ID:

dsi_8650

 Coordinate:

3l:12711138-12711287 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.8 -23.7 -23.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
PROTOPDNAP+
mature
  1. 2l:22425319-22425343 +
  2. 2l:22774975-22774999 +
  3. 2l:22942007-22942031 +
  4. 2r:1258482-1258506 +
  5. 2r:1778486-1778510 +
  6. 2r:2203882-2203906 +
  7. 2r:2621709-2621733 +
  8. 3l:23373776-23373800 +
  9. 3l:23952576-23952600 +
  10. 3l:24111539-24111563 +
  11. 3l:24230568-24230592 +
  12. 4:354983-355007 +
  13. node_18749:531-555 +
  14. node_124396:1284-1308 +
  15. node_73012:1025-1049 +
  16. node_105875:7411-7435 +
  17. node_38913:7381-7405 +
  18. node_4791:4380-4404 +
  19. node_27742:6405-6429 +
  20. node_110192:76-100 +
  21. dsi_31196  2l:10456825-10456849 +
  22. 2l:19704781-19704805 +
  23. dsi_31312  2l:20743459-20743483 +
  24. 2r:1453958-1453982 +
  25. 2r:1466000-1466024 +
  26. 2r:2175931-2175955 +
  27. dsi_31385  3l:18592484-18592508 +
  28. 3l:23444536-23444560 +
  29. 3l:23976924-23976948 +
  30. 3r:2135999-2136023 +
  31. 3r:2247275-2247299 +
  32. dsi_32135  3r:6866406-6866430 +
  33. x:867402-867426 +
  34. x:925454-925478 +
  35. dsi_31973  x:16797612-16797636 +
  36. node_95717:2123-2147 +
  37. node_49804:346-370 +
  38. node_55970:114-138 +
  39. node_50966:4997-5021 +
  40. node_8255:321-345 +
  41. 2l:20835129-20835153 +
  42. 2l:20934168-20934192 +
  43. 2l:21446741-21446765 +
  44. 2l:22425221-22425245 +
  45. 2r:74018-74042 +
  46. 2r:520143-520167 +
  47. 2r:1454007-1454031 +
  48. 2r:1454056-1454080 +
  49. dsi_31843  2r:1759774-1759798 +
  50. 2r:1860466-1860490 +
  51. 3r:6576005-6576029 +
  52. 3r:6865188-6865212 +
  53. 4:624368-624392 +
  54. x:20473350-20473374 +
  55. node_32706:434-458 +
  56. node_72290:8102-8126 +
  57. node_112952:387-411 +
  58. node_69719:712-736 +
  59. node_48900:878-902 +
  60. node_87369:206-230 +
  61. 2r:793612-793636 +
  62. 2r:2059815-2059839 +
  63. 3l:23741890-23741914 +
  64. dsi_31898  3r:302695-302719 +
  65. dsi_32067  3r:5132103-5132127 +
  66. dsi_31376  3r:17482934-17482958 +
  67. node_134257:142-166 +
  68. node_8311:498-522 +
  69. 2l:22963596-22963620 +
  70. 2l:23065113-23065137 +
  71. 2r:3166403-3166427 +
  72. 3l:23076434-23076458 +
  73. 3l:23990822-23990846 +
  74. dsi_31281  3r:14653810-14653834 +
  75. node_32604:203-227 +
  76. node_96912:75-99 +
  77. node_34956:415-439 +
  78. node_85668:11153-11177 +
  79. node_109109:417-441 +
  80. node_21405:608-632 +
  81. node_89630:977-1001 +
  82. 2l:20975479-20975503 -
  83. 2l:21439535-21439559 -
  84. 2l:21539433-21539457 -
  85. 2r:70109-70133 -
  86. 2r:818867-818891 -
  87. 2r:2180697-2180721 -
  88. dsi_8650  3l:12711146-12711170 -
  89. 3l:22871718-22871742 -
  90. 3l:22928555-22928579 -
  91. 3l:22988583-22988607 -
  92. dsi_31899  3r:302779-302803 -
  93. 4:1001995-1002019 -
  94. x:787789-787813 -
  95. x:868450-868474 -
  96. x:20536019-20536043 -
  97. node_40194:26-50 -
  98. node_59659:1383-1407 -
  99. node_94812:132-156 -
  100. node_35645:106-130 -
  101. node_110930:311-335 -
  102. 2l:21717464-21717488 -
  103. 2l:22040876-22040900 -
  104. 2l:22343944-22343968 -
  105. 2l:23474699-23474723 -
  106. 2r:754258-754282 -
  107. 3l:23432081-23432105 -
  108. 3l:23515072-23515096 -
  109. 3l:24094131-24094155 -
  110. dsi_31294  3r:14653893-14653917 -
  111. x:20316272-20316296 -
  112. node_77409:3863-3887 -
  113. node_58045:153-177 -
  114. node_117782:25-49 -
  115. node_22553:71-95 -
  116. node_19457:5475-5499 -
  117. 2l:21711358-21711382 -
  118. 2l:22861564-22861588 -
  119. 2l:23112613-23112637 -
  120. 2l:23177779-23177803 -
  121. 2r:70011-70035 -
  122. 2r:70060-70084 -
  123. 2r:3162396-3162420 -
  124. 2r:3162445-3162469 -
  125. dsi_31397  3l:18592572-18592596 -
  126. 3l:22543572-22543596 -
  127. 3l:23076519-23076543 -
  128. 3l:23225940-23225964 -
  129. 3r:2136771-2136795 -
  130. dsi_31390  3r:17483021-17483045 -
  131. dsi_31643  x:16797700-16797724 -
  132. x:20476477-20476501 -
  133. node_95080:605-629 -
  134. node_6609:1657-1681 -
  135. node_27019:1021-1045 -
  136. node_31462:562-586 -
  137. 2l:20856963-20856987 +
  138. 2r:1264710-1264734 +
  139. 4:72310-72334 +
  140. x:6395924-6395948 +
  141. dsi_31160  x:20794270-20794294 +
  142. node_118182:6442-6466 +
  143. node_111346:5848-5872 +
  144. node_51476:1410-1434 +
  145. node_39540:365-389 +
  146. node_22417:3338-3362 +
  147. 2l:20638-20662 -
  148. 2l:17960467-17960491 -
  149. 2l:20872977-20873001 -
  150. 2l:21018099-21018123 -
  151. 2l:21435388-21435412 -
  152. 2l:22016528-22016552 -
  153. 2l:22837598-22837622 -
  154. 2l:23270792-23270816 -
  155. 2r:58067-58091 -
  156. 2r:435027-435051 -
  157. 2r:3150452-3150476 -
  158. 2r:3162494-3162518 -
  159. 3l:23607512-23607536 -
  160. 3l:23655878-23655902 -
  161. 3l:24069783-24069807 -
  162. 3r:6577059-6577083 -
  163. dsi_31074  3r:6866657-6866681 -
  164. x:20197647-20197671 -
  165. node_96667:25-49 -
star

Sense Strand Reads

AATGCCTGCGGACTGACTGCTGCCAAAAGCCAGGCTTGTTTTCCAAAAAGGTTACTAACTCTTAACGTCTAGACTTTAGACTGCTAGACTGCCCATATTTGCATAGGTAGCTTTTAAATTCTGCAGCTCATTCATCTTCTATTTCTATCCTATAACCAAAGACACTAGAATAACAAGATGCGTAACGGCCATACATTGGTTTGGCACTATGCAGCGCCACTTTTTTGGTGAAGACCAAATTTGCTCTCTT
**************************************************(((((............((((.....))))((((.((((((((.((......)).))))).........)))))))......((((((....(((((..................)))))....)))))).))))).((((.....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGCCAT.......................................................... 25 0 20 63.15 1263 0 906 103 0 254 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGGCCATACAT...................................................... 25 0 20 52.90 1058 1056 0 0 0 0 0 0 0 2 0 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGCCATA......................................................... 23 0 20 27.30 546 0 0 456 89 0 0 0 0 0 1 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGGCC............................................................ 19 0 20 8.80 176 0 0 0 176 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGCCATA......................................................... 26 0 20 5.75 115 0 0 0 0 0 106 0 0 9 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGC............................................................. 22 0 20 4.85 97 0 90 0 0 0 0 0 0 0 7 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGCCATAC........................................................ 24 0 20 2.95 59 0 0 0 0 56 0 0 0 3 0 0 0
...................................................................................................................................................................................................TTGGTTTGGCACTATGCAGCGCCACT............................. 26 0 3 2.67 8 0 0 0 6 1 0 1 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGCCATACA....................................................... 28 0 20 2.65 53 0 0 0 0 0 0 42 11 0 0 0 0
...................................................................................................................................................................................................TTGGTTTGGCACTATGCAGCGCCAC.............................. 25 0 3 2.33 7 0 0 0 7 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGG.............................................................. 21 0 20 1.60 32 0 0 32 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TACATTGGTTTGGCACTATGCAGCGC................................. 26 0 3 1.00 3 0 0 0 2 1 0 0 0 0 0 0 0
..TGCCTGCGGACTGACTGCTGC................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................TTGGTTTGGCACTATGCAGCGCC................................ 23 0 3 1.00 3 2 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCACTATGCAGCGCC................................ 17 0 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TAGAATAACAAGATGCGTAACGGCC............................................................ 25 0 20 0.50 10 0 0 0 0 0 0 0 0 10 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGGCCATACATT..................................................... 26 0 20 0.50 10 0 0 0 0 0 1 0 0 9 0 0 0
.............................................................................................................................................................AAAGACACTAGAATAACAAGATGCGT................................................................... 26 0 20 0.45 9 0 0 0 0 0 0 0 9 0 0 0 0
................................................................................................................................................................GACACTAGAATAACAAGATGCGTAACGGC............................................................. 29 0 20 0.45 9 0 0 0 0 9 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGCCAA.......................................................... 25 1 20 0.40 8 0 0 0 8 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGAATAACAAGATGCGTAACGGCC............................................................ 24 0 20 0.40 8 0 0 0 0 0 0 0 0 0 8 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGCCA........................................................... 21 0 20 0.35 7 0 0 0 0 0 0 0 7 0 0 0 0
