ID:

dsi_8640

 Coordinate:

x:18506558-18506767 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.7 -25.5 -24.7

Flybase annnotation

exon [x_18506768_18506899_+]; CDS [x_18506768_18506899_+]; exon [x_18506404_18506557_+]; CDS [x_18506404_18506557_+]; intron [x_18506558_18506767_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGAGTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGTAAAGCTCAGATGGTTTGGACTAATTTCGCAAAGGTGATAACTGTGTGCTTTCAAGTGCGTTTTACAACACTAAACCATTCAAAATGCTGTGTTGCATACTAGTTGTCACCTATCATATGTTTTACTTACTTATGCTCTGATCCTCTTTCATCCACATCTTTGTGATCCTATATATCAATCCTATATCATTTCATTGATCCACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
***********************************************************************.................((((((((((((((((...((...(((((((.................)))))))..))..)))))).))))))))))************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M025
embryo
 GSM343915
embryo
 M024
male body		 M023
head
...............................................CAGGTAAGTAAAGCTCAGATGGTTTG............................................................................................................................................................................................................................................. 26 0 1 12.00 12 3 9 0 0 0 0 0 0 0 0 0
...............................................CAGGTAAGTAAAGCTCAGATGGTT............................................................................................................................................................................................................................................... 24 0 1 12.00 12 6 5 0 1 0 0 0 0 0 0 0
...............................................CAGGTAAGTAAAGCTCAGATGGTTTGGAC.......................................................................................................................................................................................................................................... 29 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0
..............................................TCAGGTAAGTAAAGCTCAGATGGTT............................................................................................................................................................................................................................................... 25 0 1 3.00 3 0 1 1 0 0 0 1 0 0 0 0
...........TTAGTTTTATTATAGCCGCCATAGCGA................................................................................................................................................................................................................................................................................ 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...............................................CAGGTAAGTAAAGCTCAGATGGTTTGGA........................................................................................................................................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
...............................................CAGGTAAGTAAAGCTCAGATGGT................................................................................................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................TCAGGTAAGTAAAGCTCAGATGG................................................................................................................................................................................................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.................................AGCGAGTATTTTCTCAGGTAAGTCAGC.......................................................................................................................................................................................................................................................... 27 3 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...............................................CAGGTAAGTAAAGCTCAGATGGTTT.............................................................................................................................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................GTATAGCTCAGCTGGTTTAGA........................................................................................................................................................................................................................................... 21 3 4 1.50 6 0 0 0 0 4 0 0 0 0 1 1
.......................................................................TGGACTAATTTCGCAAAGGTGATAAC..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................TGCTGTGTTGCATACTAGTTGTCACC................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................GTGATAACTGTGTGCTTTCAAGTGCGC.................................................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TATATCATTTCATTGATCCACAGGCGCC............................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................AAGCTCAGATGGTTTGGACTA........................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAACTGTGTGCTTTCAAGT...................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................TTTTTCAGGTAAGTAAAGCTCAGATGGT................................................................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................TTTGGACTAATTTCGCAAAGGTGATAAC..................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TCATTTCATTGATCCACAGGCGCCT............................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................TGGACTAATTTCGCAAAGGTGATAACTGTG................................................................................................................................................................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGTGCTTTCAAGTGCGTTTTACAACAC........................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TACTTATGCTCTGATC................................................................................................................