ID:

dsi_8663

 Coordinate:

4:171802-171936 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.5 -16.4 -15.9 -15.9

Flybase annnotation

exon [4_168874_172388_-]; CDS [4_168874_172388_-]

No Repeatable elements found

Sense Strand Reads

###########################################################################################################################################################################################################################################
CTTTGAACACACCAGCACGTACCAGCGGGGAGGAATATTTAAACGAAAAGGCAAGTAGCGCAAAAGGACAGGGGTCCTATGAACTGGATACCATTGGTCCAAACAAGAAACAGGAAGTTTTACCTAATATTAGACGTATTCTGGGATCAAAAAATGGTGACATACCACCGGTTTTATTGAAGCAGGTTACTCAGCGACCCATAATTACATTGCGGCAACCTCCCTCTTCACCAAT
****************************************************************....((..((((((..(((.((..((..((((((........(((((.....)))))))).)))..))..))..))).))))))......))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 O001
Testis
 GSM343915
embryo
....GAACACACCAGCACGTACCAGCGG............................................................................................................................................................................................................... 24 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0
.TTTGAACACACCAGCACGTACCAGCGGGG............................................................................................................................................................................................................. 29 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0
................................................................................................................................ATTAGACGTATTCTGGGATCAAAAAATG............................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ATTCTGGGATCAAAAAATGGTGACATAC...................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................ATATTAGACGTATTCTGGGA......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................TTAAACGAAAAGGCAAGTAGCGCAAAA.......................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................TGCGGGGAGGAGTCTTTAAAC............................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
..............................................AAAGGCAAGTAGCGCAAAA.......................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.TTTGAACACACCAGCACGTACCAGCGGG.............................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............AGCCCGTACCAGCTGGGAGCA......................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................AGGACAGGGGTCCTATGAACTGGA................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TTTTATTGAAGCAGGTTACTC........................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............GCACGTACCAGCGGGGA............................................................................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................TTAAACGAAAAGGCAAGTAGC................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.............AGCACGTACCAGCGG............................................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.TTTGAACACACCAGCACGTACCAGCGG............................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................TAATATTAGACGTATTCTGGGATCAAAAAA................................................................................. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCATAATTACATTGCGGC................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.TTTGAACACACCAGCACGTACCAG.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................TTGGTCAAAACAAGAAACAGGAAGT..................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CAGGTTACTCAGCGACCCAT................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
......................................................GTAGCGCAAAAGGACAGGGGTCC.............................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...TGAACACACCAGCACGTACCAGCGGG.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................GTATTCTGGGATCAAAAAATGGT............................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GCAGGTTACTCAGCGACCCATA................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.TTTGAACACACCAGCACGTACCAGCG................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................TACCTAATATTAGACGTATTCTGGGA......................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TACCATTGGTCCAAACAAGAAACAGGAA....................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................TATTTAAACGAAAAGGCAAGTAGCGC.............................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............AGCCCGTACCAGCTGGGA............................................................................................................................................................................................................ 18 2 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................ACTCAGCGACCGATA................................ 15 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
................CCGTACCAGCTGGGAGCAA........................................................................................................................................................................................................ 19 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................TATTTGACGTATTCCGG........................................................................................... 17 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................TGGTCCATACAAGAATCGG.......................................................................................................................... 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
................................................CGGCGAGTAGCGCAAAA.......................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................CGGCGAGTAGCGCAAA........................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAAACTTGTGTGGTCGTGCATGGTCGCCCCTCCTTATAAATTTGCTTTTCCGTTCATCGCGTTTTCCTGTCCCCAGGATACTTGACCTATGGTAACCAGGTTTGTTCTTTGTCCTTCAAAATGGATTATAATCTGCATAAGACCCTAGTTTTTTACCACTGTATGGTGGCCAAAATAACTTCGTCCAATGAGTCGCTGGGTATTAATGTAACGCCGTTGGAGGGAGAAGTGGTTA
*******************************************************************************....((..((((((..(((.((..((..((((((........(((((.....)))))))).)))..))..))..))).))))))......))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
.............TCGGGCATGGTCGACCCTCGT......................................................................................................................................................................................................... 21 3 1 3.00 3 2 0 1 0 0 0 0 0
............................................................................................................................................................................................................AGTGTAACGCAGTTGGAGTGA.......... 21 3 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................................CAGGTTTGTTCTTTGTCCTTC...................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............CTCGGGCATGGTCGACCCTC........................................................................................................................................................................................................... 20 3 4 0.50 2 2 0 0 0 0 0 0 0
............................................................................................................................................................................................TGAGTCGCGGGTTATAAAT............................ 19 3 20 0.35 7 0 0 0 0 7 0 0 0
.......................................................................................................................................................................................................GTCTTAGTGTAACGCAGTTG................ 20 3 6 0.33 2 0 1 0 0 0 1 0 0
............................................................................................................................................................................................TGAGTCGCGGGTTATCAAT............................ 19 3 10 0.20 2 0 0 0 0 2 0 0 0
..............................................................................................................................................................................................................TGTAACGCAGTTGTAGGGAA......... 20 3 5 0.20 1 0 1 0 0 0 0 0 0
....................................................................................................................................CTTCATAAGATCGTAGTTTT................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................GAGTCGCGGGTTATAAATG........................... 19 3 15 0.07 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................AGTGTAACGCAGTTGGAGT............ 19 3 18 0.06 1 0 0 0 0 1 0 0 0
..............................................TTTCCGTTCTTAGCGTTT........................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:171752-171986 - dsi_8663 CTTTGAACACACCAGCACGT------ACCAGCGGGGAGGAATAT----TTAAACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGAC------AG-------------GGGTCCTATGAACTGG---------ATACCATTGGTC------CAAACAAGAAACAGGAAGTTTTACCTAATATTAGACGTATTCTGGGATCAA------AAAATGGTGACATACCACCGGTTTTATTGAAGCAGGTTACTCAGCGACCCA---TAATTACATTGCGGCAACCTCCCTCTTCACCAAT
droSec2 scaffold_52:169145-169379 - CTTTGAACACACCAGCACGT------ACCAGCGGGGAGGAATAT----TTAAACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGAC------AG-------------GGGTCCTATGAACTGG---------ATAGCATTGGTC------CAAACAAGAAACAGGAAGTTTTACCTAATATTAGACGTATTCTGGGATCAA------AAAATGGTGACATACCACCGGTTTTATTGAAGCAGGTAACTCAGCGACCCA---TAATTACATTGCGGCAACCTCCCTCTTCACCAAT
