| droSim2 | 
	3r:4863058-4863266 - | 
	dsi_8700 | 
	GCGCCGCACAGATTAGA----------------------------------CATTCGCAGTC-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGA---------CGGTGGC-------GGT------G---GAGGTGGCAGGCCTCGCTTACAAGCTCAGATCTCGGG--------------TTTCC--------------C-TGTCTCC-------G-------------------------------------------A--TTGTGTGAACTAATC----------------------------------------------ATTGCGATCCTTGCAGGAGCACTCCAAGCACTT-CTATCCCGATAACTACAAAT-TGGATCTGTCTGA | 
	| droSec2 | 
	scaffold_27:292371-292567 - | 
	 | 
	GCGCCGCACAGATTAGA----------------------------------CATTCGCAGTC-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGG---------AGGTGGC----------------------------AGGCCTCGCTTACAAGCTCAGATCTCGGG--------------TTTCC--------------C-TGTCTCC-------G-------------------------------------------A--TTGTGTGAACTAATC----------------------------------------------ATTGCGATCCTTGCAGGAGCACTCCAAGCACTT-CTATCCCGATAACTACAAAT-TGGATCTGTCTGA | 
	| dm3 | 
	chr3R:16443775-16443986 + | 
	 | 
	GCGCCGCACAGATTAGA----------------------------------TATTCGCAGTC-CCAGACG-AAAATGAACAATTTGGTAAGTGG--GCG------GTGA---------CGGCGGT----------GGCAGTG---GAGGTAGCAGGGCTCGATTTCAAGCTCAGATCTTGGG--------------TGTCT--------------C-TGTTTCC-------G-------------------------------------------A--TTGTGTGAACTAATC----------------------------------------------ACTGCGATCCTTGCAGGAGCACTCCAAGCATTT-CTATCCTGATAACTACAAAT-TGGATCTGTCTGA | 
	| droEre2 | 
	scaffold_4770:5223637-5223841 - | 
	 | 
	GCGCCACACAGATTAGA----------------------------------CATTCGCAGTC-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGA---------CGGTGGC-------GGTGGCTGT---------------------------GCTCAGAACTCGTG--------------TGTCT--------------A-GGTCTCC-------G-------------------------------------------A--TTGTGATTGCCAGCCAATCAATTA--------------------------------TAACCATTGCGATCCTTGCAGGAGCACTCCAAGCATTT-CTATCCCGATAACTACAAAT-TGGATTTGTCTGA | 
	| droYak3 | 
	3R:5235878-5236082 + | 
	 | 
	GCGCCACACAGGTTAAG----------------------------------CTATTGCAGTC-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGA---------CGGAGT----------------------------------TCGGTTTCAAGCTCAGGTCTCGGG--------------TGTCT--------------C-CACCTTC-------G-------------------------------------------A--TTGTGAATACCAATCAATCAATTA--------------------------------TAACCAGTGAGATCCTTGCAGGAGCACTCCAAGCATTT-CTATCCCGATAACTACAAAT-TGGATCTGTCTGA | 
	| droEug1 | 
	scf7180000409804:2771879-2772069 + | 
	 | 
	GCGACACACATGTTAGA----------------------------------CATCCGCAGTC-GATGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGG---------CGGGG----------------------------------------------------TTTCTGA--------------TGTTG--------------C-AGTCTTC-------A-------------------------------------------A--TTGTGTGTATCAATCAATCAATCAACATATG----TG-T----------------------AAT-CAATCCTTTCAGGAGCACGCTAAGCACTT-CTATCCCGATAATTATAAAT-TGGATCTGTCCGA | 
	| droBia1 | 
	scf7180000302402:9272398-9272590 + | 
	 | 