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................TAGCGAGTATTTTCTCAGGTAAGTCAGC.......................................................................................................................................................................................................................................................... 28 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................TGCTGTGTTGCATACTAGTTGTCACCTA.............................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................AAGGTGATAACTGTGTGCTTTCAAGTG..................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................................CAGGTAAGTAAAGCTCAGATGG................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................TCAGATGGTTTGGACTAATTTCGCAA............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................TTGGACTAATTTCGCAAAGGT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................TAGCGAGTATTTTCTCAGGTAAGTCAG........................................................................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCCTCTTTCATCCACATCTTTGTGATCC...................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................TTCTCAGGTAAGTAAAGCTCAGATGGT................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................TGGCGTTCGTGTGCCACACACA......... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................GCGAGTATTTTCTCAGGTAAG............................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................AGTAAAGCTCAGATGGTTTGGACTA........................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................TCAGGTAAGTAAAGCTCAGATGGTTT.............................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................TTCTCAGGTAAGTAAAGCTCAGATGGTT............................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TGGCGTTCGTGTGCCACACACATCCGG.... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................GTGATAACTGTGTGCTTTCAAGTGC.................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TAGCCGCCATAGCGAGTATTTTCTCAGG................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................CTCAGGTAAGTAAAGCTCAGATGGTT............................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................GTATAGCTCAGTTGGTTTAGA........................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
......................................................GTATAGCTCAGCTGGTTTAG............................................................................................................................................................................................................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................ACAGAGTTTGGCGTT........................ 15 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................AGTATAGCTCAGTTGGT................................................................................................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
............................................TCTCAGGTTGGTAAGGCTC....................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................AAGTGATGACCGTGTGCTT............................................................................................................................................................................................................ 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTTTTACTTACTGATGA....................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GCCTCACTAATAATCAAAATAATATCGGCGGTATCGCTCATAAAAGAGTCCATTCATTTCGAGTCTACCAAACCTGATTAAAGCGTTTCCACTATTGACACACGAAAGTTCACGCAAAATGTTGTGATTTGGTAAGTTTTACGACACAACGTATGATCAACAGTGGATAGTATACAAAATGAATGAATACGAGACTAGGAGAAAGTAGGTGTAGAAACACTAGGATATATAGTTAGGATATAGTAAAGTAACTAGGTGTCCGCGGACGATACGTCTCAAACCGCAAGCACACGGTGTGTGTAGGCCGAGC
************************************************************************************************************************************************.................((((((((((((((((...((...(((((((.................)))))))..))..)))))).))))))))))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 GSM343915
embryo
 M023
head
......................................................................................................................ATGCTGTGAGTTGGTA................................................................................................................................................................................ 16 2 20 36.00 720 706 0 0 0 14 0 0 0 0
......................................................................................................................ATGTTGTGAGTTGGTA................................................................................................................................................................................ 16 1 4 7.25 29 4 12 9 2 1 1 0 0 0
......................................................................................................................ATGTTGGGATTTGGTA................................................................................................................................................................................ 16 1 4 5.25 21 2 8 8 0 0 3 0 0 0
......................................................................................................................ATGTTGGGATTTGGT................................................................................................................................................................................. 15 1 5 2.40 12 4 5 1 1 1 0 0 0 0