...............................................................................................................................................................................................TACATTGGTTTGGCACTATGCAGCGCC................................ 27 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CACTATGCAGCGCCACTTTTTTG....................... 23 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCACTATGCAGCGCCACTT............................ 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGGGTTTGGCACTATGCAGCGCCAC.............................. 25 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTGGCACTATGCAGCGCCA............................... 19 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CATTGGTTTGGCACTATGCAGCGCCAC.............................. 27 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGCAGCGCCACTTTTTTGGTGAAGACC.............. 27 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TATGCAGCGCCACTTTTTTGGTGAAGAC............... 28 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CACTATGCAGCGCCACTTTTTTGGA..................... 25 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTTTGGCACTATGCAGCGCCACT............................. 24 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GCACTATGCAGCGCCACTTT........................... 20 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTATGCAGCGCCACTT............................ 16 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTGGCACTATGCAGCGCC................................ 18 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CATTGGTTTGGCACTATGCAGCGCC................................ 25 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................TGCAGCGCCACTTTTTTGGTGAAGA................ 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTTGGCACTATGCAGCGCC................................ 19 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TACATTGGTTTGGCACTATGCAGCGCCA............................... 28 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACTATGCAGCGCCACTTT........................... 18 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGGTTTGGCACTATGCAGCGCCACTTT........................... 27 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................TTTTTGGTGAAGACCAAATTTGCTC.... 25 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGGTTTGGCACTATGCAGCGCCAC.............................. 24 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGGTTTGGCACTATGCAGCGCCA............................... 23 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TAGAATAACAAGATGCGTAACGGCCA........................................................... 26 0 20 0.25 5 0 0 0 0 0 0 5 0 0 0 0 0
............................................................................................................................................................................ACAAGATGCGTAACGGCCA........................................................... 19 0 20 0.25 5 0 0 0 5 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTTTGGCACTATGCAGCAC................................. 20 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGTCATACA....................................................... 28 1 20 0.25 5 0 0 0 0 0 0 0 0 0 0 5 0
..............................................................................................................................................................................AAGATGCGTAACGGCCATACATTGGT.................................................. 26 0 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0
......................................................................................................................................................TATAACCAAAGACACTAGAATAACAAGA........................................................................ 28 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GGATAACAAGATGCGTAACGGCCAT.......................................................... 25 1 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACAAGATGCGTAACGGCCATACA....................................................... 23 0 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAGCAAGATGCGTAACGGCCAT.......................................................... 25 1 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACCAAAGACACTAGAATAACAAGATGCGT................................................................... 29 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGGCCAGACATT..................................................... 26 1 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0
.......................................................................................................................................................................GAATAACATGATGCGTAACGGCCA........................................................... 24 1 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGC............................................................. 19 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGTCAT.......................................................... 22 1 20 0.15 3 0 0 0 0 0 0 0 3 0 0 0 0
......................................................................................................................................................................AGAATAACAAGATGCGTAACGGCCAT.......................................................... 26 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0
......TACGGACTGACTCCTGCC.................................................................................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................TAACCAAAGACACTAGAATAACAAGATGCGT................................................................... 31 0 16 0.13 2 0 0 0 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................GAATAGCAAGATGCGTAACGGCCA........................................................... 24 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAATGGCCATACA....................................................... 24 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAGATGTGTAACGGCCATACATT..................................................... 26 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGAATAACAAGATGCGTAACGGAC............................................................ 24 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGACAA.......................................................... 25 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGCCCA........................................................... 24 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGCC............................................................ 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0
..........................................................................................................................................................................TAACAAGATGCGTGTCGGCCATACATT..................................................... 27 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGCCT........................................................... 24 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................AAAGACACTAGAATAACAAGATGCGTA.................................................................. 27 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0
.......................................................................................................................................................................GAAGAACAAGATGCGTAACGGCCATA......................................................... 26 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................GCTTGCTTTCCAAAAA......................................................................................................................................................................................................... 16 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCCACTTTTTTGGTAAGGAG............... 20 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TAACCAAAGACACTAGAATAACAAGA........................................................................ 26 0 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................TAACCAAAGACACTAGAATAACAAGAT....................................................................... 27 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.....ATACGGACTGACTCCTGCC.................................................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TAACAAGATACGTATCGGCGATACATT..................................................... 27 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGCGTAACGGGCATACATTGGTTTGG.............................................. 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGGCCAAACATC..................................................... 26 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TAACAAGACGCGTAACGGCCATACA....................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGGCCAAACATT..................................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................CAAAGACACTAGAATAACAAGATGCGT................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................CGAGACTCTAGCCTGCTA.................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGACCA........................................................... 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGACATAC........................................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................AGAATAACAAGATTCGTAACGGCCA........................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAGATGTGTAACGGCCAT.......................................................... 18 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CATGCGTAACGGCCAT.......................................................... 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTACCGGCCATACATTGG................................................... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGCCTT.......................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTCACGG.............................................................. 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGACGCGTAACGGCCAT.......................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTACATTGGTTCGGCACTATGCAGC................................... 25 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GACACTAGAATAACAAGATGCGTAACGG.............................................................. 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGTAACGGCCATACCTT..................................................... 30 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGCCTT.......................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACCAAAGACACTAGAATAACAAGAT....................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................GAACAAGATGCGTAACGGCCATACATT..................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGGTCATACATT..................................................... 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGCCATACATTGGT.................................................. 30 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................AACTTTTAGACGTTAGACT........................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................TAACAAGATGCGTAACGACCATACA....................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TACTAGAATAACAAGATGCGTAACGG.............................................................. 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................TTGGTTTGGCACTATGC...................................... 17 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACCAAAGACACTAGAAAA.............................................................................. 18 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TAATAAGATGCGTAACGGCCATACA....................................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGACGCGTAACGGCCATA......................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................AAGATACGTATCGGCGATACATT..................................................... 23 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGACCATACA....................................................... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAATAACAAGATGCGAAACGGCCAT.......................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TAACAAGATGCGTAACGGTCATAC........................................................ 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAAGATGCGTAACGGCCATACATTG.................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................TACATTGGTTTGGCACTATGCAG.................................... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TAATAAGATGCGTAACGGCCATACAT...................................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTAGAATAACAAGATGCGTAACGGC............................................................. 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAGATGCGTGACGGCCATACATTGGTT................................................. 27 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTACGGACGCCTGACTGACGACGGTTTTCGGTCCGAACAAAAGGTTTTTCCAATGATTGAGAATTGCAGATCTGAAATCTGACGATCTGACGGGTATAAACGTATCCATCGAAAATTTAAGACGTCGAGTAAGTAGAAGATAAAGATAGGATATTGGTTTCTGTGATCTTATTGTTCTACGCATTGCCGGTATGTAACCAAACCGTGATACGTCGCGGTGAAAAAACCACTTCTGGTTTAAACGAGAGAA