dm3 chr4:221373-221607 - CTTTGAATACACCAGCACGT------GCCAGCGGAGAGGAATAT----TTATACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGTC------AG-------------GGATCCTATGAAGTGG---------ATGCCATTGGTC------CAAACAAAAGACAGGAAGTTTTACCTAATATTAGACGTATTCTGGGATCAA------AAAATGGTGACATACCAGCGGTTTTATTGAAGCACGTAACTCAGCGACCCA---TAATTACATTGCGGCAACCTCCCTCTTCCCCAAT
droEre2 scaffold_4512:1102624-1102864 + CTTTAAATACACCAGCACGT------ACCAACGGAGAGGATCTT----TTAAACGAAAA---GGCAAATA------GC-------------------------GCAA----------AA---GGAC------AG-------------GGGTTCTATGAACCGG---------ATGTCATTGGTC------CAAATAAAAGACAGGAAGTTTTACCAAACATTAGGCGGATTTTGGGATCAAACGGAAAGAACGGTGACATACCAGCGGTTTTGTTGAAGCAGGTAACACAGCGACCCA---TAATTACAATGCGGCACCCTCCCTCTTCCCCAAT
droYak3 4:201509-201749 - CTTTAAATACACCAGCACGA------ACTAGTGGAGAAGAATTT----TTAAACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGAC------AG-------------GAGTCCTATGAACCGG---------ATGCCATTGGTC------CAAATAAAAGACAGGAAGTTTTACCTAACATTAGACGTATTCTGGGATCAAACGGAATGAATGGCGACATACCAGAGGTTTTGTTGAAGCAGGTAACTCAGCGACCCA---TCATTACAATGCGGCACCCTCCCTCTTCCCCAAT
droEug1 scf7180000406964:153100-153325 - CACTAAATACCCCTGCACGT------GCCAGTGGTGAAGACTTT----TTAAACGAAAA---AACAACAA------GC-------------------------AGTG----------AG---GGAC------TG-------------ATGTCTCATGA------------------------AC------CAATTAAAAGACAGGAAGTCTTACCAAATATAAGACGCATTCTGGGATCGAATGGAAAAAATGGTGATATACCAGCAGTGCTGTTGAAGCAGGTAACTCAGCGACCTA---TAATTAGCTTCCGACATCCACCATCTTCTCCAGT
droBia1 scf7180000302087:99184-99424 + CTCTCAATACACCGGCACGT------GCCAGCGGCGAAGACGTA----TTAAACGAAAA---GGCAAACA------GG-------------------------GTAA----------AG---GGAC------AC-------------GGCTCTCTTGAACCAG---------ATGCCAATGATC------CTAGTAAGAGACAAGAAGTTTTACCCAATATAAGACGTATTCTGGGATCAAATGGAAAGAACAGTGATATACCAGCTGTGTTGTTAAAGCAAGTTACTCAGCGACCCC---AAATAAACATGCGCCAACCGCCGTCTTCGCCAGT
droTak1 scf7180000414501:21822-22062 - CTCTCAATACACCTGCGCGT------AGCAGCGGCGAGGATTTC----TTAAATGAAAA---GATAAGCA------GC-------------------------ATAA----------AG---GGAC------AG-------------GGGTCTCATGAACCAG---------ATGCCAATGATC------CAGTTAAAAGACAAGAAGTTTTACCTAATATAAGACGTATTCTGGGATCGAACGGAAAGAATGGTGACATACCAGCGGTTTTGTTAAAGCAAGTAACTCAGCGACCCA---TAACTGGCATCCGACACCCGCCTTCTTCCCCAAT
droEle1 scf7180000491238:1270251-1270491 + CTCTCAATACACCGGCACGT------ACAAGCAGTGACGACTTT----TTAAGCGAAAA---GACAGCCA------GT-------------------------GCAA----------AG---GGAC------AG-------------GGGCCACATCCCCAGG---------ATGCCACTGATC------CCATTAAGAGACAGGAAGTTTTACCTAATATAAGACGAATTCTGGGATCAAATGGAAAGAACGGTGACATACCAGCTGTGCTATTAAAGCAGGTTACTCAGCGACCCA---TAATGAGCATGCGACATCCGCCCTCTTCTCCAAT
droRho1 scf7180000779182:47218-47452 + CTCTCAATACACCGGCACGT------ACCACCAGTGACAACTTT----TTAAATGAAAA---GACAGCAA------TC-------------------------GCAA----------AG----------------------------GGGCCCCATGAACCGG---------ATGTCACTGATC------CCATTAAAAGACAGGAAGTTTTACCAAATATAAGACGTATTCTGGGATCGAATGGAAAGAACGGGGACATACCTGCTGTGTTGTTAAAGCAGGTAACTCAGCGACCCA---TAATTAGCGTGCGACATCCGCCCTCTTCACCAAT
droFic1 scf7180000454086:146528-146771 - CTCTTAATACACCAGCACGT------GCCAGCAGTGAAGACTTT----ATAAACGAAAA---GACATCCA------AC-------------------------GGAA----------AGGGGGGCC------TA-------------GGGTCTCAAGAACCGG---------GTGTCACTGAAT------CCATCAAACGACAGGAAGTTCTACCCAATATAAGGCGCATTTTGGGCTCGAATGGAAAGAATAGCGACATACCAGCTGTGCTGTTAAAGCAAGTAACCCAGCGACCCC---TTGTAACCATGCGGCAACCACCATCTTCCCCCAT
droKik1 scf7180000301925:20185-20440 + CCTTGAATACGCCAGCGCGT------CCCCACG---AGGAGTAT----TTGAATGAAAAAAAGTCAGCTA------GCACT----------------------GCGA----------AA----------------------------AATTCCCAAGAACAGGATCAGATAGGTGACCATGATCCCATAATTAAGAAAAGTCAGGAAGTCTTGCCCAATATACGTAGGATTCTGGGCTCCAACGGTAAAAATGGTGATATTCCAGCTGTTCTTCTAAAGCAAGTGACTCAAAGGCCTAATATCATAAGCATACGAAATCCGCCTTCATCACCTAT
droAna3 scaffold_13034:603301-603541 - ATCTTAATACACCAGCACGT------GCAAGCAGTGAAGAATTG----GTAAATCAAAA---GGTTCTTA------AT-------------------------ACAA----------GG---GGAT------CA-------------GAGTCCCAAAAGCAAG---------ATTCTCTGAACC------CTATTAAAAAGCAGGAAGTTTTGCCAAATATAAAACGTATTCTTGGATCAAATGGAAATAATGGGGATATACCTGCGGTTTTGTTAAAGCAAGTAACGCAGCGTCCCA---ATCCAAGCATTCGTCAACCGCCATCTTCTCCAAT
droBip1 scf7180000396370:26108-26345 - ACCTTAATACACCAGCACGC------GCAAGCAGTGAACAATTG----TTAAATCAAAC---GGT---TA------AG-------------------------TCAA----------GG---GGAC------CA-------------GAGTCCCAATTACAAG---------ATACTCTTGATC------CTATTAAAAAGCAGGAAGTTTTGCCTAACATAAGGCGTATTCTAGGATCAACTGGAAACAATGGGGATATACCTGCGGTTCTGTTAAAACAAGTAACCCAGCGACCCA---TTCTAAGCGTTCGTCAGCCACCATCTTCTCCAAA
dp5 Unknown_group_398:9178-9421 + CTCTTAATACACCGGCCCGCCAGCCCGCCAGCAACGAAGATTAT----TTGAGTGAACA---GAT---TG------GT-------------------------TCAA----------AG---AGAC------AA-------------GGTGCACAGAACGTGG---------ATTACAGTGGCC------CTAATAAGAAGCAGGAGGTGCTGCCAAATATAAGACGCATTCTCGGATCAAATGGTAAAAAAAGTGACATTCCAGCAGTTCTATTGAAGCAGGTAACTCCGAGACCGG---TCACCAGCATCCATCACCCACCGTCCTCTCCAAT
droPer2 scaffold_42:57322-57565 + CTCTTAATACACCGGCCCGCCAGCCCGCCAGCAACGAAGATTAT----TTGAGTGAACA---GAT---TG------GT-------------------------TCAA----------AG---AGAC------AA-------------GGTGCACAGAACGTGG---------ATTACAGTGGCC------CTAATAAGAAGCAGGAGGTGCTGCCAAATATAAGACGCATTCTCGGATCAAATGGTAAAAAAAGTGACATTCCAGCAGTTCTATTGAAGCAGGTAACTCCGAGACCGG---TCACCAGCATCCATCACCCACCGTCCTCTCCAAT
droWil2 scf2_1100000004943:1154643-1154892 - CGCTTAATACACCTGCCCGCCCATCA--------------TCTC----CATATG----------------GAAATGATGACTATGCTAACAGCAGCAGCGAGCAACAGCGAACCCACCT---TTCCGG---CAA-------------GGATCC--------------------TGGCAAGGATA------CGAAGAAACGACAGGAAGTGTTACCTAACATACGCCGCATCCTGGGCTCAAATGGCAA---GGGCGACATCCCAGCAGTATTATTAAAGCAGGTTACTCAACGTCCGC---TTACTAACTATCACCATCCACCATCATCCCCCAT
droVir3 scaffold_13052:1434604-1434871 + CACTTAATACACCGTCACGG------CCGGGCAATGATGCAGTCGCCGTTGAAGCATCC---GAT----CATAATAATAATGCCAATTATCATAA-----CGTGCAA----------GA---TAAAGGAGTGACCAATAATGGCAAGGAGTCC---------------------------AATG------CAAATAAGAGGCAGGAGGTTCTGCCGAACATTAGACGCATACTAGGATCAAATGGCAAGAAAGGTGACATACCTGCAGTTCTATTGCGCCACGTGACACAGCGACCCT---TGGTGAACTACCATCAGCCGCCAGCCTCCCCGAT
droMoj3 scaffold_6498:395432-395687 + CACTTAATACACCGGCACGC------AATGGAAATGATGCCGGTGCAGTTGAATCATCA---GAT----C------CTAATGCTAAAAATCGTAA-----AACACAA----------GA---TGTC------GG-------------GATTTCTAATAGCAAA---------G-----AAAATT------CAAATAAAAGGCAAGAAGTATTGCCGAATATCAGACGCATACTGGGATCAAATGGTAAGAAAGGTGACATTCCTGCAGTTTTGTTGCGCCATGTGACACAGCGTCCTA---TGGTCCCCTATCATCAGCCTCCAGCATCGCCGAT
droGri2 scaffold_14822:454708-454963 + CGCTAAATACGCCTTCGCGC------AATG------AGGCCACCACAATGGAGGCCAGC---GAA----AGAGATACTAGTAATAATAATAATAACAATGAGCAAAA--------------------------G-------------TTGTCGATGGAGGCGA---------GCAACAAGGAGG------CAAACAAGCGACAGGAAGTGTTGCCAAATATACGCCGTATTTTGGGTTCTAATGGCAAAAAGGGCGATATACCCGCCGTATTGTTGAGGCAAGTGACGCAAAAGCCCAA--TAAT---TATGC-ACAGGCGCCGGCAGCGCCAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTTGAACACACCAGCACGT------ACCAGCGGGGAGGAATAT----TTAAACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGAC------AG-------------GGGTCCTATGAACTGG---------ATACCATTGGTC------CAAACAAGAAACAGGAAGTTTTACCTAATATTAGACGTATTCTGGGATCAA------AAAATGGTGACATACCACCGGTTTTATTGAAGCAGGTTACTCAGCGACCCA---TAATTACATTGCGGCAACCTCCCTCTTCACCAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....GAACACACCAGCACGT------ACCAGCGG.............................................................................................................................................................................................................................................................................................................2412.00201010000000000000
.TTTGAACACACCAGCACGT------ACCAGCGGGG...........................................................................................................................................................................................................................................................................................................2912.00200000011000000000
...........................................................................................................................................................................................................................ATTAGACGTATTCTGGGATCAA------AAAATG..................................................................................2811.00100010000000000000
....................................................................................................................................................................................................................................ATTCTGGGATCAA------AAAATGGTGACATAC.........................................................................2811.00100000000001000000
.........................................................................................................................................................................................................................ATATTAGACGTATTCTGGGA..................................................................................................2011.00100010000000000000
................................................TTAAACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---.....................................................................................................................................................................................................................2711.00100000001000000000
........................................................AAA---GGCAAGTA------GC-------------------------GCAA----------AA---.....................................................................................................................................................................................................................1911.00100000000001000000
