dsi_8748

CDS [3r_24923431_24923674_+]; three_prime_UTR [3r_24923675_24924228_+]; exon [3r_24923431_24924228_+]

########################################################################################################################################################################################################################################################## ATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGGTGCACCCCATCTCAAAGTTATAAATGCGCGAAGCGCAATGCAACAACACTGAAATTGGATTCTAAGAAAACATAAAATGCATATAGGCATTGCCAAAATTCCATTGCGCTGAGGGCATGATGGATTTTTGGA ********************************************************************************.................(((((((((((((((((((.....)))).))))))))......(((((...))))).................)))))))..........***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR618934 dsim w501 ovaries	M053 female body	M025 embryo	O002 Head	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
.........................................................................................................................................................................................................................TCCATTGCGCTGAGGGCATGATGGA........	25	0	1	2.00	2	0	2	0	0	0	0	0
.......................................................................................................................................................................................................TATAGGCATTGCCAAAATTCCATT...........................	24	0	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................................ACTGAAATTGGATTCTAAGAAAAC.............................................................	24	0	1	1.00	1	0	0	0	1	0	0	0
.............................................AAACTGTGAGCCTCGATTTTGCCT.....................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
.............................................AAACTGTGAGCCTCGATTTTGCCG.....................................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0
..................................................................................CGCCAACGCTGCTCCAAA......................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
..............................................................................................................................................................................................................ATTGCCAAAATTCCATTGCG........................	20	0	1	1.00	1	0	0	0	0	1	0	0
.......CTCAGCCGGCTCCAGTGGAAC..............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................GACAATTAGCCGCCAACGCTGCTCCAAA......................................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................TGCGCTGAGGGCATGATGGATTTTTG..	26	0	1	1.00	1	0	1	0	0	0	0	0
.........CAGCCGGCTCCAGTGGAAC..............................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
...............................................ACTGTGAGGCTAGATTTTGGC......................................................................................................................................................................................	21	3	2	0.50	1	0	0	0	0	0	1	0
................................................................................................................................................................ACAACCCTGAAATCGGAT........................................................................	18	2	8	0.13	1	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................GCACTGAGGGCTTGTTGGAT.......	20	3	9	0.11	1	0	0	0	1	0	0	0
..GCTACCTGCGCCGGCTC.......................................................................................................................................................................................................................................	17	2	11	0.09	1	0	1	0	0	0	0	0