**************************************************(((((............((((.....))))((((.((((((((.((......)).))))).........)))))))......((((((....(((((..................)))))....)))))).))))).((((.....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O001
Testis
 M024
male body		 O002
Head
 GSM343915
embryo
..........................................................................................................................................................TGGTTTCTGTGATCTTATTGTTCTAC...................................................................... 26 0 20 10.80 216 0 0 156 0 0 60 0 0 0 0 0 0
.............................................................................................................................CGAGTAAGTAGAAGATAAAGATAGGAT.................................................................................................. 27 0 1 8.00 8 3 3 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGTCGAGTAAGTAGAAGATAAAGAT....................................................................................................... 25 0 1 7.00 7 1 4 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................GGTTTCTGTGATCTTATTGTTC......................................................................... 22 0 20 5.25 105 0 0 0 70 35 0 0 0 0 0 0 0
................................................................................................................................................................CTGTGATCTTATTGTTCTACG..................................................................... 21 0 20 5.05 101 101 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATTGGTTTCTGTGATCTTATTGTTC......................................................................... 25 0 16 4.13 66 2 2 8 12 31 3 7 1 0 0 0 0
.............................................................................................................................CGAGTAAGTAGAAGATAAAGATAGGATAT................................................................................................ 29 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTGGTTTCTGTGATCTTATTGTTC......................................................................... 24 0 20 2.35 47 0 20 0 27 0 0 0 0 0 0 0 0
....................................................................................................................TTAAGACGTCGAGTAAGTAGAAGAT............................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGAGTAAGTAGAAGATAAAGAT....................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAGTAGAAGATAAAGATAGGATAT................................................................................................ 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GTTTCTGTGATCTTATTGTTCTACG..................................................................... 25 0 20 1.90 38 38 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TATTGGTTTCTGTGATCTTATTGTTC......................................................................... 26 0 5 1.80 9 0 1 0 1 6 1 0 0 0 0 0 0
..........................................................................................................................................................TGGTTTCTGTGATCTTATTGTTC......................................................................... 23 0 20 1.75 35 0 35 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTCTGTGATCTTATTGTTCTACG..................................................................... 23 0 20 1.50 30 30 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAACCACTTCTGGTTTAAACGAGAGA. 26 0 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGAAAATTTAAGACGTCGAGTAAGT.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AGAAGATAAAGATAGGATATTGGTTTCTG....................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GAGTAAGTAGAAGATAAAGATAGGATAT................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGAGTAAGTAGAAGATAA........................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................GCGCATTGCAGATCTGA............................................................................................................................................................................... 17 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TCGAGACGTCGAGTAAGTAGAAGTT............................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GAGTAAGTAGAAGATAAAGATAGGAT.................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................CGGTCCGAACAAAAGGTTTTTCCAA..................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................TTTTTCCAATGATTGAGAATTGCAG..................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACCACTTCTGGTTTAAACGAGAGA. 24 0 3 1.00 3 2 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................CGAGTAAGTAGAAGATAAAGATAGGATA................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TCGAGTAAGTAGAAGATAAAGATAGGAT.................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CCATCGAAAATTTAAGACGTCGAGT........................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGACGATCTGACGGGTAT......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....GGACGCCTGACTGACGACGGTTTTC............................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GGTTTAAACGAGAGA. 15 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTGGTTTCTGTGATCTTATTGTTCTAC...................................................................... 27 0 20 0.60 12 1 2 0 0 0 5 4 0 0 0 0 0
...............................................................................................................................................................TCTGTGATCTTATTGTTC......................................................................... 18 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0
......................................AAAAAGTTTTTCCAATGATA................................................................................................................................................................................................ 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CATTGCCGGTATGTAA..................................................... 16 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTCTGTGATCTTATTGTTCTAC...................................................................... 23 0 20 0.45 9 0 0 6 0 0 3 0 0 0 0 0 0
..............................................................................................................................................................ATCTGTGATCTTATTGTT.......................................................................... 18 1 20 0.45 9 0 0 0 0 0 0 0 0 9 0 0 0
..................................................................................................................................................................................ACGCATTGCCGGTATGTAACCAAACCGT............................................ 28 0 20 0.40 8 0 0 4 0 0 0 3 1 0 0 0 0
..........................................................................................................................................................TGGTTTCTGTGATCTTATTGTTCT........................................................................ 24 0 20 0.35 7 4 3 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAGTAGGAGATAAAGGTAAGATA................................................................................................. 23 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CCACTTCTGGTTTAAACGAGAGA. 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
................................CCGAACAAAAGGTTT........................................................................................................................................................................................................... 15 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCGGTGAAAAAACCACTTCTGGTT............ 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACCACTTCTGGTTTAAACGAGAGA. 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACGCATTGCCGGTATGTA...................................................... 18 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGCATATTGGTTTCTGTGATCT................................................................................. 22 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................TTATTGGTTTCTGTGATCTTATTGTTC......................................................................... 27 1 8 0.25 2 0 0 0 0 1 0 1 0 0 0 0 0
.........................................AGGTTTTTCCAATGG.................................................................................................................................................................................................. 15 1 19 0.21 4 0 0 2 0 0 0 2 0 0 0 0 0