......................................................................................................................ATGTTGTGATTTGGTAT............................................................................................................................................................................... 17 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGGTGTAGAAACACTAGGATATATAGAT............................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................TCGCTCATAAAAGAGTCCATT................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................ATAGTAAAGTAACTAGGTGTC.................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................AATGCTGTGATTTGGT................................................................................................................................................................................. 16 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................ATGCTGTGATTTGGTA................................................................................................................................................................................ 16 1 4 0.50 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGTGAATAGTAAACAAATTGAAT.............................................................................................................................. 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................................................................................................ATGTTGGGAGTTGGTAAG.............................................................................................................................................................................. 18 2 5 0.40 2 0 2 0 0 0 0 0 0 0
......................................................................................................................ATGTTGTGATTTGGTATA.............................................................................................................................................................................. 18 2 13 0.38 5 0 1 2 0 0 0 0 1 1
......................................................................................................................ATGTTGGGAGTTGGTACGT............................................................................................................................................................................. 19 3 13 0.31 4 0 0 0 0 0 1 3 0 0
............................................CGAGTCCAATGATTTCGA........................................................................................................................................................................................................................................................ 18 3 20 0.30 6 0 0 0 0 6 0 0 0 0
.....................................................................................................................AATGCTGTGAGTTGGTA................................................................................................................................................................................ 17 2 10 0.30 3 3 0 0 0 0 0 0 0 0
...................................................................................................................AAAATGTTGGGAGTTGGTAA............................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 1 0 0 0
......................................................................................................................ATGTTGTGAGTTGGT................................................................................................................................................................................. 15 1 20 0.25 5 0 2 3 0 0 0 0 0 0
..................................................................................................................CAAGATGTTGGGAGTTGGTAA............................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................GATATATAGTCAGGATGT..................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TAGGAGAAAGTGGGAGTA................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 1 0
..........................................................................................................AGGTCACGCAAAATGGTG.......................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0
....................................................................................................................AAATGTTGGGAGTTGGTAA............................................................................................................................................................................... 19 2 6 0.17 1 0 0 0 0 0 1 0 0 0
......................................................................................................CAGGAGTTCACGCAAAATG............................................................................................................................................................................................. 19 3 20 0.15 3 0 0 0 0 0 0 0 0 3
......................................................................................................................ATGTTGGGATTTGGTAC............................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................AGGAGAACGTAGGTG................................................................................................... 15 1 9 0.11 1 0 1 0 0 0 0 0 0 0
..................................................................................................................AAAAATGTTGGGAGTTGGTAA............................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................TGTTGGGATTTGGTA................................................................................................................................................................................ 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0
..........................................................................................................AGGTCACGCAAAATG............................................................................................................................................................................................. 15 1 12 0.08 1 0 0 0 1 0 0 0 0 0