	GCGTCACTCAGACTAGG----------------------------------AATCCGCAGTC-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGG---------CGGAGGC----------------------------------------------TAGATTTCGGG--------------TGTCT--------------C---------------G-------------------------------------------ACGCTGTGTGTATCAATCAATCAATCAATCCATC----CA-C----------------------ATTGCACTCCTTGCAGGACCACGCCAAGCACTT-CTATCCCGACAACTACAAAT-TGGATCTGTCCGA | 
	| droTak1 | 
	scf7180000415630:298834-299014 + | 
	 | 
	GCGTCGCTCAGATTAGG----------------------------------AGACCGCAGCC-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGG---------CGGTG----------------------------------------------------------G--------------TGTCT--------------C-CGTTTTA-------T-------------------------------------------A--GTGTGTGTATCAATCAATCAATCAACATATC--------------------------------AACAATCCTTGCAGGAGCACGCCAAGCACTT-TTATCCCGACAACTACAAAT-TGGATCTGTCCGA | 
	| droEle1 | 
	scf7180000491080:314309-314514 + | 
	 | 
	GCGCCACACAGATTAGA-G------T-------------------------CATCCGCAGAC-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GCAG---------CGGCGGC-------GGG------GCCGGG---GGCGG-----------------GGGAAGCGGG--------------TGTCC--------------CCCATGTCT-------G-------------------------------------------A--GTGTGTGTATCAATCAATCAACCCAC------------T----------------------ATT-CCATCCTTGCAGGACCACGCCAAGCACTT-CTATCCCGACAACTACAAAT-TGGATCTGTCCGA | 
	| droRho1 | 
	scf7180000778278:119133-119316 + | 
	 | 
	GCGCCACACAGATTAGA-G------A-------------------------CATCCGCAGTC-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGG---------CGGGGG---------------------------------------------------ATTCGGG--------------TGTCC--------------CCCTTGTCT-------G-------------------------------------------A--ATGTGTGTATCAATCAATCAATC--------------------------------------ACT-CAATCCCTGCAGGAGCACGCCAAGCACTT-CTATCCCGACAACTACAAAT-TGGATCTGTCCGA | 
	| droFic1 | 
	scf7180000453930:364936-365139 - | 
	 | 
	GCGCCGCACTGATTAGA----------------------------------AAACCGTAGTT-CCAGACG-AAAATGAACAATTTGGTGAGTGG--GCG------GTGG---------CGGGGGG--------------------------------------------TTCCAGTTCTGGG--------------TGTCT--------------C-CTGGCCC-------G-------------------------------------------A--TTGTGTGTATCAATCAGTCAATCGAACTGACAATTTACT----------------------GTT-CAATCCTTGCAGGAGCACGCAAAGCACTT-TTATCCTGACAACTACAAAT-TGGATCTGTCCGA | 
	| droKik1 | 
	scf7180000302307:336219-336452 - | 
	 | 
	GCGCCGCGGCGATTAGA-T------GCC--GCCAAAGAAGCAGCAGCCAGACGTCCGTAGCC-CCAGCCG-AAAATGAACAATTTGGTGAGTGG--GTG------GCGC---------CGGGGGG-----------------ATGTG----------------------------GATGGGG--------------TGTGTCTGTC--------T---------GTGTCTG-TG----------------GCCCGCGATTCCCAGTGACCGA---AAGTAGTGTGGATTAATC----------------------------------------------GTT-CGCCCGTTACAGGATCACGTCAAGCACTT-CTACCCAGACAACTACAAAT-TGGATCTGTCCGA | 
	| droAna3 | 
	scaffold_13340:13138440-13138652 - | 
	dan_3063 | 
	ACGACTTGCAGTTTAAA-T------GTGTGGCT------------------GATTTACACTT-CCAGCCA-AAGATGAACAATTTGGTAAGTTGAGTGG------GTGG---------CAGGGGG--------------------TG---GGCA------------------------GGGG--------------TGTGTCTGTGTGCCAT-G--CCATGTCT-------GAGTGTGTAATTGTGTG---------------------------T--GTGTGTGTATCAATC----------------------------------------------A-----TTCGTTGCAGGAGCACGTCAAGCACTTTTTACCCCGAAAACTACAAGTTTGGATCTGTCCG- | 