TACGATGGAGTCGGCCGAGGTCACCTTGTCACCCGCTGAGGACGGTTTGACACTCGGAGCTAAAACGGAGAACTGTTAATCGGCGGTTGCGACGAGGTTTCAGGTTCGAAACTCACCCACGTGGGGTAGAGTTTCAATATTTACGCGCTTCGCGTTACGTTGTTGTGACTTTAACCTAAGATTCTTTTGTATTTTACGTATATCCGTAACGGTTTTAAGGTAACGCGACTCCCGTACTACCTAAAAACCT ***********************************************************.................(((((((((((((((((((.....)))).))))))))......(((((...))))).................)))))))..........********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
...................................................................................................................CCCAAGTGGGTTAGAGTT.....................................................................................................................	18	2	2	3.00	6	6	0	0	0	0	0
.........................................................................................................................TGGGGTAGAGTTTCAATATTT............................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................GTTGCGACGAGGTTTCAGGTT................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0
......................ACCTTGTCACCCGCTGAGGAC...............................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
..................................GCTGAGGACGGTTTGACACTC...................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................CGTAGGGTAGAGTTTCAATGTT.............................................................................................................	22	2	1	1.00	1	0	0	1	0	0	0
..................................................................................................................ACCCAAGTGGGTTAGAGTT.....................................................................................................................	19	2	2	0.50	1	1	0	0	0	0	0
...................................................................................................................CCCAAGTGGGTTAGAGTTC....................................................................................................................	19	3	9	0.22	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................GGTAACGCCACTCCAGT...............	17	2	13	0.08	1	0	0	0	0	1	0
.......................................................................................................................................................................ACTTTAACGTAAGATGCTAT...............................................................	20	3	15	0.07	1	0	0	0	0	0	1
.................................................................................................................................................................................AAGATTCTTTTGGAT..........................................................	15	1	19	0.05	1	0	0	0	0	0	1
.......GAGTCGGACGAGGTCGC..................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3r:24923601-24923850 +	dsi_8748	ATGCTACCTCA---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCA---CC------CCATCTCAAAGTT-AT---AAATGCGCGAAGCGCAATGCAA-----CAA--CAC---TG-AAATTGGATTC-T--------------------------AA--------------------------GAAAACAT--------------AAAATG-------C-ATATAGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA
droSec2	scaffold_4:4419795-4420044 +		ATGCTACCTCG---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTTCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TCCA---CC------CCATCTCAAAGTT-AC---AAATGCGCGAAGCGCAATGCAA-----CAA--CAC---TG-AAATTGGATTC-T--------------------------AA--------------------------GAAAACAT--------------AAAATG-------C-ATATAGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA
dm3	chr3R:25567042-25567291 +		ATGCTACCTCA---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--AGCA---CC------CCATCTCAAAGTT-AC---AAATGCGCGAAGCGCAATGCAA-----CAA--AAC---T-AAAATTGGATTC-T--------------------------AA--------------------------GAAAACAT--------------TAAATG-------C-ATATAGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA
droEre2	scaffold_4820:2435039-2435286 -		ATGCTACCTCA---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCA---CC------CCAGCTCAAAGTT-AT---AAGTGCGCGAAGCGCAATGCAA-----GAA--AAC---TG-AAATTGGATTC-T--------------------------AA--------------------------CAAAACAT--------------AAAATG-------C-AT--AGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA
droYak3	3R:20902567-20902814 -		ATGCTACCTCA---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCA---CC------CCATCTCAAAGTT-AT---AAGTGCGCGAAGCGCAATGCAA-----CAA--AAC---TG-AAATTGGATTC-T--------------------------AA--------------------------CAAAACAT--------------AAAATG-------C-AT--AGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA
droEug1	scf7180000409555:40102-40346 +		ATGCTACCTCT---GCT---GG---CTCCAG---------TGGAACGGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCTTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGAGGG--TACACAT-C------CCTTCTCAAAGTG-AA---AATTGCGCGAAGCGCAATGCAA-----AATA-CAC-------AATTGGATTC-T--------------------------AAACAA----------------------CAA--------------AAAT-AAAGT----------------GCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA
droBia1	scf7180000302113:1842000-1842250 -		ATGCCACCTCG---GCC---GG---CTCCAG---------CGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TACCCAACC------CCACTTCAAAGTT-GT---AAATGCGCAAAGCGCAATGCAA-----AAAACAAC---AGAAAATTGGATTA-C--------------------------AA--------------------------CAGAAAAG----------AA-TAT-------------A---AAGCATTGCCAA----A--------ACTCCATTGCGCTGAGGGCAT-GGTGGATT---TTTGGA
droTak1	scf7180000415658:86071-86312 -		ATGCCACCGCA---GCCAGTGG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGA--TT-AAAA-C------CCAACTCAAAGTT-AC---AACTGCGCAAGGCGCAATGCAA-----AAAA-AAAATAAGAAAATTGGATTC-A--------------------------A--------------------------------------------AAAT---AAT------------------ATTTCCAA----A--------ATCCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA
droEle1	scf7180000491280:1819574-1819827 +		ATGCCACCTCT---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCACAA-C------CCAACTCAAGGCT-AC---AACTGCGCGAAGCGCAATGCAA-----AAAA-AAC---AGAAAATTGGATTCAC--------------------------AA--------------------------AAAAACAA-------------TATAATG-------C-AA--AGGCATTACCAA----A--------GTTCCATTGCGCTGAGGGCAT-TTTGGATT---TTTGGA
droRho1	scf7180000780093:86326-86575 -		ATGCTACCTCT---GCT---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCACAA-C------CCAACTCAAAGTT-AC---AACTGCGCGAAGCGCAATGAAA-----AAA--AAC---AGAAAATTGGATTC-C--------------------------AA---------------------------AAAACAT-------------TACAATG-------C-TT---TGCATTGCCAA----A--------ATACCATTGCGCTGAGTGCAT-TATGGATT---TTTGGA
droFic1	scf7180000453826:1030527-1030779 -		ATGCCACTGCT---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTGAATGGGAGTACACAA-C------CC--CTCAAAGTT-AC---AATTGCGCGAAGCGCAATGCAA-----AAAA-AAAAC-TGAAAATTGGATTC-T--------------------------A--------------------------------CAT-----AAAAAAAT---TATG-------C-TT---TGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATA---TTTGGA
droKik1	scf7180000302388:806211-806469 -		ATGCCACCTCA---GCT---GG---CACCAGCAACAG---TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TCCCAAG-C------CCAACTCAAAGTT-AC---AAATGCGCGAAGCGCAATGCAG-----GAC--ACG---AGAAAATTGGATA------------------------------A--------------------------CAA--------------AAAT---AATGAAAACTAC-TT---TGCATAGCCAA----A--------ATACCATTGCGCTGAGGGCAAAAATGGATTT--TTTGGA
droAna3	scaffold_12911:5269470-5269729 +		ACGCCACCTCA---TCC---GG---CTCCAG---------CGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGAG--ATTACCA-C------TCATCTCAAGGCTGAA---AAGTGCGCGAGGCGCAATGCAG-----AAT--ATC---ATTTATTTGGACGC-A--------------------------AATTAA-A----------------ATTAAAAAAAAA--------------AAAATG-------C-TT---TGCATTGTCAA----A--------ATTCCATTGCGCTGAGGGCAC-GATGGATT---TTTGGA
droBip1	scf7180000395061:13753-14005 -		AAGTCACCTCA---TCC---GG---CTCCAT---------CGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGAC--TACC--A-C------TCATCTCAAGGCTGAA---AAGTGCGCGAGGCGCAATGCAG-----AAT--ATC---ATTTGATTGGACAC-A--------------------------CATTAA-A----------------A---TTAA-------------AAA---TAATG-------C-TT---TACATTGTCAA----A--------ATTCCATTGCGCTGAGGGCAC-GATGGATT---TTTGGA
dp5	2:2433694-2433951 +		ATGCCACGTCG---GCC---AG---CTCCAGCTCCAGCACTGGTGCAGGTGGCGACTCTTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTGAGTTGA--TCC----CT------CAACCTCAAGGCT-GC---AACTGCGCGAGGCGCAATGTAA-----AGCA-AAC----GAAAATTGGACCC-A--------------------------AA--------------------------CAAAAGAA--------------AACTTT-------C-GA--AACGATTGCCAA----A--------TATTCATTGCGCTAAGGGCAC-GATGGATTT--TTTGGA
droPer2	scaffold_7:2603403-2603660 +		ATGCCACCTCG---GCC---AG---CTCCAGCTCCAGCACTGGTGCAGGTGGCGACTCTTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTGAGTTGA--TCC----CT------CAACCTCAAGGCT-GC---AACTGCGCGAGGCGCAATGTAA-----AGCA-AAC----GAAAATTGGACCC-A--------------------------AA--------------------------CAAAAGAA--------------AACTTT-------C-GA--AACGATTGCCAA----A--------TATTCATTGCGCTAAGGGCAC-GATGGATTT--TTTGGA
droWil2	scf2_1100000004902:5853816-5854059 +		ATGTGACCTCA---ACTCATG------GCGG---------C------GGCGACAACTCCTGCCAAACTGTGAGCCTTGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCCAAATCCAAGCTTTGAGCC----------T-CTCAATATGGCTTCAAAGCT-CA---G-----GCCGGGCGCAATGCAATGCACAAA--AAC---AA-AAA----------------------------------------------------------------CAGAAGAAAGCATATGAAAAT---A----------T-TT----TTTTTTTAAATTTAA--------TTTCCATTGCGCTTTGCGCTT-GATGGATTTTTTTTGGA
droVir3	scaffold_12855:1128680-1128936 +		ACACCACCTCCACGGCT---G------TCAC---------T---------GGCGATGCCTGCCAAACAGTGAGCCTAGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTAGAT-CA--TCC--AA-T------CTATCT-AAAG----C---AACTGCGCGAGGCGCAATGTAA-----AACC-AAT----AACAAATGGATTT-T---------------------TCGCTAAACAACAACCATTTGTTGCATTTATTAAAAAACAA--------------AAACT------------------GTTGCAAA----A------ACATTTCATTGCGCTTGGCGCA----TGGATT---TTTGGA