.TTTGAACACACCAGCACGT------ACCAGCGGG............................................................................................................................................................................................................................................................................................................2811.00100000001000000000
......................................................................................................................A---GGAC------AG-------------GGGTCCTATGAACTGG---------A..................................................................................................................................................................2411.00100000000010000000
............................................................................................................................................................................................................................................................................TTTTATTGAAGCAGGTTACTC..............................................2111.00101000000000000000
..............GCACGT------ACCAGCGGGGA..........................................................................................................................................................................................................................................................................................................1711.00100000001000000000
................................................TTAAACGAAAA---GGCAAGTA------GC-------------------------........................................................................................................................................................................................................................................2111.00100100000000000000
.............AGCACGT------ACCAGCGG.............................................................................................................................................................................................................................................................................................................1511.00100000001000000000
.TTTGAACACACCAGCACGT------ACCAGCGG.............................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.......................................................................................................................................................................................................................TAATATTAGACGTATTCTGGGATCAA------AAAA....................................................................................3011.00100000000100000000
.......................................................................................................................................................................................................................................................................................................CCA---TAATTACATTGCGGC...................1811.00100000000001000000
.TTTGAACACACCAGCACGT------ACCAG................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.......................................................................................................................................................................................................................................................................................CAGGTTACTCAGCGACCCA---T.................................2011.00100001000000000000
...................................................................GTA------GC-------------------------GCAA----------AA---GGAC------AG-------------GGGTCC......................................................................................................................................................................................2311.00110000000000000000
...TGAACACACCAGCACGT------ACCAGCGGG............................................................................................................................................................................................................................................................................................................2611.00101000000000000000
..................................................................................................................................................................................................................................GTATTCTGGGATCAA------AAAATGGT................................................................................2311.00100010000000000000
......................................................................................................................................................................................................................................................................................GCAGGTTACTCAGCGACCCA---TA................................2211.00100010000000000000
.TTTGAACACACCAGCACGT------ACCAGCG..............................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...................................................................................................................................................................................................................TACCTAATATTAGACGTATTCTGGGA..................................................................................................2611.00100000000010000000
.............................................................................................................................................................................TACCATTGGTC------CAAACAAGAAACAGGAA................................................................................................................................2811.00100000000100000000
.........................................TAT----TTAAACGAAAA---GGCAAGTA------GC-------------------------GC......................................................................................................................................................................................................................................2611.00100000000001000000
droSec2
CTTTGAACACACCAGCACGT------ACCAGCGGGGAGGAATAT----TTAAACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGAC------AG-------------GGGTCCTATGAACTGG---------ATAGCATTGGTC------CAAACAAGAAACAGGAAGTTTTACCTAATATTAGACGTATTCTGGGATCAA------AAAATGGTGACATACCACCGGTTTTATTGAAGCAGGTAACTCAGCGACCCA---TAATTACATTGCGGCAACCTCCCTCTTCACCAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....GAACACACCAGCACGT------ACCAGC...............................................................................................................................................................................................................................................................................................................2211.0011000
..........................................................................................................................................................................................................................TATTAGACGTATTCTGGGATC................................................................................................2111.0010001
...................................................................................................................................................................................................AAGAAACAGGAAGTTTTACC........................................................................................................................2011.0010001
......................................................................................................................................................................................................................................................................................................................TGCGGCAACCTCCCTCTTCA.....2011.0011000
........................................................AAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGAC------A..........................................................................................................................................................................................................2411.0010010
dm3
CTTTGAATACACCAGCACGT------GCCAGCGGAGAGGAATAT----TTATACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGTC------AG-------------GGATCCTATGAAGTGG---------ATGCCATTGGTC------CAAACAAAAGACAGGAAGTTTTACCTAATATTAGACGTATTCTGGGATCAA------AAAATGGTGACATACCAGCGGTTTTATTGAAGCACGTAACTCAGCGACCCA---TAATTACATTGCGGCAACCTCCCTCTTCCCCAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.............................................................................................................................................................................................................................................................................TTTATTGAAGCACGTAACTCAGC...........................................2311.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CAA----------AA---GGTC------AG-------------GGATCCTATGAA................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TGGTC------CAAACAAAAGACAGGAAGGG.............................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................AA---GGCAAGTA------GC-------------------------GCAA----------AA---GGTC------...........................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................A---GGTC------AG-------------GGATCCTATGAAGTGG---------ATG................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TACACCAGCACGT------GCCAGCGG.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................GCCAGCGGAGAGGAATAT----...............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................CTATGAAGTGG---------ATGCCATTGG.........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AAGACAGGAAGTTTTACCT.......................