.......................................................................................................................................................TATTGGTTTCTGTGATCTTATTGTT.......................................................................... 25 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TATAGGCTTCTGTGATCTTATTGTTC......................................................................... 26 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................GTATGTAGAAGATGAAGATAT..................................................................................................... 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................ATATTGGTTTCTGTGATCTTATTGTTC......................................................................... 27 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TCTGTTTTAAACGAGAGA. 18 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATTGGTTTCTGTGATATTATTGTTC......................................................................... 25 1 18 0.17 3 0 0 0 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CCCTATGGTTTAAACGAGAGA. 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................AAAGGTTATTCGAATGA.................................................................................................................................................................................................. 17 2 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0
...............................................................................................................................................................................................ATGTAACCAAACCGTGATACGTC.................................... 23 0 20 0.15 3 0 0 1 0 0 0 1 1 0 0 0 0
...........................................................................................................................................................................................CGGTATGTAACCAAACCGTGATACGT..................................... 26 0 20 0.15 3 1 0 0 0 0 1 0 0 0 0 0 1
..........................................................................................................................................................TGGTTTCTGTGATCTTATTGTTGT........................................................................ 24 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................................AGGTTTTTCCAATGGGTG............................................................................................................................................................................................... 18 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTATTGGTTTCTGTGGTCTTATTGTTC......................................................................... 27 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACGAAGCGGTGAAAAAACCATT................... 22 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................GCATTGCCGGTATGTAACCA.................................................. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCTGTGATCTTATTGTTCTACG..................................................................... 22 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
...........................................................................................................................................................................................AGGTATGTAACCAAACCGTGATACGTC.................................... 27 1 20 0.10 2 0 0 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................GTGATCTTATTGTTCTACGC.................................................................... 20 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGTTTCTGTGATCTTATTGTTCTA....................................................................... 24 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TAGTGGTTTCTGTGATCTTATTGTTC......................................................................... 26 1 20 0.10 2 0 0 0 0 1 0 0 1 0 0 0 0
..........................................................................................................................................................TGGTTTCTGTGATCTTATTGTTCTA....................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACTTCTGGTTTAAAA....... 15 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................................ACGAAGCGGTGAAAAAACCAT.................... 21 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................TATCGGTTTCTGTGATCTTATTGTTC......................................................................... 26 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................ATTGGTTTCTGTGATCTTATTGTTCT........................................................................ 26 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATTGGTTTCTGTGATCTTATTGTAC......................................................................... 25 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATTGGTGTCTGTGATCTTATTGTTC......................................................................... 25 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................ATTGGTTTCTGTGATCTTATTGTT.......................................................................... 24 0 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................ATTGGTTTCTGTGATCTTATTGT........................................................................... 23 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATTGGTTTTTGTGTTCTTATTGTTC......................................................................... 25 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGGTATGTAACCAAACCGTGATACGTC.................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................TTGGTTTCTGCGATCTTATTGTTC......................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................GGTTTCTGTGATCTTATTGTTCTACG..................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGATCTTATTGTTCTA....................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GGTATGTAACCAAACCGTGAT......................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATTGCCGGTATGTAACCAAATCGTGAT......................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................TGCCGGTATGTAACGAAACCGTGATACGT..................................... 29 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TCTACGCATTGCCGGTATGTAACCAAAT............................................... 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCGGGTATGTAACCAAACCGTGATACGT..................................... 28 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TGGTTTCTGTGATCTTATTGGTC......................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................TCTTATTGTTCTACGCATTGCCGGTAT......................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................ATTGCCGGTATGTAA..................................................... 15 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................AGGTTTTTCCAATGGGTGG.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACGCCTTGCCGGTATGTAACCAAACCGT............................................ 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................TGGTTTCGGTGATCTTATTGTTC......................................................................... 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..................CGACGGTGTTCGGTC......................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................AGTGATCTTATTGTTCTAC...................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................ATTGTTCTACGCATTGCCGGTATGTA...................................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................AGTATGTAACCAAACCGTGATACTTC.................................... 26 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GCTTTCTGTGATCTTATTGT........................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTGGTTTGTGTGATCTTATTGTTC......................................................................... 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................TCCAAGGCCTGAGAATTG........................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................CCGTCGTGTAAGTAGAAGAA............................................................................................................. 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTGTTCTACGCATTGCCGGTATG........................................................ 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCGGTATGTAACCAAACCGTGATACGT..................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATTGTTCTACGCATTGCCGGTATGT....................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGTTTCTGTGATCTTATTGTTCGAC...................................................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGGTCTACGCATTGCCGGTAAGTAACCA.................................................. 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGTATCTGTGATCTTATTGTTC......................................................................... 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGTTTCTGTGATCTTATTGTT.......................................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................ATGGGTTTCTGTGATCTTATTGTTC......................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:12711088-12711337 - dsi_8650 AATGCCTGCGGAC--T-----------------------------------GAC--------TGCTGCCAAA---AGCCAGGCTTGTTTTCC-AAAAAGGTTACTAACTC----TTAACGTCTAGACTT---TAGACTGCTAGACTGCCCATATTTGCATAGGTAGCTTTTAAATTCTGCAGCTCATTCATCTTCTATTTCTATCCTA-----TAACCAAAGAC-ACTAGAA-TAACAAGATGCGTAACGGCCATACATTGGTTTGGCACTATGCAGCGCCACTTTTTTGGTG----------AAGACCAAATTTGCT--CTCTT
droSec2 scaffold_0:5191669-5191827 - AATGCCTGCGGAC--T-----------------------------------GAC--------TGCTGCCAAA---AGCCAGGCTTGTTTTCC-AAAAAGGTTACTAACTC----TTTACGTCTAGACTT---TAGACTGCTAGACTGCCCACATTTGCATAGGTAGCTTTCAAATTCTGCAGCTCATTCATC----------------------------------------------------------------------------------------------TTTTATT----------TCACC---AAACT-A--TCCTA
dm3 chr3L:13019915-13020059 - AATGCCTGCGGAC--T-----------------------------------GAC--------TGCTGCCAAA---AACCAGGCATGTTTTCC-AAAAAGGTTACTAACTC----TTTACGTCTAGACTT---TAGACTGCTAGACTGCCCATATTAGCATAGGTAGCTTTCAAATTCTGCAGCTCATTCATT--------------------------------------------------------------------------------------------------------------------------TTCT--ATTTC
droEre2 scaffold_4845:583806-584012 + TTA--------------------------------------------------------------------------------------TTT-AAAAAGGCCGCTGGTTC----ACTATCTATAGAGTAACATGGTGAACTGATTTATTTATATTAGAATAGTTTATTTTTAGTAGTTGCAAAT-----------TCTGTCCATGTCAGCAAAAAACCAAAGAC-ACTAGAA-TAATAAGATGCGTAACGGAAATACATTGGTTTTGCACTACGCAGCCAC--TTTTTTGGTG----------GCCGCAATAATTGCT--CTCTC