droMoj3	scaffold_6540:26883166-26883434 +		ACTCCACATCG---GCT---G------CCAC---------TGGCGCGGCAGGCGATGCGTACCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTATAGAT-------CATCA-C------CCATCT-AAAGCAACG---AACTGCGCGAGGCGCAATGTAA-----ACAC-ATC---ATCAAA-TGGAAAC-ATCCATAAAAGCTATCAATTTCT-------------CCATTTGTTGCATTTATTTG--AC------------------------------CATT--AGCAATTGCAAA----A--------ATTTCATTGCGCTTGGCGCG----TGGATT---TTTGGA
droGri2	scaffold_14624:3713265-3713519 +		ATGCGACTTCA---ATCATTGGCGCCTCC------------------TCGGGCGACGCTTGCCAAACTGTGAGCCTCGAATTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTAGGATAA--TC------C------TCAACCTAAAGCT-ACACAAACTGCGCGAGGCGCAATGTAA-----ACAA-CACA--ATCAAA-TGGGCTC-G--------------------------AA-------------------------------CAT--------------AAAATGCAAGCCA--T----TTGGTTGCCAATTTCATTCAAACCAATTCATTGCGCTTGGCGCA----TGGATT---TTTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATGCTACCTCA---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCA---CC------CCATCTCAAAGTT-AT---AAATGCGCGAAGCGCAATGCAA-----CAA--CAC---TG-AAATTGGATTC-T--------------------------AA--------------------------GAAAACAT--------------AAAATG-------C-ATATAGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................TCCATTGCGCTGAGGGCAT-GATGGA...........	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TATAGGCATTGCCAA----A--------ATTCCATT...............................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AC---TG-AAATTGGATTC-T--------------------------AA--------------------------GAAAAC...................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................AAACTGTGAGCCTCGATTTTGCCT..........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................AAACTGTGAGCCTCGATTTTGCCG..........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CGCCAACGCTGCTCCAAA...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATTGCCAA----A--------ATTCCATTGCG............................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......CTCA---GCC---GG---CTCCAG---------TGGAAC...................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GACAATTAGCCGCCAACGCTGCTCCAAA...........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TGCGCTGAGGGCAT-GATGGATT---TTTG..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........CA---GCC---GG---CTCCAG---------TGGAAC...................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATGCTACCTCG---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTTCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TCCA---CC------CCATCTCAAAGTT-AC---AAATGCGCGAAGCGCAATGCAA-----CAA--CAC---TG-AAATTGGATTC-T--------------------------AA--------------------------GAAAACAT--------------AAAATG-------C-ATATAGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........CG---GCC---GG---CTCCAG---------TGGAACAGTGGGC............................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0
.................................................................................................................................................................AAGTT-AC---AAATGCGCGAAGCGCA.....................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..GCTACCTCG---GCC---GG---CTCCAG---------TG.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.........................................................................................TGACAATTAGCCGCCAACG.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................A--------ATTCCATTGCGCTGAGGG.....................	19	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ATTCCATTGCGCTGAGGGC....................	19	1	1.00	1	0	0	1	0
.........CG---GCC---GG---CTCCAG---------TGGAACAGT................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATTGCGCTGAGGGCAT-GATGG............	21	1	1.00	1	0	1	0	0
..........................................................................................GACAATTAGCCGCCAACGCT...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................A--------ATTCCATTGCGCTGAGGGCA...................	21	1	1.00	1	0	1	0	0
..........................................................................CTCGATTTTTCCTCTTGACAATTAGCCGC..........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
............................................................GCCAAACTGTGAGCCTCGATTT...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
..........................TCCAG---------TGGAACAGTGGGCGACTC.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
................................................................................................................................................................................................AA-----CAA--CAC---TG-AAATTGGATTC-T--------------------------AA--------------------------GAA......................................................................................................	27	1	1.00	1	1	0	0	0