......................................................................................................................ATGCTGTGAGTTGGTAA............................................................................................................................................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................TGTTGTGAGTTGGTA................................................................................................................................................................................ 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0
......................................................................................................................ATGTTGTGAGTTGGTAAA.............................................................................................................................................................................. 18 2 13 0.08 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................ACAAAATGAGTGAATACAAG..................................................................................................................... 20 2 14 0.07 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................AAGTGACTCGATGTCCGCG.............................................. 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0
......................................................................................................................ATGTTGGGAGTTGGTAATT............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
......................................................................................................................ATGTTGAGAGTTGGTACGT............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:18506508-18506817 + dsi_8640 CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGTAA---AGCT-----------------------------------CAGATGGTTTGGACTAATTTC-GCA--AAGGTGATA-------------------------------A---CTG---------TGTGCTTTCAAGTGCGTTTTACAACACTAAAC--CATTCAAAATGCTGTGTTGCA-TACTAGTTGTCACCTAT--CATATGTTTTACTTACTT----AT--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT---------------------------------GATCCT-CTTTCATCCACATCTTTGTG-----------------------------------------ATCCTATATAT----CAAT------C---------CTATATCATTTCA----------------------TTGATC--------------------------------------CACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droSec2 scaffold_8:1892077-1892380 + CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGT-------------------------------------------------GGCTTGGACTAATTTC-GCA--AAGGTGATA-------------------------------A---CTG---------TGTGCTTTCAAGTGCGCTTTACAACACTAAAC--CATTCAAAATGCAGTGTTGCA-TACTAGTTGTCACTTAT--CATATGTTTTACTTACTT----AT--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTG----------GC------AGC-ACT-AG-G---ATCCT-CTT-CATCCACATCTTTGTG-----------------------------------------ATCCTATATAT------------------------CTATATCATTTCA----------------------TTGATC--------------------------------------CACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
dm3 chrX:19617040-19617365 + CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGCATTTTCTCAGGTGAGTCA----GCT-----------------------------------CAGATTGTTTGGACTAATTTCTACA--AAGGTGATG-------------------------------AAAGCTA---------TGTGCTTTCAAGTGTGCTTTACAACACTAAAC--CATTGAAAATGTGATGTTGCACTACTTGTTGTCACCTATCTCATATGTCTCACTTACTATAGAAT--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTG----------GCATTATGAGC-ACT-AA-G---ATCCTTCTTTCATCCACATCTTTGTG-----------------------------------------ATCC-------------------------------CTATATTAATTCA----------------------TTGATC--------------------------------------CACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droEre2 scaffold_4690:9839206-9839438 + CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGTTA----GCT-------------TATTGTTTGCTCTGGCTCT-----------------AAAT---------AAAAATTTA-------------------------------G---CAA---------TGCCACTT-GCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACTTTGTA---AACCT-AACTCCTCCACATCTTGGCG-----------------------------------------ATCCTGTATAAATCTT--------------------TATATCCATTCA----------------------CTGATC--------------------------------------CACAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droYak3 X:11728487-11728748 - CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTGAGTTA----GC-------------------------------------TGATTGATTGGACTAATGCC-GCA--AAGATGATA-------------------------------A---CTG---------T----------------------------AACCGCACTCCAAATGCAA----------------------------------TTTACTTACTG----AC--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTG----------TC------AGCTACTTAGTG---CACCT-ATTT-CTGCGCATCTCTCTG-----------------------------------------ATCCAATGTATATCTT--------------------TATATCGATTCA----------------------CTGATC--------------------------------------CACAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droEug1 scf7180000409230:724890-725238 - CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAATCTAATGAGCTTCTACTATTTGAAG---------------------ATGATTGATTGAACTAATTTT-GAA--A--GTGATTCTTGGAT-----GATGATATATA----ATGGA-AGAAATAATTAATAT----------------------------AAA----------------------------------------------------TACTTACTT----AA--------A-----CTGA---------------------------TATTTCCC-----------------------------------------------------------------------GAGTGATAAATACATTTTTGAGTCCAGCTAGTCAAAGTTTCAAGAAATTGGTA------------------------------------------CATTC--TCTCAGTCTAAG--------------------TTGAC-------------------------------------------TATTTCCAAG------------ATATATTATATATGTA--------------------AATTCCATTTTC----------------------CTGATC--------------------------------------CATAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACTTCCGGCTCG
droBia1 scf7180000302041:476782-476905 - CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGCCA----GCTCCC----------------------------TCTACTGATTGATTGGACCAATTT--GTG--AAGAATGTC-------------------------------A---CAA---------TGTAAATT-AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATTATA
droTak1 scf7180000414393:109956-110379 + CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGCAA----GCTGCTTCCTCCTGAAG-----------------TCAACTGATTGATTGGACCAAGTT---------------A-------------------------------A---TTG---------T----------------------------AA--------------------------------------------------------TTATTATAGAATTTCAATTTGCAGTACTGAAATCAAAATCAAGATTATTTTTATCTCTATTTCACATCATTTTATCTTGTAAACAAATTTGAGGATTTTTTTGTCTTGAATTCAAGAACGTTTTTTTTAATGATTTAGGTGGTAAA-----TT------------------------------------TTGAGAACAGTTGACC-----------------------------------------------------------------TTGGCTTT-CTTTC---G--TTCTTT--GGTCCAGTCTTTCATTTGATTTCCCTCAAGATCACTTTGTGGATCCTATATATATTCC--------------------GATTCCGAT--------------------ATTTAATGCCC--------------------------------------CACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droEle1 scf7180000491023:652602-652682 + ACCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------T---------CTAATCCCATCCG----------------------ATGATC--------------------------------------AACAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droRho1 scf7180000777873:10496-10627 - GTTC-------C-----------------------------------ATTCACTCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCCCT-CTCCC---A--GTCCTTGAG-----------------------------------------GTCCAATCCAA--------------TCTGACAAACCCA-TCCGATCTG----------------------ATGATC--------------------------------------CACAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droFic1 scf7180000454073:1898576-1898693 + TGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT-CTTTGATTGACACCA---------------------------------------------------------------AATGGTATT---------CTAATCCACTCTGAA---------TTCAATTTTGGTTGATC--------------------------------------CGCAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droKik1 scf7180000302592:1631368-1631711 - CGGT-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATATTCTCAGGTAAGAGA----GAA-------------GATGGGAGGACGTGGCTCTCGACAGGCTAATTGGACTGATTTG-GAACCAAGAGGATGCTGGGATTAATTGGGGATTTGTACAATATGGAAAGGAA---------TGTAAAAT-AA-------------------AA--AATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTGGTATTGAAAGCAGCAGAACACAGTCCAGTTATCCTGTTATCCTTTCATTCTATATCAAGCCGAG--------------------TTGATCCT-CTTC-C--TGCATCTT---------------------------------------------ATCCT-------TATCAAT------T---------CT----------GGT---------------GT----CTTCC--------------------------------------TGTAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCGCACACATCCGGCTCG
droAna3 scaffold_13337:22617589-22617692 + CCGGTCCTGCTGTAACCATATCCTTTCTGATCGCAGCCATTGCGTCGGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGGTATCTGCTATGCCGAGTTTGCAGCACGCGTTCCCAAG---GCAGGAAGT
droBip1 scf7180000396610:24561-24617 + CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTATGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:979147-979343 + CGGT-------GTGATTATTAGTTTTATTATAGCTGCCATAGCGAGTATTTTCTCAGGTAAGA----------------------------------------------GATCGATTCGATTGATAT---------------------------------------------------CTG---------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTGTTCAACGTTCT-------ATTCTCCATATATATTTTTTGATATACATTTGTACTCTTGGACTTAATAGGCGCTTGCTATGCGGAGTTTGGCGTTCGTGTGCCACATACATCCGGCTCG
droPer2 scaffold_30:219739-219935 - CGGT-------GTGATTATTAGTTTTATTATAGCTGCCATAGCGAGTATTTTCTCAGGTAAGT----------------------------------------------GATCGATTCGAGTGATAT---------------------------------------------------CTG---------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTGTTCAACGTTCT-------ATTCTCCATATATATTTTTTGATATACATTTGTACTCTTGGACTTAATAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droWil2 scf2_1100000004963:1740739-1740818 + TCGA-------TCGATTATCATTTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCC--------------------------------------ATTAGGCGCTTGCTATGCGGAATTTGGCGTTCGTGTGCCACACACATCCGGCTCG
droVir3 scaffold_13042:3559391-3559449 + CGGC-------GTCGTTATTAGTTTTATTATAGCCGCCATTGCGAGCATATTCTCAGGTGAGTGA----A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6308:781879-781976 + CATC-------TAGATAAT-------------GCCACTATA-------------------------------------------------------------------------------------------------------------------------------------------------------TATCCT-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGTATAT-------------------------------------------------------------------------------------------------------------------------CCT--------------------------------------TGTAGGCGCTTGCTATGCGGAATTTGGCGTTCGAGTGCCACACACTTCCGGCTCA
droGri2 scaffold_15203:2734391-2734461 + TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------ATCCTATGTA----------------------------------------------------------------TT--------------------------------------TGCAGGCGCGTGCTATGCGGAATTTGGCGTTCGTGTGCCACACACATCCGGCTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGTAA---AGCT-----------------------------------CAGATGGTTTGGACTAATTTC-GCA--AAGGTGATA-------------------------------A---CTG---------TGTGCTTTCAAGTGCGTTTTACAACACTAAAC--CATTCAAAATGCTGTGTTGCA-TACTAGTTGTCACCTAT--CATATGTTTTACTTACTT----AT--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT---------------------------------GATCCT-CTTTCATCCACATCTTTGTG-----------------------------------------ATCCTATATAT----CAAT------C---------CTATATCATTTCA----------------------TTGATC--------------------------------------CACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................CAGGTAAGTAA---AGCT-----------------------------------CAGATGGTTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26112.001200000030900000000
......................................................CAGGTAAGTAA---AGCT-----------------------------------CAGATGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24112.001200000060510000000
......................................................CAGGTAAGTAA---AGCT-----------------------------------CAGATGGTTTGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2917.00700000070000000000
.....................................................TCAGGTAAGTAA---AGCT-----------------------------------CAGATGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000000101010000
..................TTAGTTTTATTATAGCCGCCATAGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000020000000