droYak3 v2_chrUn_5084:6953-7082 - CTTTTA--G----------------------------ATTTTTATATCCGTTACTCGTAGAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------CGAGCAAAAAC-ATTATAA-TAACAAGATGCGTAACGGCCATACATTGGTTTGGCACTATGCAGCCAC--TTTTTTGGTG----------ACGACCAAAATTGCT--CTCTT
droEug1 scf7180000409711:6107327-6107395 - ATAGCCAGCAGAC-------------------------------------------------TGCTGCCAGA---AACATAATTTCTTTTCT-A-ACAAGTTACAAGCTT----AATGGGTCTAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301521:21368-21486 - ATTTATCTCTTCC--T-----------------------------------TGCTC------TT-----------------------------------------------------------------------------------------------------------------------------------------------------CAACCAAAGACCAATATAATGTCTAAGATGAGTACCGACCATACGTTCGTTTTGCTATATGCAGCTCA--TTTTTTGGTG----------GCGACGAAAATCTCG--CTCTC
droTak1 scf7180000414763:8153-8272 + CATCCA--C----------------------------CATCTACCA------TCCG------TT-----------------------------------------------------------------------------------------------------------------------------------------------------GAACCAAAGACCAATATAATCTCTAAGATGAGTAACGGCCATACATACGTTTTGCAATATGCAGCTCA--TTTTTTGGTG----------GCGACGAAAATCTCG--CTCTC
droEle1 scf7180000491255:1419433-1419502 - AATGCCCCCAGTT--T-----------------------------------------------G---CCAGAAGAAACTAC-----ATTTTCTA-AAAGGTAGTCAACTTTACGTCTGCGTCTAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------
droRho1 scf7180000768383:1285-1442 + AGACTGTTTGGATTTTTTACTTAGCTCTGTAATTCTGCATCTACAG----TTAGCTCTAGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAAAGACCAATATAAAATCTAAGATGCGTAACGCCCATACATTGGTTTTGCAATATGCAGTTCG--TTTTTTGGTG----------GCGACGAAAATTCCG--CTCTC
droFic1 scf7180000454048:717700-717778 + AATGCCTGCAGAC--C-----------------------------------GAC--------AGCTTCGAGA---AACGACATTTCTTTTCT-A-AAAGGTAACAAACCTGATGTCTGCGTCTAGACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droKik1 scf7180000299157:134-294 + CATACATACATAC--TTTG--------------------------------GGC--------AGCTTCGCGA--------TATTCTGCGCCT-AGCAAATTTACATATTT----CATACGCAC------------------------------------------------------------------------------------------ATACCAAAGAC-AATAGATTTAACAAGATGCCTTACGACCATACATTCGTTTTGCAATATGAGGCTGC--ATTTTTGATG----------GCAACGACAATCGCG------T
dp5 XL_group3a:1955415-1955516 + CCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCAAAGAC-AATATAAATAGTAAGATGAGTAACGACCATGCATTTCAATGGTCATATGCAGCGAGG-TTTTTCGGAA----------GAGACGAAATACTCGCTGTC-T
droPer2 scaffold_11:2724693-2724794 - CCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCAAAGAC-TATATAAATAGTAAGATGAGTAACGACCATGCATTTCAATGGTCATATGCAGCGAGG-TTTTTCGGAA----------GAGACGAAATACTCGCTGTC-T
droWil2 scf2_1100000004511:6485439-6485444 - AAAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12729:18494-18620 - TCATAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTACCAAAGAC-AATATAAACACTAAGATGAGTAACG-CAATACAACAAAATGCTACTATGCAGCTTAA-TTTTTTGAAAATTGAGAACGAAAACGAAA-TCT-GT-AGCAT
droGri2 scaffold_15110:22963582-22963582 - A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATGCCTGCGGAC--T-----------------------------------GAC--------TGCTGCCAAA---AGCCAGGCTTGTTTTCC-AAAAAGGTTACTAACTC----TTAACGTCTAGACTT---TAGACTGCTAGACTGCCCATATTTGCATAGGTAGCTTTTAAATTCTGCAGCTCATTCATCTTCTATTTCTATCCTA-----TAACCAAAGAC-ACTAGAA-TAACAAGATGCGTAACGGCCATACATTGGTTTGGCACTATGCAGCGCCACTTTTTTGGTG----------AAGACCAAATTTGCT--CTCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................GAA-TAACAAGATGCGTAACGGCCAT......................................................................252063.15126300000002541030000906000
..........................................................................................................................................................................................................................................AACAAGATGCGTAACGGCCATACAT..................................................................252052.90105800201056000000000000
.........................................................................................................................................................................................................................................TAACAAGATGCGTAACGGCCATA.....................................................................232027.3054601000000456089000000
..........................................................................................................................................................................................................................................AACAAGATGCGTAACGGCC........................................................................19208.801760000000000176000000
.....................................................................................................................................................................................................................................GAA-TAACAAGATGCGTAACGGCCATA.....................................................................26205.751150090000000001060000
.....................................................................................................................................................................................................................................GAA-TAACAAGATGCGTAACGGC.........................................................................22204.8597070000000000090000
.........................................................................................................................................................................................................................................TAACAAGATGCGTAACGGCCATAC....................................................................24202.9559003000056000000000
..................................................................................................................................................................................................................................................................TTGGTTTGGCACTATGCAGCGCCACT.........................................2632.67800010001006000000
.....................................................................................................................................................................................................................................GAA-TAACAAGATGCGTAACGGCCATACA...................................................................28202.65530004200110000000000
..................................................................................................................................................................................................................................................................TTGGTTTGGCACTATGCAGCGCCAC..........................................2532.33700000000007000000
.....................................................................................................................................................................................................................................GAA-TAACAAGATGCGTAACGG..........................................................................21201.6032000000003200000000
..............................................................................................................................................................................................................................................................TACATTGGTTTGGCACTATGCAGCGC.............................................2631.00300000001002000000
..TGCCTGCGGAC--T-----------------------------------GAC--------TGCTGC.................................................................................................................................................................................................................................................................2111.00100000010000000000
..................................................................................................................................................................................................................................................................TTGGTTTGGCACTATGCAGCGCC............................................2331.00300002000001000000
........................................................................................................................................................................................................................................................................TGGCACTATGCAGCGCC............................................1730.67200000000002000000
...................................................................................................................................................................................................................................TAGAA-TAACAAGATGCGTAACGGCC........................................................................25200.5010001000000000000000
..........................................................................................................................................................................................................................................AACAAGATGCGTAACGGCCATACATT.................................................................26200.501000900000000010000
..........................................................................................................................................................................................................................AAAGAC-ACTAGAA-TAACAAGATGCGT...............................................................................26200.45900000090000000000
.............................................................................................................................................................................................................................GAC-ACTAGAA-TAACAAGATGCGTAACGGC.........................................................................29200.45900000009000000000
.....................................................................................................................................................................................................................................GAA-TAACAAGATGCGTAACGGCCAA......................................................................25200.40800000000008000000