dm3

ATGCTACCTCA---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--AGCA---CC------CCATCTCAAAGTT-AC---AAATGCGCGAAGCGCAATGCAA-----CAA--AAC---T-AAAATTGGATTC-T--------------------------AA--------------------------GAAAACAT--------------TAAATG-------C-ATATAGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................AA----A--------ATTCCATTGCGCTGAG.......................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AGTGGGCGACTCCTGCCAAACTGTGAGC.......................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GCTGAGGGCAT-GATGGATT---TTT...	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................TGCCAAACTGTGAGCCTCGA..................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................AC---T-AAAATTGGATTC-T--------------------------AA--------------------------GAA......................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................T--------------------------AA--------------------------GAAAACAT--------------TAAATG-------C-ATATAGG.............................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TCCAAAGTCCAAGCTTTGAGTGGG--.......................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTTTGCCTCTTGACAATTAGCCGC..........................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................AGCTTTGAGTGGG--AGCA---CC------CCATC...................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GCTGAGGGCAT-GATGGATT---......	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GCGCTGAGGGCAT-GATGG............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATGCTACCTCA---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCA---CC------CCAGCTCAAAGTT-AT---AAGTGCGCGAAGCGCAATGCAA-----GAA--AAC---TG-AAATTGGATTC-T--------------------------AA--------------------------CAAAACAT--------------AAAATG-------C-AT--AGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................GTGAGCCTCGATTTTGCCTCT........................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
.................................................................................TTGCCTCTTGACAATTAGCCG...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................ATTGCCAA----A--------ATTCCATTGCGCTGAGGGC....................	28	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................A--------ATTCCATTGCGCTGAGG......................	18	1	1.00	1	0	0	0	0	0	1	0
....................................................................GTGAGCCTCGATTTTGCCT..........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................GCGCTGAGGGCAT-GATGG............	18	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................TGCGCTGAGGGCAT-GATGGATT---T.....	23	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................ATGCAA-----GAA--AAC---TG-AAATTGG.....................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................TGCTCCAAAGTCCAAGCTTTGAGTG...........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0