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........ACACCAGCACGT------GCCAGCGGAGAGGAAT.....................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................AA------AAAATGGTGACATACCAGCGGT..................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCAGCACGT------GCCAGCGGAGA..........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...........................................................................................................................................................................................................................................................TGGTGACATACCAGCGGTT.................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GTATTCTGGGATCAA------AAAATG..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ATTGAAGCACGTAACTCAGCGACC.......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TTAGACGTATTCTGGGATCAA------........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AAAAGACAGGAAGTTTTACCTAAT....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TATACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---G....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GAGGAATAT----TTATACGAAAA---G................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AA---GGTC------AG-------------GGATCCTATGAAGTGG---------A..................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CAAGTA------GC-------------------------GCAA----------AA---GGTC------AG-------------GGATCC......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................GT------GCCAGCGGAGAGGAATAT----...............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................AAAGACAGGAAGTTTTACCTAATA...................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTATTGAAGCACGTAACTCAGCGAC........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..TTGAATACACCAGCACGT------GCCAGCGGA............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GTC------AG-------------GGATCCTATGAAGTG.............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............GCACGT------GCCAGCGGAGAGG........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CAGCGGTTTTATTGAAGCAC.....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AAGCACGTAACTCAGCGACCCA---..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TACACCAGCACGT------GCCAGCGGA............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................GCAA----------AA---GGTC------AG-------------GGATCCTATGAAGT..............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................CAA----------AA---GGTC------AG-------------GGATCCTATGAAGTG.............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCAGCACGT------GCCAGCGGA............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TATTCTGGGATCAA------AAAATGGTGA..............................................................................2411.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................ATTAGACGTATTCTGGGATC................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................A----------AA---GGTC------AG-------------GGATCCTATGAAGTGG---------...................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TCTGGGATCAA------AAAATGGTGACATACC........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................AGTA------GC-------------------------GCAA----------AA---GGTC------AG-------------G...........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TCCTATGAAGTGG---------ATGCCATTGGTT------.................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TTAGACGTATTCTGGGATCAA------AAAAAT..................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TA------GC-------------------------GCAA----------AA---GGTC------AG-------------GGATCCTATG..................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................T----TTATACGAAAA---GGCAAGTA------G..................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GCGGTTTTATTGAAGCACG....................................................1911.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAGCACGT------GCCAGCGGAGAGG........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..................................................................................................................................................................................................................................................................................TGAAGCACGTAACTCAGCGACC.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ATACCAGCGGTTTTATTGAAG........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................................................................................................................................................TACATTGCGGCAACCTCCCTCTTCCC....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................GGTTTTATTGAAGCACGTAACT...............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................TGGTC------CAAACAAAAGACAGGAAGTTTT...........................................................................................................................2711.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TACCTAATATTAGACGTATTCTGGGA..................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................ACCAGCGGTTTTATTGAAGCAC.....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GGAGAGGAATAT----TTATACGAAAA---GGCAAGT..........................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................AA---GGCAAGTA------GC-------------------------GCAA----------AA---GGTC------AG-------------GG..........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................ATCCTATGAAGTGG---------ATGCCATTGGTC------.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................GATCCTATGAAGTGG---------ATGCCATTGGTC------.................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................T----TTATACGAAAA---GGCAAGT..........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TAATTACATTGCGGCAACCTCCCTCT........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CCAGCGGTTTTATTGAAGCACGTAAC................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTTTAAATACACCAGCACGT------ACCAACGGAGAGGATCTT----TTAAACGAAAA---GGCAAATA------GC-------------------------GCAA----------AA---GGAC------AG-------------GGGTTCTATGAACCGG---------ATGTCATTGGTC------CAAATAAAAGACAGGAAGTTTTACCAAACATTAGGCGGATTTTGGGATCAAACGGAAAGAACGGTGACATACCAGCGGTTTTGTTGAAGCAGGTAACACAGCGACCCA---TAATTACAATGCGGCACCCTCCCTCTTCCCCAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................TGGGATCAAACGGAAAGAACGGTGACA............................................................................2712.0022000000
............................................................................................................................................................................................................................................ATCAAACGGAAAGAACGGTGA..............................................................................2111.0011000000
...................................................................ATA------GC-------------------------GCAA----------AA---GGAC------AG-------------GGGTT.......................................................................................................................................................................................2211.0010000100
............................................................................................................................................................................................................................TTAGGCGGATTTTGGGATC................................................................................................1911.0010000010
.....................................................................................................................................................GTTCTATGAACCGG---------ATGTCATTGGTC------.................................................................................................................................................2611.0010100000
.........................................................AA---GGCAAATA------GC-------------------------GCAA----------AA---GGAC------AG-------------G...........................................................................................................................................................................................2511.0011000000
...........................................................................................................................................................................................................................................GATCAAACGGAAAGAACGGT................................................................................2011.0010000100
..........ACCAGCACGT------ACCAACGGAGA..........................................................................................................................................................................................................................................................................................................2111.0011000000
........................................................................................................................................................................................................................AACATTAGGCGGATTTTGG....................................................................................................1911.0011000000
..................GT------ACCAACGGAGAGGATCTT----...............................................................................................................................................................................................................................................................................................2011.0010000100