......................................................CAGGTAAGTAA---AGCT-----------------------------------CAGATGGTTTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000010100000000
......................................................CAGGTAAGTAA---AGCT-----------------------------------CAGATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000000000
.....................................................TCAGGTAAGTAA---AGCT-----------------------------------CAGATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000000200000000
......................................................CAGGTAAGTAA---AGCT-----------------------------------CAGATGGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000200000000
....................................................................................................................TGGACTAATTTC-GCA--AAGGTGATA-------------------------------A---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.........................................................................................................................................................................................................................................TGCTGTGTTGCA-TACTAGTTGTCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.........................................................................................................................................GTGATA-------------------------------A---CTG---------TGTGCTTTCAAGTGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCATTTCA----------------------TTGATC--------------------------------------CACAGGCGCC.............................................2811.00100000000001000000
................................................................A---AGCT-----------------------------------CAGATGGTTTGGACTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.............................................................................................................................................TA-------------------------------A---CTG---------TGTGCTTTCAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..................................................................................................................TTTGGACTAATTTC-GCA--AAGGTGATA-------------------------------A---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTCA----------------------TTGATC--------------------------------------CACAGGCGCCT............................................2511.00100000000000100000
....................................................................................................................TGGACTAATTTC-GCA--AAGGTGATA-------------------------------A---CTG---------TG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
..............................................................................................................................................................................................TGTGCTTTCAAGTGCGTTTTACAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
......................................................................................................................................................................................................................................................................................TACTT----AT--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT---------------------------------GATC.........................................................................................................................................................................................................................................1611.00100000000001000000
.........................................................................................................................................................................................................................................TGCTGTGTTGCA-TACTAGTTGTCACCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
......................................................................................................................................AAGGTGATA-------------------------------A---CTG---------TGTGCTTTCAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
......................................................CAGGTAAGTAA---AGCT-----------------------------------CAGATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000100000000
.......................................................................T-----------------------------------CAGATGGTTTGGACTAATTTC-GCA--A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...................................................................................................................TTGGACTAATTTC-GCA--AAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT-CTTTCATCCACATCTTTGTG-----------------------------------------ATCC.....................................................................................................................................................................2811.00100010000000000000
..................................................TTCTCAGGTAAGTAA---AGCT-----------------------------------CAGATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGTTCGTGTGCCACACACA.........2211.00100000000001000000
.........................................GCGAGTATTTTCTCAGGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
............................................................AGTAA---AGCT-----------------------------------CAGATGGTTTGGACTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.....................................................TCAGGTAAGTAA---AGCT-----------------------------------CAGATGGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..................................................TTCTCAGGTAAGTAA---AGCT-----------------------------------CAGATGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGTTCGTGTGCCACACACATCCGG....2711.00100000000001000000
.........................................................................................................................................GTGATA-------------------------------A---CTG---------TGTGCTTTCAAGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