droYak3

ATGCTACCTCA---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCA---CC------CCATCTCAAAGTT-AT---AAGTGCGCGAAGCGCAATGCAA-----CAA--AAC---TG-AAATTGGATTC-T--------------------------AA--------------------------CAAAACAT--------------AAAATG-------C-AT--AGGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................TGAGCCTCGATTTTGCCTCTTGACAAT.................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..GCTACCTCA---GCC---GG---CTCCAG---------TGGAAC...................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................C---GG---CTCCAG---------TGGAACAGTGGGC............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TGCCAA----A--------ATTCCATTGCGCTGAGGGC....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................GGAACAGTGGGCGACTCCT.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................ACTGTGAGCCTCGATTTTGCCTCTTGACA...................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TGCCAA----A--------ATTCCATTGCGCTGAGG......................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ATGCTACCTCT---GCT---GG---CTCCAG---------TGGAACGGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCTTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGAGGG--TACACAT-C------CCTTCTCAAAGTG-AA---AATTGCGCGAAGCGCAATGCAA-----AATA-CAC-------AATTGGATTC-T--------------------------AAACAA----------------------CAA--------------AAAT-AAAGT----------------GCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGCCACCTCG---GCC---GG---CTCCAG---------CGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TACCCAACC------CCACTTCAAAGTT-GT---AAATGCGCAAAGCGCAATGCAA-----AAAACAAC---AGAAAATTGGATTA-C--------------------------AA--------------------------CAGAAAAG----------AA-TAT-------------A---AAGCATTGCCAA----A--------ACTCCATTGCGCTGAGGGCAT-GGTGGATT---TTTGGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGCCACCGCA---GCCAGTGG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGA--TT-AAAA-C------CCAACTCAAAGTT-AC---AACTGCGCAAGGCGCAATGCAA-----AAAA-AAAATAAGAAAATTGGATTC-A--------------------------A--------------------------------------------AAAT---AAT------------------ATTTCCAA----A--------ATCCCATTGCGCTGAGGGCAT-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGCCACCTCT---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCACAA-C------CCAACTCAAGGCT-AC---AACTGCGCGAAGCGCAATGCAA-----AAAA-AAC---AGAAAATTGGATTCAC--------------------------AA--------------------------AAAAACAA-------------TATAATG-------C-AA--AGGCATTACCAA----A--------GTTCCATTGCGCTGAGGGCAT-TTTGGATT---TTTGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGCTACCTCT---GCT---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TGCACAA-C------CCAACTCAAAGTT-AC---AACTGCGCGAAGCGCAATGAAA-----AAA--AAC---AGAAAATTGGATTC-C--------------------------AA---------------------------AAAACAT-------------TACAATG-------C-TT---TGCATTGCCAA----A--------ATACCATTGCGCTGAGTGCAT-TATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGCCACTGCT---GCC---GG---CTCCAG---------TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTGAATGGGAGTACACAA-C------CC--CTCAAAGTT-AC---AATTGCGCGAAGCGCAATGCAA-----AAAA-AAAAC-TGAAAATTGGATTC-T--------------------------A--------------------------------CAT-----AAAAAAAT---TATG-------C-TT---TGCATTGCCAA----A--------ATTCCATTGCGCTGAGGGCAT-GATGGATA---TTTGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGCCACCTCA---GCT---GG---CACCAGCAACAG---TGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGGG--TCCCAAG-C------CCAACTCAAAGTT-AC---AAATGCGCGAAGCGCAATGCAG-----GAC--ACG---AGAAAATTGGATA------------------------------A--------------------------CAA--------------AAAT---AATGAAAACTAC-TT---TGCATAGCCAA----A--------ATACCATTGCGCTGAGGGCAAAAATGGATTT--TTTGGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACGCCACCTCA---TCC---GG---CTCCAG---------CGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGAG--ATTACCA-C------TCATCTCAAGGCTGAA---AAGTGCGCGAGGCGCAATGCAG-----AAT--ATC---ATTTATTTGGACGC-A--------------------------AATTAA-A----------------ATTAAAAAAAAA--------------AAAATG-------C-TT---TGCATTGTCAA----A--------ATTCCATTGCGCTGAGGGCAC-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................TCCAG---------CGGAACAGTGGGCGACTCC......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........A---TCC---GG---CTCCAG---------CGGAACAGT................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................ACAGTGGGCGACTCCTGCCAAACT.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................AGGCTGAA---AAGTGCGCGAGGC........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
............................CAG---------CGGAACAGTGGGCGACT........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................GGAACAGTGGGCGACTCCTG....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCCATTGCGCTGAGGGCAC-GA...............	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A----A--------ATTCCATTGCGCTGAGGGC....................	21	1	1.00	1	0	0	0	0	1	0