.........................................................AA---GGCAAATA------GC-------------------------GCAA----------AA---GGA..................................................................................................................................................................................................................2111.0011000000
................................................................................................................................................................................................................TTTTACCAAACATTAGGCGGAT.........................................................................................................2211.0011000000
................................................................................................................................................................................................................................................................................GTTGAAGCAGGTAACACAGCGACCC......................................2511.0010000100
.................................................................................................................................................................................ATTGGTC------CAAATAAAAGA......................................................................................................................................1811.0010000010
.....................................................................................................................................................GTTCTATGAACCGG---------ATGTC..............................................................................................................................................................1911.0010010000
.......................................................................................................................................................................................C------CAAATAAAAGACAGGAAGTTTTACCA.......................................................................................................................2711.0010000100
....................................................................................................................................................................................................................................ATTTTGGGATCAAACGGAAAG......................................................................................2111.0010000100
.......................................................................................................................................................................................................GACAGGAAGTTTTACCAAA.....................................................................................................................1911.0010000100
................................................................................................................................................................................CATTGGTC------CAAATAAAAGACAGGAAGT..............................................................................................................................2711.0010000010
droYak3
CTTTAAATACACCAGCACGA------ACTAGTGGAGAAGAATTT----TTAAACGAAAA---GGCAAGTA------GC-------------------------GCAA----------AA---GGAC------AG-------------GAGTCCTATGAACCGG---------ATGCCATTGGTC------CAAATAAAAGACAGGAAGTTTTACCTAACATTAGACGTATTCTGGGATCAAACGGAATGAATGGCGACATACCAGAGGTTTTGTTGAAGCAGGTAACTCAGCGACCCA---TCATTACAATGCGGCACCCTCCCTCTTCCCCAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................TCAGCGACCCA---TCATTACAATGCGGC...................2611.00101000000000
.....................................................................................................................................G-------------GAGTCCTATGAACCGG---------ATGC...............................................................................................................................................................2111.00101000000000
.....................................................................................................................................................GTCCTATGAACCGG---------ATGCCATTGGTC------.................................................................................................................................................2611.00100000010000
..................................................................................................................................................................................................................................................................ATACCAGAGGTTTTGTTGAAGC.......................................................2211.00100100000000
...........................................................................................................................................................................................................................................GATCAAACGGAATGAATGGCGAC.............................................................................2311.00100000010000
............................................................................................................................................................................................................................................ATCAAACGGAATGAATGGCGACATACCA.......................................................................2811.00101000000000
........................................................................................................................................................CTATGAACCGG---------ATGCCATTGGT........................................................................................................................................................2211.00101000000000
.............AGCACGA------ACTAGTGGAGAAGA.......................................................................................................................................................................................................................................................................................................2111.00100100000000
.........................................................................................................................................................TATGAACCGG---------ATGCCATTGGTC------.................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................TTTGTTGAAGCAGGTAACTC..............................................2011.00100000010000
...............................................................................................................................................................................................................................GACGTATTCTGGGATCAAACGGA.........................................................................................2311.00101000000000
..............................................................................................................................................................................................................................................................................TTGTTGAAGCAGGTAACTC..............................................1911.00100100000000
.............................................................................................................................................................................................................................................................................TTTGTTGAAGCAGGTAACTCAGC...........................................2311.00100100000000
..........................................TT----TTAAACGAAAA---GGCAAGTA------...................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................GACATACCAGAGGTTTTGT.............................................................1911.00101000000000
...................................................................................................................................................................................................................TACCTAACATTAGACGTATTCTGGGATC................................................................................................2811.00100000010000
.................................................................AAGTA------GC-------------------------GCAA----------AA---GGAC------AG-------------GA..........................................................................................................................................................................................2111.00100000010000
....AAATACACCAGCACGA------ACTAGT...............................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................................................................................................................................................CATTACAATGCGGCACCCTCCCTCTTCCC....2911.00100000010000
.......................................................................................................................................................................................................................................CTGGGATCAAACGGAATGAATG..................................................................................2211.00101000000000
droEug1
CACTAAATACCCCTGCACGT------GCCAGTGGTGAAGACTTT----TTAAACGAAAA---AACAACAA------GC-------------------------AGTG----------AG---GGAC------TG-------------ATGTCTCATGA------------------------AC------CAATTAAAAGACAGGAAGTCTTACCAAATATAAGACGCATTCTGGGATCGAATGGAAAAAATGGTGATATACCAGCAGTGCTGTTGAAGCAGGTAACTCAGCGACCTA---TAATTAGCTTCCGACATCCACCATCTTCTCCAGTSizeHit CountTotal NormTotal
No Reads
droBia1
