-----ACTTTGTCT-TGAGA----TGTCCA-----G-------AC-----------------ATCAC---------------AAACTG-----ATCCTACCTAATCGAAT------ATATGATGTATTATATGATATTC-GTATATTTGATAC--TTGTTTTCGG--TAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................GTAGACTCTCTGTCCTGTCCT------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA-----ACTTTGTCT-TGAGA----T.................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AATT------ACAGAACGATCATCAGGATGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GCAGCAGCAGAAGCAGCAATT------ACAGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................TCAGGATGGCAGTAAGTTGTTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................GCAGCAATT------ACAGAACGATCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GCCTTTTGAGGGAAGTGGTT.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCTGCAGCAGCAGCAGAAGCAGCAATT------ACAGAACGATCATCAGGATGGCAGTAAGTTGTTACTTGTAGACTCTCTGTCCTGTCCT------CC---TTCTACCT---------ACCAAA-----CATT--------------CTGGTGTT--------------G-GGT-CC-TGTCTCCCTTTCCTTTTTCGTGGTGCT---GGTTGTCTCTGTCT--A-----------------------------------------------------------------------------CGCCTTTTAAGGGAAGTGGTTTTTTACTG--TGTGTTGGAATTGAATCGAA-------TT--T-CCAAT--TTG---------------------ATTGGA-------------------------------AATA-----ACTTTGTCT-TGAGA----TGTCCA-----G-------AC-----------------ATCAC---------------AAACTG-----ATCCTACCTAATCGAAT------ATATGATGTATTATATGATATTC-GTATATTTGATAC--TTGTTTTCGG--TAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTAATCGAAT------ATATGAT...............................................	21	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAC---------------AAACTG-----ATCCTACCTAATC................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAT--TTG---------------------ATTGGA-------------------------------AATA-----ACTTTGTCT-...........................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAT--TTG---------------------ATTGGA-------------------------------AATA-----ACTTTGTCG-...........................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droWil2

ACTGCAACAACAGCAGAAACAACAATT------ACAGAATGATCATCAGGATAGTAGTAAGTTTTC-ATT-GATTTTTTT---------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............GAAACAACAATT------ACAGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.....................ACAATT------ACAGAATGATCATCAGGATAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.......................AATT------ACAGAATGATCATCAGGATAGTAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
...........................................CATCAGGATAGTAGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............................................ATCAGGATAGTAGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
........................ATT------ACAGAATGATCATCAGGATAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
........................ATT------ACAGAATGATCATCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
......................CAATT------ACAGAATGATCATCAGGATAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
........................................GATCATCAGGATAGTAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0

droVir3

GCTCCAGCAGCAGCAAAAACAGCAGCA------TCAGCTTGAACCCCAGGATGGGAGTAAGTTTTA--TA-GAATTTTTC---------A------------CTT-----------------------A----C--------------CTGGTTG---------------C-GGGCTT-TGTCT-----------TTTGTGGTGCT---GGTTTACT----------------------------TGTCCCGTTCTCACCTGTCCAGTTTGTCTCGTTTGTCCCTGT-GGTTTTTTTATCAGGTGTGTTTTGGCGGATGCAACTATTTGTTGCGTGTGTTGG-------------------------------------------------------------ATAAATCCAATCCGAGCGCAGTTTTGTTTGAGTGTG-----ACATCGATT-AG------------------------------TCAATTGATAAGAAAATC-----------------AAAACAG----ATCCTACCTATTTAAGT----------------------------------------------------------AT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................TGTCCAGTTTGTCTCGTTTGTC.......................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TACT----------------------------TGTCCCGTTCTCACCTG...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AGGTGTGTTTTGGCGGATGCA................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ATCAGGTGTGTTTTGGCGGATGCAACT.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCAGCAGCAGCAAAAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGAACCCCAGGATGGGAGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................GCTTGAACCCCAGGATGGGAGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CCCCAGGATGGGAGTAAGTTTTA--TA-GA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATT-AG------------------------------TCAATTGATAAG...............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTTTGTTTGAGTGTG-----ACA..................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................AGCA------TCAGCTTGAACCCCAGGATGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTGGCGGATGCAACTATTTGT.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TTC---------A------------CTT-----------------------A----C--------------CTGGTTG---------------C-GGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CCTGTCCAGTTTGTCTCGTTTG.........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

GCTCCAGCAGCAGCAGAAGCAACAGCA------TCACAATGATCATCAAGATCGT---AAGTTTTC-------------C---------T--ATTTTCA---CTTCACTTGGCGGTTGGTGTGT-GGGG----TGTGGTGGGTGGTGGTTGGTGT---------------TTAGTCTT--TCG------TC------------------------CTCTATCT-----------------------C-----------------------------TATCTC--TGT----------------C------------------------------------CATTCTCTGTCCTC-------TTGCT-CTGTT--GTG---------------------TGTGGATCTATCT------AC-----T---------GCT------------------------------CA-----G-------GC-----------------AGCATTGGTTTGAAGATAGACAACTT-----ATCCTACCTAG---AAT------AT-------------------------------------------TTCG--TAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................T-GGGG----TGTGGTGGGTGGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	3
..........................................................................................................................GT-GGGG----TGTGGTGGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................T-GGGG----TGTGGTGGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................GGGG----TGTGGTGGGTGGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................GT----------------C------------------------------------CATTCTCTGTCCTC-------TTGCT-CTGTT--...........................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................T-GGGG----TGTGGTGGGTGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................T-GGGG----TGTGGTGGGTGGTGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........GCAGCAGAAGCAACAGCA------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0

droGri2

GCTCCAGCAACAACAGAAACAACAACAGCAGCATCAGAATGATCATCAGGATGGTAGTAAGTTTTTCTCT----------------------ATGTGCATTTTTACACTT-GCATTGGTTTTTT-GGGA----T--------------CTGGTGT---------------T-GGTTTAATCTGTG----TT-----------------------------------------------CT-CTGTTG-----------------------------TCCTGG--TCA----------------A------------------------------------TGTTTTCGATCAAT-------CTTTA---AAT--TTA----------------ATATTGTCGGATCT----------AATGAAGT--------------------------TT-TGC-------------AGAAGACATCAATCAACTACTTAATAGTGAAA-T-----------------CAACTG-----ATCCTACCTATATATAT------ATACTA----------------T---ATACTGTAT--------GTTTCG--TAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_8760

2l:16997534-16997683 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.7	-28.7	-28.2