droBip1

AAGTCACCTCA---TCC---GG---CTCCAT---------CGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAGTCCAAGCTTTGAGTGAC--TACC--A-C------TCATCTCAAGGCTGAA---AAGTGCGCGAGGCGCAATGCAG-----AAT--ATC---ATTTGATTGGACAC-A--------------------------CATTAA-A----------------A---TTAA-------------AAA---TAATG-------C-TT---TACATTGTCAA----A--------ATTCCATTGCGCTGAGGGCAC-GATGGATT---TTTGGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATGCCACGTCG---GCC---AG---CTCCAGCTCCAGCACTGGTGCAGGTGGCGACTCTTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTGAGTTGA--TCC----CT------CAACCTCAAGGCT-GC---AACTGCGCGAGGCGCAATGTAA-----AGCA-AAC----GAAAATTGGACCC-A--------------------------AA--------------------------CAAAAGAA--------------AACTTT-------C-GA--AACGATTGCCAA----A--------TATTCATTGCGCTAAGGGCAC-GATGGATTT--TTTGGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................GA--TCC----CT------CAACCTCAAGGCT-GC---AAC..................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................A-AAC----GAAAATTGGACCC-A--------------------------AA--------------------------C........................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................GGCT-GC---AACTGCGCGAGGCGCAAT...................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................ACCTCAAGGCT-GC---AACTGCGC.............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GA--AACGATTGCCAA----A--------TATTCATT...............................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................CTCAAGGCT-GC---AACTGCGCGA...........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................T------CAACCTCAAGGCT-GC---AACT.................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................AAGCTTTGAGTTGA--TCC----CT------CAA.....................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TGAGCCTCGATTTTGCCTCTT.......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................CTTGCCAAACTGTGAGCCTCG...................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TGA--TCC----CT------CAACCTCAAGG.............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................AGCTCCAGCACTGGTGCAGGTGGCGAC.........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................GTAA-----AGCA-AAC----GAAAATTGGACCC-A--------------------------AA--------------------------.........................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................GA--TCC----CT------CAACCTCAAGGC............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.TGCCACGTCG---GCC---AG---CTCCAGCTCCA.............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................GTAA-----AGCA-AAC----GAAAATTGGACCC-................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................CTCTTGCCAAACTGTGAGCC......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................GA--TCC----CT------CAACCTCAAGGCT-G.........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................TCC----CT------CAACCTCAAGGCT-GC---AACT.................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GCGCTAAGGGCAC-GATGGATTT--......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................GTTGA--TCC----CT------CAACCTCAAGGCT-GC---AACT.................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................A--TCC----CT------CAACCTCAAGGCT-GC---AACT.................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATGCCACCTCG---GCC---AG---CTCCAGCTCCAGCACTGGTGCAGGTGGCGACTCTTGCCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTGAGTTGA--TCC----CT------CAACCTCAAGGCT-GC---AACTGCGCGAGGCGCAATGTAA-----AGCA-AAC----GAAAATTGGACCC-A--------------------------AA--------------------------CAAAAGAA--------------AACTTT-------C-GA--AACGATTGCCAA----A--------TATTCATTGCGCTAAGGGCAC-GATGGATTT--TTTGGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................GTAA-----AGCA-AAC----GAAAATTGGACCC-A--------------------------AA--------------------------C........................................................................................................	28	1	2.00	2	2	0	0	0	0	0
....................................................CGACTCTTGCCAAACTGTGAGC.......................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................CAAGGCT-GC---AACTGCGCGAGGCGC......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................GTAA-----AGCA-AAC----GAAAATTGGACCC-................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................GGCT-GC---AACTGCGCGAGGCGC......................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................CAACCTCAAGGCT-GC---AACTG................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................GTAA-----AGCA-AAC----GAAAATTGGACCC-A--------------------------.....................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A----A--------TATTCATTGCGCTAAGG......................	19	1	1.00	1	0	1	0	0	0	0

droWil2

ATGTGACCTCA---ACTCATG------GCGG---------C------GGCGACAACTCCTGCCAAACTGTGAGCCTTGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCCAAATCCAAGCTTTGAGCC----------T-CTCAATATGGCTTCAAAGCT-CA---G-----GCCGGGCGCAATGCAATGCACAAA--AAC---AA-AAA----------------------------------------------------------------CAGAAGAAAGCATATGAAAAT---A----------T-TT----TTTTTTTAAATTTAA--------TTTCCATTGCGCTTTGCGCTT-GATGGATTTTTTTTGGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................TTAAATTTAA--------TTTCCATTGCG............................	21	1	1.00	1	0	0	0	0	1
.........................................................................................................................................................TGGCTTCAAAGCT-CA---G-----GCCGGGCGCAA....................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.....................................................................................................................AATCCAAGCTTTGAGCC----------T-...............................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.........CA---ACTCATG------GCGG---------C------GGCGACAACTCC......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.......................................................................................................CAACGCTGCTCCCAAATCCAAGCTT.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
........TCA---ACTCATG------GCGG---------C------GGCGA.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TGCGCTTTGCGCTT-GATGGATT.........	22	1	1.00	1	0	1	0	0	0
.....................................................................................CTCTTGACAATTAGCCGCCAACGCT...................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...............................................................AAACTGTGAGCCTTGATTTTG.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...........................................................TGCCAAACTGTGAGCCTTGATTTTGCC...........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0