CTCTCAATACACCGGCACGT------GCCAGCGGCGAAGACGTA----TTAAACGAAAA---GGCAAACA------GG-------------------------GTAA----------AG---GGAC------AC-------------GGCTCTCTTGAACCAG---------ATGCCAATGATC------CTAGTAAGAGACAAGAAGTTTTACCCAATATAAGACGTATTCTGGGATCAAATGGAAAGAACAGTGATATACCAGCTGTGTTGTTAAAGCAAGTTACTCAGCGACCCC---AAATAAACATGCGCCAACCGCCGTCTTCGCCAGTSizeHit CountTotal NormTotal
No Reads
droTak1
CTCTCAATACACCTGCGCGT------AGCAGCGGCGAGGATTTC----TTAAATGAAAA---GATAAGCA------GC-------------------------ATAA----------AG---GGAC------AG-------------GGGTCTCATGAACCAG---------ATGCCAATGATC------CAGTTAAAAGACAAGAAGTTTTACCTAATATAAGACGTATTCTGGGATCGAACGGAAAGAATGGTGACATACCAGCGGTTTTGTTAAAGCAAGTAACTCAGCGACCCA---TAACTGGCATCCGACACCCGCCTTCTTCCCCAATSizeHit CountTotal NormTotal
No Reads
droEle1
CTCTCAATACACCGGCACGT------ACAAGCAGTGACGACTTT----TTAAGCGAAAA---GACAGCCA------GT-------------------------GCAA----------AG---GGAC------AG-------------GGGCCACATCCCCAGG---------ATGCCACTGATC------CCATTAAGAGACAGGAAGTTTTACCTAATATAAGACGAATTCTGGGATCAAATGGAAAGAACGGTGACATACCAGCTGTGCTATTAAAGCAGGTTACTCAGCGACCCA---TAATGAGCATGCGACATCCGCCCTCTTCTCCAATSizeHit CountTotal NormTotal
No Reads
droRho1
CTCTCAATACACCGGCACGT------ACCACCAGTGACAACTTT----TTAAATGAAAA---GACAGCAA------TC-------------------------GCAA----------AG----------------------------GGGCCCCATGAACCGG---------ATGTCACTGATC------CCATTAAAAGACAGGAAGTTTTACCAAATATAAGACGTATTCTGGGATCGAATGGAAAGAACGGGGACATACCTGCTGTGTTGTTAAAGCAGGTAACTCAGCGACCCA---TAATTAGCGTGCGACATCCGCCCTCTTCACCAATSizeHit CountTotal NormTotal
No Reads
droFic1
CTCTTAATACACCAGCACGT------GCCAGCAGTGAAGACTTT----ATAAACGAAAA---GACATCCA------AC-------------------------GGAA----------AGGGGGGCC------TA-------------GGGTCTCAAGAACCGG---------GTGTCACTGAAT------CCATCAAACGACAGGAAGTTCTACCCAATATAAGGCGCATTTTGGGCTCGAATGGAAAGAATAGCGACATACCAGCTGTGCTGTTAAAGCAAGTAACCCAGCGACCCC---TTGTAACCATGCGGCAACCACCATCTTCCCCCATSizeHit CountTotal NormTotal
No Reads
droKik1
CCTTGAATACGCCAGCGCGT------CCCCACG---AGGAGTAT----TTGAATGAAAAAAAGTCAGCTA------GCACT----------------------GCGA----------AA----------------------------AATTCCCAAGAACAGGATCAGATAGGTGACCATGATCCCATAATTAAGAAAAGTCAGGAAGTCTTGCCCAATATACGTAGGATTCTGGGCTCCAACGGTAAAAATGGTGATATTCCAGCTGTTCTTCTAAAGCAAGTGACTCAAAGGCCTAATATCATAAGCATACGAAATCCGCCTTCATCACCTATSizeHit CountTotal NormTotal
No Reads
droAna3
ATCTTAATACACCAGCACGT------GCAAGCAGTGAAGAATTG----GTAAATCAAAA---GGTTCTTA------AT-------------------------ACAA----------GG---GGAT------CA-------------GAGTCCCAAAAGCAAG---------ATTCTCTGAACC------CTATTAAAAAGCAGGAAGTTTTGCCAAATATAAAACGTATTCTTGGATCAAATGGAAATAATGGGGATATACCTGCGGTTTTGTTAAAGCAAGTAACGCAGCGTCCCA---ATCCAAGCATTCGTCAACCGCCATCTTCTCCAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................TTA------AT-------------------------ACAA----------GG---GGAT------CA-------------GA..........................................................................................................................................................................................1912.002000020
.....................................................................................................................................................GTCCCAAAAGCAAG---------ATTCTCT............................................................................................................................................................2112.002110000
.....................................................................................................................................................GTCCCAAAAGCAAG---------ATTCTCTGAACC------C................................................................................................................................................2711.001010000
......................................................................................................................................................................................................................................................................................................................TTCGTCAACCGCCATCTTCTCC...2211.001010000
.............................................................................................................................................................................................................................................................................................ACGCAGCGTCCCA---ATCCAAGC..........................2111.001010000
........................................................................................................................................................................................................................................................................................................................CGTCAACCGCCATCTTCTCC...2011.001010000
...................................................................................................................................................................................................................................................GGAAATAATGGGGATATACC........................................................................2011.001000100
...........................................................................................................................................................................................................................ATAAAACGTATTCTTGGATCA...............................................................................................2111.001100000
..............................................................................................................................................................................................................................................CAAATGGAAATAATGGGG...............................................................................1811.001100000
...................................................................................................................................................................................................................................................GGAAATAATGGGGATATACCTGCGGT..................................................................2611.001100000
.......TACACCAGCACGT------GCAAGCAGT............................................................................................................................................................................................................................................................................................................2211.001000010
........................................................................................................................................................................................................GCAGGAAGTTTTGCCAAATATAAAAC.............................................................................................................2611.001010000
...................................................................................................................................................................................................AAAAAGCAGGAAGTTTTGC.........................................................................................................................1911.001000010
....................................................................................................................................................AGTCCCAAAAGCAAG---------ATTCTCT............................................................................................................................................................2211.001100000
............................................................................AT-------------------------ACAA----------GG---GGAT------CA-------------GAGTCC......................................................................................................................................................................................2011.001001000
................................................................................................................................................................................................................................................................................................................CAAGCATTCGTCAACCGCCATCTTCT.....2611.001010000
................ACGT------GCAAGCAGTGAAGAATTG----GT.............................................................................................................................................................................................................................................................................................2411.001000001
...........................................................................................................................GAT------CA-------------GAGTCCCAAAAGCAAG---------...................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................ATTCGTCAACCGCCATCTT.......1911.001010000
.........................................................................................................................................................................................................................................................................................................................GTCAACCGCCATCTTCTCC...1911.001100000
...................................GAAGAATTG----GTAAATCAAAA---GGT..............................................................................................................................................................................................................................................................................2311.001000010
..........ACCAGCACGT------GCAAGCAGTGAAGA.......................................................................................................................................................................................................................................................................................................2411.001000010
droBip1