....................................................................................................................................................................................................................................AGAA-TAACAAGATGCGTAACGGCC........................................................................24200.40808000000000000000
.........................................................................................................................................................................................................................................TAACAAGATGCGTAACGGCCA.......................................................................21200.35700000070000000000
..............................................................................................................................................................................................................................................................TACATTGGTTTGGCACTATGCAGCGCC............................................2730.33100000000100000000
...........................................................................................................................................................................................................................................................................CACTATGCAGCGCCACTTTTTTG...................................2330.33100000000000010000
........................................................................................................................................................................................................................................................................TGGCACTATGCAGCGCCACTT........................................2130.33100000000001000000
.......................................................................................................................................................................................................................................................................TTGGCACTATGCAGCGCCA...........................................1930.33100000000001000000
................................................................................................................................................................................................................................................................CATTGGTTTGGCACTATGCAGCGCCAC..........................................2730.33100000000001000000
................................................................................................................................................................................................................................................................................TGCAGCGCCACTTTTTTGGTG----------AAGACC................2730.33100000000001000000
..............................................................................................................................................................................................................................................................................TATGCAGCGCCACTTTTTTGGTG----------AAGAC.................2830.33100000000001000000
...........................................................................................................................................................................................................................................................................CACTATGCAGCGCCACTTTTTTGGA.................................2530.33100000001000000000
....................................................................................................................................................................................................................................................................GGTTTGGCACTATGCAGCGCCACT.........................................2430.33100010000000000000
..........................................................................................................................................................................................................................................................................GCACTATGCAGCGCCACTTT.......................................2030.33100000000001000000
.............................................................................................................................................................................................................................................................................CTATGCAGCGCCACTT........................................1630.33100000000001000000
.......................................................................................................................................................................................................................................................................TTGGCACTATGCAGCGCC............................................1830.33100000000001000000
................................................................................................................................................................................................................................................................CATTGGTTTGGCACTATGCAGCGCC............................................2530.33100000010000000000
................................................................................................................................................................................................................................................................................TGCAGCGCCACTTTTTTGGTG----------AAGA..................2530.33100000000100000000
..............................................................................................................................................................................................................................................................TACATTGGTTTGGCACTATGCAGCGCCA...........................................2830.33100000000001000000
............................................................................................................................................................................................................................................................................ACTATGCAGCGCCACTTT.......................................1830.33100000000001000000
...................................................................................................................................................................................................................................................................TGGTTTGGCACTATGCAGCGCCACTTT.......................................2730.33100010000000000000
............................................................................................................................................................................................................................................................................................TTTTTGGTG----------AAGACCAAATTTGCT--C....2530.33100000000001000000
...................................................................................................................................................................................................................................................................TGGTTTGGCACTATGCAGCGCCAC..........................................2430.33100000000001000000
...................................................................................................................................................................................................................................................................TGGTTTGGCACTATGCAGCGCCA...........................................2330.33100000000001000000
...................................................................................................................................................................................................................................TAGAA-TAACAAGATGCGTAACGGCCA.......................................................................26200.25500050000000000000
...........................................................................................................................................................................................................................................ACAAGATGCGTAACGGCCA.......................................................................19200.25500000000005000000
.............................................................................................................................................................................................................................................AAGATGCGTAACGGCCATACATTGGT..............................................................26200.20400000000004000000
..............................................................................................................................................................................................................TA-----TAACCAAAGAC-ACTAGAA-TAACAAGA....................................................................................2850.20100000001000000000
...........................................................................................................................................................................................................................................ACAAGATGCGTAACGGCCATACA...................................................................23200.20400000000004000000
.......................................................................................................................................................................................................................ACCAAAGAC-ACTAGAA-TAACAAGATGCGT...............................................................................29200.15300000000300000000
.........................................................................................................................................................................................................................................TAACAAGATGCGTAACGGC.........................................................................19200.15300300000000000000
....................................................................................................................................................................................................................................AGAA-TAACAAGATGCGTAACGGCCAT......................................................................26200.15300000000000030000