	| droBip1 | 
	scf7180000396691:2015395-2015602 - | 
	 | 
	AAGACTTGCAGATTAAAAT------GTCTGGCT------------------GATTTACACTT-CCAGCCA-AAGATGAACAATTTGGTAAGGCGAGTGG------GTGC---------CAGGGGG--------------------TG---GGCA------------------------GGGG--------------TGTGTCTGTGTGCCAT-G--GAA-----GTGTCTG-AGAGTGTAAAT-----------------------------------GTGTGTATATCAT--------------------------------------------------T-CATTCGTTGCAGGAGCACGTCAAGCACTT-TTACCCCGAAAACTACAAAT-TGGATCTGTCCGA | 
	| dp5 | 
	2:5778331-5778541 + | 
	 | 
	GCGTCCCAGCGAATAGA-T------GCC--GCT------GCAGTAGCCAG---ACAGTAGCCCACAGCCG-AAAATGAACAATTTGGTAAGTGG--GTG------GTAG---------TGGTGGT----------GGCCGT----------------------------------------TTGTGTATGTGTAGGCGTGTCTGTG--------T---------GGG--------GTTTCATGGTGTGCGGCC----------------------------TGTGTATCAA-------------------------------------------------------TTGTTGCAGGAGCACGTCAAGCACTT-CTACCCAGAAAACTATAAAT-TGGATCTTTCGGA | 
	| droPer2 | 
	scaffold_19:1508234-1508444 + | 
	 | 
	GCGTCCCAGCGAATAGA-T------GCC--GCT------GCAGTAGCCAG---ACAGTAGCCCACAGCCG-AAAATGAACAATTTGGTAAGTGG--GTG------GTAG---------TGGTGGT----------GGCCGT----------------------------------------TTGTGTATGTGTAGGCGTGTCTGTG--------T---------GGG--------GTTTCATGGTGTGCGGCC----------------------------TGTGTATCAA-------------------------------------------------------TTGTTGCAGGAGCACGTCAAGCACTT-CTACCCAGAAAACTATAAAT-TGGATCTTTCGGA | 
	| droWil2 | 
	scf2_1100000004921:2443552-2443731 - | 
	 | 
	----------------------------------------------------------------CAGTTG-AAAATGAATAATTTGGTGAGTGG--TGG------GTGG---------CCCT--------------------------------------TCTTGCGACT-----------TTCTATATGGGTGGGCGTGTCTGTG--------T---------GTGTGTG-TGT----------------ATCAAAAGTGCAGGTTATTG-------------------------CAATTG--------------------------------CAACTCTTG---CCATTTCAGGAGCACGTCAAGCACTT-CTATCCCGACAATTACAAGT-TAGATCTCTCGGA | 
	| droVir3 | 
	scaffold_13047:12291177-12291427 - | 
	dvi_16623 | 
	GCGCCAGTCCAAATAGA-TGCAGATGCC--GCT------GCACTTGCA-----ACAGTA--C-ATAGCCGAAAAATGAACAATTTGGTGAGTGT--GGT------GTGTGTATGCGTGCATTGGGTGGGTGAG------------------GTGG------------------------GTGTGTATAGGTGTTGGCGTGCATGTA--------T---------ACGTCTG-TGT----------------ATTGAGACTTAATGTGTTTGTG-------------------------TTTG--------------------TGCGGCTGC-TGAA-------ACCTGATTACAGGAACACGTCAAGCACTT-TTATCCAGAAAACTACAAAT-TGGATCTCTCGGA | 
	| droMoj3 | 
	scaffold_6540:29515814-29516107 + | 
	 | 
	GCGCCATTCCAAATAGA-TGCAGATGCC--GCT------GCACTCGACGC---ACCGTA--C-ATAGCCGAAAAATGAACAATTTGGTGAGTGT--GTGTGCTGTGTGTATATTTGTAGATTGGTTGGGTG---G------GATGTG---GGTGG------------------------GGGTGTATAGGTGTTGGCGTGCATGTATACGATTG-CCCCTGTCT-------GTGT----------------GTGAAAACTAAATGTGATTGTGTTT--GTGTTTGCAT------------T------------TA-CGTTTGTGTGGATACTTGAA-------ACCTGATTGCAGGAGCACGTCAAGCACTT-TTATCCAGAAAATTACAAAT-TGGATCTCTCTGA | 
	| droGri2 | 
	scaffold_14830:870803-870858 + | 
	 | 
	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGGATCACGTAAAACACTT-TTATCCCGAAAACTACAAAT-TGGATTTATCGGA |