ACCTTAATACACCAGCACGC------GCAAGCAGTGAACAATTG----TTAAATCAAAC---GGT---TA------AG-------------------------TCAA----------GG---GGAC------CA-------------GAGTCCCAATTACAAG---------ATACTCTTGATC------CTATTAAAAAGCAGGAAGTTTTGCCTAACATAAGGCGTATTCTAGGATCAACTGGAAACAATGGGGATATACCTGCGGTTCTGTTAAAACAAGTAACCCAGCGACCCA---TTCTAAGCGTTCGTCAGCCACCATCTTCTCCAAASizeHit CountTotal NormTotal
No Reads
dp5
CTCTTAATACACCGGCCCGCCAGCCCGCCAGCAACGAAGATTAT----TTGAGTGAACA---GAT---TG------GT-------------------------TCAA----------AG---AGAC------AA-------------GGTGCACAGAACGTGG---------ATTACAGTGGCC------CTAATAAGAAGCAGGAGGTGCTGCCAAATATAAGACGCATTCTCGGATCAAATGGTAAAAAAAGTGACATTCCAGCAGTTCTATTGAAGCAGGTAACTCCGAGACCGG---TCACCAGCATCCATCACCCACCGTCCTCTCCAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................TTCTCGGATCAAATGGTAAAAAA...................................................................................2312.0020200000000
.................................................................................................................................................................................................................................................................CATTCCAGCAGTTCTATTGAAGCAGGT...................................................2711.0010100000000
................................................................................................................................................................................CAGTGGCC------CTAATAAGAAG......................................................................................................................................1911.0010000100000
.......................................................................................................................................................CACAGAACGTGG---------ATTACAGT...........................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................TATTGAAGCAGGTAACTCCGAGAC........................................2411.0010100000000
.....................................................................................................................................................TGCACAGAACGTGG---------ATTACAGT...........................................................................................................................................................2211.0010100000000
...................................................................................................................................................................................................................................................................................................................GCATCCATCACCCACCGTCCT.......2111.0010100000000
..............................................................................................................................................................................................................................AGACGCATTCTCGGATCAAATGGT.........................................................................................2411.0010000001000
......................................................................................................................................................GCACAGAACGTGG---------ATTACAGT...........................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................ATTGAAGCAGGTAACTCCGA...........................................2011.0010100000000
..........................................................................................................A----------AG---AGAC------AA-------------GGTGCACAGAACGTGG---------ATT................................................................................................................................................................2811.0010010000000
.....................................................................G------GT-------------------------TCAA----------AG---AGAC------AA-------------GGA.........................................................................................................................................................................................1820.5010100000000
droPer2
CTCTTAATACACCGGCCCGCCAGCCCGCCAGCAACGAAGATTAT----TTGAGTGAACA---GAT---TG------GT-------------------------TCAA----------AG---AGAC------AA-------------GGTGCACAGAACGTGG---------ATTACAGTGGCC------CTAATAAGAAGCAGGAGGTGCTGCCAAATATAAGACGCATTCTCGGATCAAATGGTAAAAAAAGTGACATTCCAGCAGTTCTATTGAAGCAGGTAACTCCGAGACCGG---TCACCAGCATCCATCACCCACCGTCCTCTCCAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................ATAAGACGCATTCTCGGATC................................................................................................2012.002200000
.....................................................................................................................................................................................................................................................................................................................ATCCATCACCCACCGTCCT.......1911.001010000
.................................................................................................................................................................................................................................CGCATTCTCGGATCAAATG...........................................................................................1911.001100000
droWil2
CGCTTAATACACCTGCCCGCCCATCA--------------TCTC----CATATG----------------GAAATGATGACTATGCTAACAGCAGCAGCGAGCAACAGCGAACCCACCT---TTCCGG---CAA-------------GGATCC--------------------TGGCAAGGATA------CGAAGAAACGACAGGAAGTGTTACCTAACATACGCCGCATCCTGGGCTCAAATGGCAA---GGGCGACATCCCAGCAGTATTATTAAAGCAGGTTACTCAACGTCCGC---TTACTAACTATCACCATCCACCATCATCCCCCATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................ATTATTAAAGCAGGTTACTCAACGTCC.......................................2711.00100010
.................................................ATATG----------------GAAATGATGACTATGCT........................................................................................................................................................................................................................................................2211.00100001
.........CACCTGCCCGCCCATCA--------------TCTC----...............................................................................................................................................................................................................................................................................................2111.00101000
.................................................................................................................................................................................................................................................ATGGCAA---GGGCGACATCCCAGCA....................................................................2311.00100100
.................................................................................................................................................................................AAGGATA------CGAAGAAACGACAGGAAGT..............................................................................................................................2611.00100100
........................................................................................................................................................................................................................................................................................AGGTTACTCAACGTCCGC---TTACTAACTA........................2811.00101000
.......................................................................................AACAGCAGCAGCGAGCAACAGCGAACCC............................................................................................................................................................................................................................2811.00100010
.....................................................................................................................................................................................ATA------CGAAGAAACGACAGGA.................................................................................................................................1911.00100100
...........................................C----CATATG----------------GAAATGATGACTATGC.........................................................................................................................................................................................................................................................2311.00100010
.........................................................................................................................................................................................................................ACATACGCCGCATCCTGG....................................................................................................1811.00100010
.......................................................................AAATGATGACTATGCTAACAG...................................................................................................................................................................................................................................................2111.00101000
.......................................................................................................................................................................................................................................CTGGGCTCAAATGGCAA---GGGC................................................................................2111.00100001