.....................................................................................................................................................................................................................TAACCAAAGAC-ACTAGAA-TAACAAGATGCGT...............................................................................31160.13200000020000000000
.........................................................................................................................................................................................................................................TAACAAGATGCGTAACGGCC........................................................................20200.10202000000000000000
.....................................................................................................................................................................................................................................GAA-TAACAAGATGCGTAACGGCCT.......................................................................24200.10200000000000020000
..........................................................................................................................................................................................................................AAAGAC-ACTAGAA-TAACAAGATGCGTA..............................................................................27200.10200000000020000000
.....................................................................................................................................................................................................................TAACCAAAGAC-ACTAGAA-TAACAAGA....................................................................................26160.06100000010000000000
.....................................................................................................................................................................................................................TAACCAAAGAC-ACTAGAA-TAACAAGAT...................................................................................27160.06100000000100000000
.........................................................................................................................................................................................................................CAAAGAC-ACTAGAA-TAACAAGATGCGT...............................................................................27200.05100000000001000000
.............................................................................................................................................................................................................................GAC-ACTAGAA-TAACAAGATGCGTAACGG..........................................................................28200.05100000000100000000
.......................................................................................................................................................................................................................ACCAAAGAC-ACTAGAA-TAACAAGAT...................................................................................25200.05100000010000000000
.........................................................................................................................................................................................................................................TAACAAGATGCGTAACGGCCATACATTGGT..............................................................30200.05100000001000000000
..................................................................................................................................................................................................................................................................TTGGTTTGGCACTATGC..................................................17200.05100000000001000000
..........................................................................................................................................................................................................................................AACAAGATGCGTAACGGCCATACATTG................................................................27200.05100100000000000000
..............................................................................................................................................................................................................................................................TACATTGGTTTGGCACTATGCAG................................................23200.05100000000000010000
..................................................................................................................................................................................................................................CTAGAA-TAACAAGATGCGTAACGGC.........................................................................25200.05100000000100000000
droSec2
AATGCCTGCGGAC--T-----------------------------------GAC--------TGCTGCCAAA---AGCCAGGCTTGTTTTCC-AAAAAGGTTACTAACTC----TTTACGTCTAGACTT---TAGACTGCTAGACTGCCCACATTTGCATAGGTAGCTTTCAAATTCTGCAGCTCATTCATC----------------------------------------------------------------------------------------------TTTTATT----------TCACC---AAACT-A--TCCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AATGCCTGCGGAC--T-----------------------------------GAC--------TGCTGCCAAA---AACCAGGCATGTTTTCC-AAAAAGGTTACTAACTC----TTTACGTCTAGACTT---TAGACTGCTAGACTGCCCATATTAGCATAGGTAGCTTTCAAATTCTGCAGCTCATTCATT--------------------------------------------------------------------------------------------------------------------------TTCT--ATTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................AGACTGCTAGACTGCCCATATT..........................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TCAAATTCTGCAGCTCATTCATT--------------------------------------------------------------------------------------------------------------------------TTC........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTAGCATAGGTAGCTTTCAAA.......................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TAGACTT---TAGACTGCTAGACTGCCC...............................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TC----TTTACGTCTAGACTT---TAGACTGC.........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............C--T-----------------------------------GAC--------TGCTGCCAAA---AACCAGGC..................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGCGGAC--T-----------------------------------GAC--------TGCTGCCAAA---AACCAGG...................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TCTAGACTT---TAGACTGCTAGACTGCCC...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CATGTTTTCC-AAAAAGGTTAC.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TAGCTTTCAAATTCTGCAGCT.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TAGACTT---TAGACTGCTAGACT...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AC--T-----------------------------------GAC--------TGCTGCCAAA---AACCAGGC..................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............C--T-----------------------------------GAC--------TGCTGCCAAA---AAC.......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AATGCCTGCGGAC--T-----------------------------------GAC--------TGCTGC.................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GTCTAGACTT---TAGACTGCTAGACTGCCCA..............................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AGACTT---TAGACTGCTAGACTGC.................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TAGACTT---TAGACTGCTAGACTGCCCATA............................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TTTCAAATTCTGCAGCTCATTCATT--------------------------------------------------------------------------------------------------------------------------...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGCTGCCAAA---AACCAGGCATGT..............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTA--------------------------------------------------------------------------------------TTT-AAAAAGGCCGCTGGTTC----ACTATCTATAGAGTAACATGGTGAACTGATTTATTTATATTAGAATAGTTTATTTTTAGTAGTTGCAAAT-----------TCTGTCCATGTCAGCAAAAAACCAAAGAC-ACTAGAA-TAATAAGATGCGTAACGGAAATACATTGGTTTTGCACTACGCAGCCAC--TTTTTTGGTG----------GCCGCAATAATTGCT--CTCTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................ACTAGAA-TAATAAGATGCGTA..............................................................................21200.1020000200
........................................................................................................................................................................................................................CCAAAGAC-ACTAGAA-TAAT........................................................................................19200.0511000000
droYak3
CTTTTA--G----------------------------ATTTTTATATCCGTTACTCGTAGAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------CGAGCAAAAAC-ATTATAA-TAACAAGATGCGTAACGGCCATACATTGGTTTGGCACTATGCAGCCAC--TTTTTTGGTG----------ACGACCAAAATTGCT--CTCTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................TTGGCACTATGCAGCCAC--TTTTTTGGTG----------A.....................2911.00100100000000
...................................................................................................................................................................................................................................TATAA-TAACAAGATGCGTAACGGCCA.......................................................................26200.10201000010000
....................................................................................................................................................................................................................................ATAA-TAACAAGATGCGTAACGGCC........................................................................24200.05100000010000
...................................................................................................................................................................................................................................TATAA-TAACAAGATGCGTAACGGCC........................................................................25200.05100100000000
droEug1
ATAGCCAGCAGAC-------------------------------------------------TGCTGCCAGA---AACATAATTTCTTTTCT-A-ACAAGTTACAAGCTT----AATGGGTCTAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATTTATCTCTTCC--T-----------------------------------TGCTC------TT-----------------------------------------------------------------------------------------------------------------------------------------------------CAACCAAAGACCAATATAATGTCTAAGATGAGTACCGACCATACGTTCGTTTTGCTATATGCAGCTCA--TTTTTTGGTG----------GCGACGAAAATCTCG--CTCTCSizeHit CountTotal NormTotal