droVir3

ACACCACCTCCACGGCT---G------TCAC---------T---------GGCGATGCCTGCCAAACAGTGAGCCTAGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTAGAT-CA--TCC--AA-T------CTATCT-AAAG----C---AACTGCGCGAGGCGCAATGTAA-----AACC-AAT----AACAAATGGATTT-T---------------------TCGCTAAACAACAACCATTTGTTGCATTTATTAAAAAACAA--------------AAACT------------------GTTGCAAA----A------ACATTTCATTGCGCTTGGCGCA----TGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................ATTT-T---------------------TCGCTAAACAACAACCATTTG.....................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................................................................................................................................................T-AAAG----C---AACTGCGCGAGGCGC......................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................G----C---AACTGCGCGAGGCGCAAT...................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CAACGCTGCTCCAAAATCCAA.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AAATGGATTT-T---------------------TCGCTAAACAACAAAA..........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CTAGATTTTGCCTCTTGAC....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TCCAAGCTTTAGAT-CA--TCC--AA-T------CTATCT-.................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGATTT-T---------------------TCGCTAAACAACAACCATT.......................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGATTT-T---------------------TCGCTAAACAACAACCATTTGT....................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ACAAATGGATTT-T---------------------TCGCTA....................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

ACTCCACATCG---GCT---G------CCAC---------TGGCGCGGCAGGCGATGCGTACCAAACTGTGAGCCTCGATTTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTATAGAT-------CATCA-C------CCATCT-AAAGCAACG---AACTGCGCGAGGCGCAATGTAA-----ACAC-ATC---ATCAAA-TGGAAAC-ATCCATAAAAGCTATCAATTTCT-------------CCATTTGTTGCATTTATTTG--AC------------------------------CATT--AGCAATTGCAAA----A--------ATTTCATTGCGCTTGGCGCG----TGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................ACCAAACTGTGAGCCTCGATTTTGCCT..........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AA----A--------ATTTCATTGCGCTTGGCG.....................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................GCAACG---AACTGCGCGAGGCGCAAT...................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................A--------ATTTCATTGCGCTTGGCGCG----...............	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................T-AAAGCAACG---AACTGCGCGAGGCGC......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................GCAACG---AACTGCGCGAGGCGC......................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................T-AAAGCAACG---AACTGCGCG............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................GCAACG---AACTGCGCGAGGCG.......................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................AACG---AACTGCGCGAGGCGC......................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................GTAA-----ACAC-ATC---ATCAAA-TGG.....................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................ATCAATTTCT-------------CCATTTGTT...................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................TCCATAAAAGCTATCAATTTCT-------------C...........................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................AT-------CATCA-C------CCATCT-AAAG.............................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................AATGTAA-----ACAC-ATC---ATCAAA-TGG.....................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TATTTG--AC------------------------------CATT--AGCAATTG........................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................ATTTG--AC------------------------------CATT--AGCAATTGCAAA----A--------.......................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................CAACG---AACTGCGCGAGGCGCAAT...................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................TTATTTG--AC------------------------------CATT--AGCAATTGC.......................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TATTTG--AC------------------------------CATT--AGCAATTGCA......................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................ATAGAT-------CATCA-C------CCATCT-AAAG.............................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

ATGCGACTTCA---ATCATTGGCGCCTCC------------------TCGGGCGACGCTTGCCAAACTGTGAGCCTCGAATTTGCCTCTTGACAATTAGCCGCCAACGCTGCTCCAAAATCCAAGCTTTAGGATAA--TC------C------TCAACCTAAAGCT-ACACAAACTGCGCGAGGCGCAATGTAA-----ACAA-CACA--ATCAAA-TGGGCTC-G--------------------------AA-------------------------------CAT--------------AAAATGCAAGCCA--T----TTGGTTGCCAATTTCATTCAAACCAATTCATTGCGCTTGGCGCA----TGGATT---TTTGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................GACGCTTGCCAAACTGTGAGCCTCGA..................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0

dsi_8748

3r:24923651-24923800 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.9	-26.9	-26.9