..............................TAGCCGCCATAGCGAGTATTTTCTCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
....................................................CTCAGGTAAGTAA---AGCT-----------------------------------CAGATGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
droSec2
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGT-------------------------------------------------GGCTTGGACTAATTTC-GCA--AAGGTGATA-------------------------------A---CTG---------TGTGCTTTCAAGTGCGCTTTACAACACTAAAC--CATTCAAAATGCAGTGTTGCA-TACTAGTTGTCACTTAT--CATATGTTTTACTTACTT----AT--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTG----------GC------AGC-ACT-AG-G---ATCCT-CTT-CATCCACATCTTTGTG-----------------------------------------ATCCTATATAT------------------------CTATATCATTTCA----------------------TTGATC--------------------------------------CACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA----------------------TTGATC--------------------------------------CACAGGCGCC.............................................2011.0011000
.............................................GTATTTTCTCAGGTAAGT-------------------------------------------------GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................................................................................TTGCA-TACTAGTTGTCACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCGTTCGTGTGCCACACACATC.......2611.0011000
dm3
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGCATTTTCTCAGGTGAGTCA----GCT-----------------------------------CAGATTGTTTGGACTAATTTCTACA--AAGGTGATG-------------------------------AAAGCTA---------TGTGCTTTCAAGTGTGCTTTACAACACTAAAC--CATTGAAAATGTGATGTTGCACTACTTGTTGTCACCTATCTCATATGTCTCACTTACTATAGAAT--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTG----------GCATTATGAGC-ACT-AA-G---ATCCTTCTTTCATCCACATCTTTGTG-----------------------------------------ATCC-------------------------------CTATATTAATTCA----------------------TTGATC--------------------------------------CACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................GATGTTGCACTACTTGTTGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAATTCA----------------------TTGATC--------------------------------------CACAGGCGCC.............................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAGTTTGGCGTTCGTGTGCCACA.............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
.....................................................TCAGGTGAGTCA----GCT-----------------------------------CAGATTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTCTCAGGTGAGTCA----GCT-----------------------------------CAGATTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTTTGGCGTTCGTGTGCCACA.............2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCAGAGTTTGGCGTTCGTGTGCCAC..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTGTGCCACACACATCCGGCTCG2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................ATTTTCTCAGGTGAGTCA----GCT-----------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTTTGGCGTTCGTGTG..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................TCA----GCT-----------------------------------CAGATTGTTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCAGAGTTTGGCGTTCGTGTGCCACA.............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................TGTTGTCACCTATCTCATATGTCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAGTTTGGCGTTCGTGTGCACA..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATTCA----------------------TTGATC--------------------------------------CACAGGCGCC.............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATC--------------------------------------CACAGGCGCCTGCTATGCAGAG.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............TTATTAGTTTTATTATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TACTATAGAAT--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTG----------GCAT...............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GATGTTGCACTACTTGTTGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GAGCATTTTCTCAGGTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CTTTCAAGTGTGCTTTACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGTTA----GCT-------------TATTGTTTGCTCTGGCTCT-----------------AAAT---------AAAAATTTA-------------------------------G---CAA---------TGCCACTT-GCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACTTTGTA---AACCT-AACTCCTCCACATCTTGGCG-----------------------------------------ATCCTGTATAAATCTT--------------------TATATCCATTCA----------------------CTGATC--------------------------------------CACAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTGAGTTA----GC-------------------------------------TGATTGATTGGACTAATGCC-GCA--AAGATGATA-------------------------------A---CTG---------T----------------------------AACCGCACTCCAAATGCAA----------------------------------TTTACTTACTG----AC--------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTG----------TC------AGCTACTTAGTG---CACCT-ATTT-CTGCGCATCTCTCTG-----------------------------------------ATCCAATGTATATCTT--------------------TATATCGATTCA----------------------CTGATC--------------------------------------CACAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTGGCGTTCGTGTGC.................1911.00100100000000
droEug1
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAATCTAATGAGCTTCTACTATTTGAAG---------------------ATGATTGATTGAACTAATTTT-GAA--A--GTGATTCTTGGAT-----GATGATATATA----ATGGA-AGAAATAATTAATAT----------------------------AAA----------------------------------------------------TACTTACTT----AA--------A-----CTGA---------------------------TATTTCCC-----------------------------------------------------------------------GAGTGATAAATACATTTTTGAGTCCAGCTAGTCAAAGTTTCAAGAAATTGGTA------------------------------------------CATTC--TCTCAGTCTAAG--------------------TTGAC-------------------------------------------TATTTCCAAG------------ATATATTATATATGTA--------------------AATTCCATTTTC----------------------CTGATC--------------------------------------CATAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACTTCCGGCTCGSizeHit CountTotal NormTotal