No Reads
droTak1
CATCCA--C----------------------------CATCTACCA------TCCG------TT-----------------------------------------------------------------------------------------------------------------------------------------------------GAACCAAAGACCAATATAATCTCTAAGATGAGTAACGGCCATACATACGTTTTGCAATATGCAGCTCA--TTTTTTGGTG----------GCGACGAAAATCTCG--CTCTCSizeHit CountTotal NormTotal
No Reads
droEle1
AATGCCCCCAGTT--T-----------------------------------------------G---CCAGAAGAAACTAC-----ATTTTCTA-AAAGGTAGTCAACTTTACGTCTGCGTCTAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------SizeHit CountTotal NormTotal
No Reads
droRho1
AGACTGTTTGGATTTTTTACTTAGCTCTGTAATTCTGCATCTACAG----TTAGCTCTAGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAAAGACCAATATAAAATCTAAGATGCGTAACGCCCATACATTGGTTTTGCAATATGCAGTTCG--TTTTTTGGTG----------GCGACGAAAATTCCG--CTCTCSizeHit CountTotal NormTotal
No Reads
droFic1
AATGCCTGCAGAC--C-----------------------------------GAC--------AGCTTCGAGA---AACGACATTTCTTTTCT-A-AAAGGTAACAAACCTGATGTCTGCGTCTAGACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
CATACATACATAC--TTTG--------------------------------GGC--------AGCTTCGCGA--------TATTCTGCGCCT-AGCAAATTTACATATTT----CATACGCAC------------------------------------------------------------------------------------------ATACCAAAGAC-AATAGATTTAACAAGATGCCTTACGACCATACATTCGTTTTGCAATATGAGGCTGC--ATTTTTGATG----------GCAACGACAATCGCG------TSizeHit CountTotal NormTotal
No Reads
dp5
CCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCAAAGAC-AATATAAATAGTAAGATGAGTAACGACCATGCATTTCAATGGTCATATGCAGCGAGG-TTTTTCGGAA----------GAGACGAAATACTCGCTGTC-TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................TGCAGCGAGG-TTTTTCGGAA----------GAGAC.................2511.0010000001000
droPer2
CCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCAAAGAC-TATATAAATAGTAAGATGAGTAACGACCATGCATTTCAATGGTCATATGCAGCGAGG-TTTTTCGGAA----------GAGACGAAATACTCGCTGTC-TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCATAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTACCAAAGAC-AATATAAACACTAAGATGAGTAACG-CAATACAACAAAATGCTACTATGCAGCTTAA-TTTTTTGAAAATTGAGAACGAAAACGAAA-TCT-GT-AGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................TGAGAACGAAAACGAAA-TCT-GT-AGCAT27204.70940000000000000000000000000940000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGAGTAACG-CAATACAACAAAATGCT.........................................................2611.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................TAAACACTAAGATGAGTAACG-CAATACA...................................................................2811.001000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................................................................................................TAAGATGAGTAACG-CAATACAACAAA..............................................................2611.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................TAAACACTAAGATGAGTAACG-CAA.......................................................................2411.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................TAAACACTAAGATGAGTAACG-CAAT......................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................TAAGATGAGTAACG-CAATACAACAAAA.............................................................2711.001000010000000000000000000000000000000000000000000000000000000000
...TAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTACCAA.........................................................................................................2521.002000000000000000000000000010000001000000000000000000000000000000
.....................................................................................................................................................................................................................................TAAACACTAAGATGAGTAACG-CAATA.....................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGCAGCTTAA-TTTTTTGAAAATTGA...........................2560.674000001000000100000000000002000000000000000000000000000000000000
TCATAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTACCA..........................................................................................................2720.501000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGAACGAAAACGAAA-TCT-GT-A....23200.408000000000000000000000000080000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGCAGCTTAA-TTTTTTGAAAATTG............................2460.332001000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AATGCTACTATGCAGCTTAA-..........................................2040.251000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CGAAAACGAAA-TCT-GT-AGCA.20200.204000000400000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TACTATGCAGCTTAA-TTTTTTGAAAAT..............................2750.201000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................ACTATGCAGCTTAA-TTTTTTGAAAAT..............................2650.201000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGAACGAAAACGAAA-TCT-G.......21200.204000000000000000000000000000000000040000000000000000000000000000
................................................................................................................................................................................................................................................................................TGCAGCTTAA-TTTTTTGAAAATTGAG..........................2660.171000000000000000000000000001000000000000000000000000000000000000
...TAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTACC...........................................................................................................23200.102000000000000000000000000010000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AGAACGAAAACGAAA-TCT-GT-AGCAT25200.102000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................................................................................................................A-----TTACCAAAGAC-AATATAAACACTA.......................................................................................25130.081001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAAACACTAAGATGAGTAACG-CAT.......................................................................24160.061000000000000000000000000000000000001000000000000000000000000000
...TAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TT..............................................................................................................20200.051000010000000000000000000000000000000000000000000000000000000000
...TAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTAC............................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTGAGAACGAAAACGAAA-TCT-GT-AGCAT28200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................AAACACTAAGATGAGTAACG-C.........................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGAACGAAAACGAAA-TCT-GT-AG...24200.051000000000000000000000000000000100000000000000000000000000000000
TCATAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTAC............................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................AAATTGAGAACGAAAACGAAA-TCT-GT-.....26200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................A-TTTTTTGAAAATTGAGAACGAA....................23200.051000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CGAAAACGAAA-TCT-GT-AGCAT21200.051000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................................................ATACAACAAAATGCTACTATG...................................................21200.051000000000000000010000000000000000000000000000000000000000000000
TCATAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................CCAAAGAC-AATATAAACACTAAGATG..................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................AAAGAC-AATATAAACACTAAGATGAG................................................................................26200.051000000000000000000000001000000000000000000000000000000000000000
...TAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----T...............................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TTTTTGAAAATTGAGAACGAAAACG................25200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAGAACGAAAACGAAA-TCT-G.......20200.051000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................ATATAAACACTAAGATGAGTAACG-C.........................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.CATAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----T...............................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAAACACTAAGATGAGTAACG-C.........................................................................22200.051000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AAAGAC-AATATAAACACTAAGAT...................................................................................23200.051000000000000000000000000000100000000000000000000000000000000000
.....T---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTAC............................................................................................................20200.051000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................ATTGAGAACGAAAACGAAA-TCT-GT-.....24200.051000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TTGAAAATTGAGAACGAAAA..................20200.051000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTGAGAACGAAAACGAAA-TCT-GT-AGC..26200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................C-AATATAAACACTAAGATGAG................................................................................21200.051010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TTTGAAAATTGAGAACGAAAACGAAA-TC..........28200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TACAACAAAATGCTACTATGCAGCT..............................................25200.051000000000000000000000000000001000000000000000000000000000000000
TCATAT---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCCGTGGTA-----TTACC...........................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGAGAACGAAAACGAAA-TC..........19200.051000000000000000000000000010000000000000000000000000000000000000
droGri2
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:01 PM