.........................................CTC----CATATG----------------GAAATGATGAC..............................................................................................................................................................................................................................................................2011.00100100
droVir3
CACTTAATACACCGTCACGG------CCGGGCAATGATGCAGTCGCCGTTGAAGCATCC---GAT----CATAATAATAATGCCAATTATCATAA-----CGTGCAA----------GA---TAAAGGAGTGACCAATAATGGCAAGGAGTCC---------------------------AATG------CAAATAAGAGGCAGGAGGTTCTGCCGAACATTAGACGCATACTAGGATCAAATGGCAAGAAAGGTGACATACCTGCAGTTCTATTGCGCCACGTGACACAGCGACCCT---TGGTGAACTACCATCAGCCGCCAGCCTCCCCGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................ATACCTGCAGTTCTATTGCGCCACGT...................................................2612.002001100000000000000000000000000000000000000000000000000000000000
.......................................................................................................GCAA----------GA---TAAAGGAGTGACCAATAAT..................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................TATCATAA-----CGTGCAA----------GA---TAAAGGAGT............................................................................................................................................................................................................2611.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................GCCAATTATCATAA-----CGTGCAA----------GA---TAAA.................................................................................................................................................................................................................2711.001000000000000000000000000000000001000000000000000000000000000000
..............................GCAATGATGCAGTCGCCGT..............................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................AATAATGGCAAGGAGTCC---------------------------AATG------CAAAT............................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................ATAATGGCAAGGAGTCC---------------------------AATG------.................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.......TACACCGTCACGG------CCGGGCA..............................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ATACCTGCAGTTCTATTGCGC........................................................2111.001000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................TAGACGCATACTAGGATCA...............................................................................................1911.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................AATG------CAAATAAGAGGCAGGAGG...............................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
............CGTCACGG------CCGGGCAATGATGCAGTCGCCGTTGAAGCATCC---GAT----CAT.......................................................................................................................................................................................................................................................................4711.001000000000000000000000000000000000000000000000000000000001000000
.............................................CCGTTGAAGCATCC---GAT----..........................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................GACACAGCGACCCT---TGGTGAA...........................2111.001000000000000000000000000000000001000000000000000000000000000000
............................................................................................TAA-----CGTGCAA----------GA---TAAAGGAGT............................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................GTGACATACCTGCAGTTCTATT............................................................2211.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................AGACGCATACTAGGATCAAATGGC.........................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AGGTGACATACCTGCAGTT.................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GACCAATAATGGCAAGGAGTCC---------------------------A..........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................CCAATAATGGCAAGGAGTCC---------------------------AATG------C................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ACCAATAATGGCAAGGAGTCC---------------------------AAT........................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................ACTAGGATCAAATGGCAAG......................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................GCCGAACATTAGACGCAT.........................................................................................................1811.001000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................ACAGCGACCCT---TGGTG.............................1611.001000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................CACGTGACACAGCGACCCT---TGGT..............................2311.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................ATAA-----CGTGCAA----------GA---TAAAG................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................ATGGCAAGGAGTCC---------------------------AATG------C................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................ATTAGACGCATACTAGGATCAAAT............................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GACATACCTGCAGTTCTATTGCGCC.......................................................2511.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GAACTACCATCAGCCGCCAGCCT.......2311.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................CAGGAGGTTCTGCCGAACATT.................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................AA-----CGTGCAA----------GA---TAAAGGA..............................................................................................................................................................................................................1820.501000000000000000000000000000000000000000000000000000000000001000
droMoj3
CACTTAATACACCGGCACGC------AATGGAAATGATGCCGGTGCAGTTGAATCATCA---GAT----C------CTAATGCTAAAAATCGTAA-----AACACAA----------GA---TGTC------GG-------------GATTTCTAATAGCAAA---------G-----AAAATT------CAAATAAAAGGCAAGAAGTATTGCCGAATATCAGACGCATACTGGGATCAAATGGTAAGAAAGGTGACATTCCTGCAGTTTTGTTGCGCCATGTGACACAGCGTCCTA---TGGTCCCCTATCATCAGCCTCCAGCATCGCCGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................GCAGTTGAATCATCA---GAT----C------...................................................................................................................................................................................................................................................................1911.001100000
........................................................................................ATCGTAA-----AACACAA----------GA---TGTC------GG-------------GA..........................................................................................................................................................................................2411.001000001
...............................................................................................................................................................................................................................................................................................ACAGCGTCCTA---TGGTCCCCTATCATCAGC................2911.001000001
................ACGC------AATGGAAATGATGCCGGT...................................................................................................................................................................................................................................................................................................2211.001000001
........................................................................................................................................................CTAATAGCAAA---------G-----AAAATT------CAAATA...........................................................................................................................................2411.001100000
..........................................................................................CGTAA-----AACACAA----------GA---TGTC------GG-------------............................................................................................................................................................................................2011.001100000
droGri2
CGCTAAATACGCCTTCGCGC------AATG------AGGCCACCACAATGGAGGCCAGC---GAA----AGAGATACTAGTAATAATAATAATAACAATGAGCAAAA--------------------------G-------------TTGTCGATGGAGGCGA---------GCAACAAGGAGG------CAAACAAGCGACAGGAAGTGTTGCCAAATATACGCCGTATTTTGGGTTCTAATGGCAAAAAGGGCGATATACCCGCCGTATTGTTGAGGCAAGTGACGCAAAAGCCCAA--TAAT---TATGC-ACAGGCGCCGGCAGCGCCAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................GCAAAA--------------------------G-------------TTGTCGATGGAGGCG.............................................................................................................................................................................2211.00110
.....................................................................................................................................G-------------TTGTCGATGGAGGCGA---------GCA................................................................................................................................................................2011.00101
...............................................................................................................................................................................................................................................................................................................AT---TATGC-ACAGGCGCCGGCAGCG.....2311.00110

Generated: 05/19/2015 at 03:52 PM