No Reads
droBia1
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGCCA----GCTCCC----------------------------TCTACTGATTGATTGGACCAATTT--GTG--AAGAATGTC-------------------------------A---CAA---------TGTAAATT-AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATTATASizeHit CountTotal NormTotal
No Reads
droTak1
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTAAGCAA----GCTGCTTCCTCCTGAAG-----------------TCAACTGATTGATTGGACCAAGTT---------------A-------------------------------A---TTG---------T----------------------------AA--------------------------------------------------------TTATTATAGAATTTCAATTTGCAGTACTGAAATCAAAATCAAGATTATTTTTATCTCTATTTCACATCATTTTATCTTGTAAACAAATTTGAGGATTTTTTTGTCTTGAATTCAAGAACGTTTTTTTTAATGATTTAGGTGGTAAA-----TT------------------------------------TTGAGAACAGTTGACC-----------------------------------------------------------------TTGGCTTT-CTTTC---G--TTCTTT--GGTCCAGTCTTTCATTTGATTTCCCTCAAGATCACTTTGTGGATCCTATATATATTCC--------------------GATTCCGAT--------------------ATTTAATGCCC--------------------------------------CACAGGCGCCTGCTATGCAGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotal
No Reads
droEle1
ACCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------T---------CTAATCCCATCCG----------------------ATGATC--------------------------------------AACAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotal
No Reads
droRho1
GTTC-------C-----------------------------------ATTCACTCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCCCT-CTCCC---A--GTCCTTGAG-----------------------------------------GTCCAATCCAA--------------TCTGACAAACCCA-TCCGATCTG----------------------ATGATC--------------------------------------CACAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotal
No Reads
droFic1
TGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT-CTTTGATTGACACCA---------------------------------------------------------------AATGGTATT---------CTAATCCACTCTGAA---------TTCAATTTTGGTTGATC--------------------------------------CGCAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotal
No Reads
droKik1
CGGT-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATATTCTCAGGTAAGAGA----GAA-------------GATGGGAGGACGTGGCTCTCGACAGGCTAATTGGACTGATTTG-GAACCAAGAGGATGCTGGGATTAATTGGGGATTTGTACAATATGGAAAGGAA---------TGTAAAAT-AA-------------------AA--AATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTGGTATTGAAAGCAGCAGAACACAGTCCAGTTATCCTGTTATCCTTTCATTCTATATCAAGCCGAG--------------------TTGATCCT-CTTC-C--TGCATCTT---------------------------------------------ATCCT-------TATCAAT------T---------CT----------GGT---------------GT----CTTCC--------------------------------------TGTAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCGCACACATCCGGCTCGSizeHit CountTotal NormTotal
No Reads
droAna3
CCGGTCCTGCTGTAACCATATCCTTTCTGATCGCAGCCATTGCGTCGGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGGTATCTGCTATGCCGAGTTTGCAGCACGCGTTCCCAAG---GCAGGAAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGCCGAGTTTGCAGCACGC.....................2212.002020000
...................ATCCTTTCTGATCGCAGCCATTGCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002100001
...................................GCCATTGCGTCGGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC....................................................2012.002010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCCCAAG---GCAGGA...1811.001010000
..................................AGCCATTGCGTCGGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC....................................................2111.001100000
.................................................TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGGTATCTGCTATGCC....................................2211.001010000
............................GATCGCAGCCATTGCGTCGGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.............................ATCGCAGCCATTGCGTCGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
CGGA-------GTGATTATTAGTTTTATTATAGCCGCCATAGCGAGTATTTTCTCAGGTATGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CGGT-------GTGATTATTAGTTTTATTATAGCTGCCATAGCGAGTATTTTCTCAGGTAAGA----------------------------------------------GATCGATTCGATTGATAT---------------------------------------------------CTG---------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTGTTCAACGTTCT-------ATTCTCCATATATATTTTTTGATATACATTTGTACTCTTGGACTTAATAGGCGCTTGCTATGCGGAGTTTGGCGTTCGTGTGCCACATACATCCGGCTCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CGGT-------GTGATTATTAGTTTTATTATAGCTGCCATAGCGAGTATTTTCTCAGGTAAGT----------------------------------------------GATCGATTCGAGTGATAT---------------------------------------------------CTG---------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTGTTCAACGTTCT-------ATTCTCCATATATATTTTTTGATATACATTTGTACTCTTGGACTTAATAGGCGCCTGCTATGCGGAGTTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCGA-------TCGATTATCATTTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCC--------------------------------------ATTAGGCGCTTGCTATGCGGAATTTGGCGTTCGTGTGCCACACACATCCGGCTCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CGGC-------GTCGTTATTAGTTTTATTATAGCCGCCATTGCGAGCATATTCTCAGGTGAGTGA----A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CATC-------TAGATAAT-------------GCCACTATA-------------------------------------------------------------------------------------------------------------------------------------------------------TATCCT-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGTATAT-------------------------------------------------------------------------------------------------------------------------CCT--------------------------------------TGTAGGCGCTTGCTATGCGGAATTTGGCGTTCGAGTGCCACACACTTCCGGCTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------ATCCTATGTA----------------------------------------------------------------TT--------------------------------------TGCAGGCGCGTGCTATGCGGAATTTGGCGTTCGTGTGCCACACACATCCGGCTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:28 AM