ID:

dsi_8623

 Coordinate:

3r:3267356-3267505 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.9 -24.9 -24.7

Flybase annnotation

five_prime_UTR [3r_3267553_3267658_-]; CDS [3r_3267506_3267552_-]; exon [3r_3267506_3267658_-]; intron [3r_3265619_3267505_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCTCCGTCGACCTTAATTCTGGGAATTATTTATTAAATTACTGGTTCTTAATGCCAGAGAGTATTTTTCTACACTCTCAATTGTAATTGTTGTTATGGTTTAGCTTCGGTTTCGGGGTTTTGTTTGCTCAGCTATTTTTTCTTGTTTTTTATAAAGTAATATCAGCTACACACTGTGAAGCATGACTAATTTT
**************************************************(((((...(((((..((((.((((((...))))))............(((((.......)))))(((((..........))))).(((((((((....))))))))).......)))).))))).....)))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
GATATGAATAAGAACCTCGGCT.................................................................................................................................................................................................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0 0 0
..............CCTCGGCTTTGTGGAGCGCCT....................................................................................................................................................................................................................... 21 0 1 3.00 3 1 1 1 0 0 0 0 0 0
...........GAACCTCGGCTTTGTGGAGC........................................................................................................................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..........AGAACCTCGGCTTTGTGGAGC........................................................................................................................................................................................................................... 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0
..........................................................CTCCGTCGACCTTAATTCTGG........................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.......ATAAGAACCTCGGCTTTGTGGAGCGC......................................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...ATGAATAAGAACCTCGGCTTTGTGGAGC........................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........AAGAACCTCGGCTTTGTGGAGCGC......................................................................................................................................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0
..........AGAACCTCGGCTTTGTGGAGCGC......................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...ATGAATAAGAACCTCGGCT.................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............CTCGGCTTTGTGGAGCGCCT....................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........GAACCTCGGCTTTGTGGAGCGC......................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........GAACCTCGGCTTTGTGGAGCGCCTGC..................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........GAGAACCTCGGCTTTGTGGAG............................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..............CCTCGGCTTTGTGGAGCGCCG....................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................CTCCGTCGACCTTAATTCTGGG.......................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............CCTCGGCTTTGTGGAGCGCC........................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........GAACCTCGGCTTTGTGGAGCGCC........................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.ATATGAATAAGAACCTCGGCTTTGT................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...ATGAATAAGAACCTCGGC..................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........AAGAACCTCGGCTTTGTGGAGC........................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....GAATAAGAACCTCGGCTTTGTGGAGG........................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....GAATAAGAACCTCGGCTTTGTGGAGCGC......................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............AACCTCGGCTTTGTGGAGCGCCT....................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....GAATAAGAACCTCGGCTC................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........TAAGAACCTCGGCTTTGTGGAGC........................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............ACCTCGGCTTTGTGGAGCGCC........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....GAATAAGAACCTCGGCTTTGCGGAGC........................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....GAATAAGAACCTCGGCTTTGTGGAGC........................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......AATAAGAACCTCGGCTTTGTGGAGCGC......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............AACCTCGGCTTTGTTGAGCGC......................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........GAACCTCGGCTTTGTGGA............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............ACCTCGGCTTTGTGGAGCGCCT....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................CGGCTTTGTGGAGCGCCT....................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..TATGAATAAGAACCTCGGCTTTGTGGAGC........................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..TATGAATAAGAACCTCGGCTTT.................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...ATGAATAAGAACCTCGGCTTCGTGGAGC........................................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.............ACCTCGGCTTTGTGGAGC........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............AACCTCGGCTTTGTGGAGCGCCTGCGGT.................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............AACCTCGGCTTTGTGGAGCGC......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGGATTGGTCAGCTATTTTTT..................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................TGGATTGGTCAGCTATTTTT...................................................... 20 3 20 0.15 3 0 0 0 0 0 0 3 0 0
.................CGGCTTTGAGGAGCG.......................................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 1 0 0 0 0
...................GCTTTGTGGGGCGCC........................................................................................................................................................................................................................ 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0
.............GGCTCGGCTTTGAGGAGCG.......................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1 0 0 0 0
.......................................................................AATTCTTGGAATTATTGA................................................................................................................................................................. 18 2 17 0.06 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................AGACTGTGAAGCATG......... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................TTAGCTTCGGTGTAGG.............................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................TAGCTTCGGTGTAGG.............................................................................. 15 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTATACTTATTCTTGGAGCCGAAACACCTCGCGGACGCCACCGCGGAGTTCATTCAAAGAGGCAGCTGGAATTAAGACCCTTAATAAATAATTTAATGACCAAGAATTACGGTCTCTCATAAAAAGATGTGAGAGTTAACATTAACAACAATACCAAATCGAAGCCAAAGCCCCAAAACAAACGAGTCGATAAAAAAGAACAAAAAATATTTCATTATAGTCGATGTGTGACACTTCGTACTGATTAAAA
**************************************************(((((...(((((..((((.((((((...))))))............(((((.......)))))(((((..........))))).(((((((((....))))))))).......)))).))))).....)))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
......................................................................................................................................................................................................................................ACACTTTGTACTGAT..... 15 1 8 2.88 23 23 0 0 0 0 0
.......................................ACCGCGGAGTTCATT.................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................ACGGTCTCTCATAAAAAGATG......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................GTTACACTTTGTACTGAT..... 18 2 7 0.14 1 1 0 0 0 0 0
...........................................................................................................................................................................GCCAAAACAAACGAGTCTATT.......................................................... 21 3 11 0.09 1 0 0 0 1 0 0
...........................................................................................................................AAGATGTGAGGGTTA................................................................................................................ 15 1 12 0.08 1 0 0 0 1 0 0
.......................................................................................................................TAAAAAGATGTGAAAGCT................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................TAATAAGATGTGGGAGATA................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:3267306-3267555 - dsi_8623 G-----------ATATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCTC---------C---GTCGA--CCTTAATTCTGG-GAA-------------TTATTTATTA--------AATTAC---------TGGTT--CTTAATGCCA-GAGAGTATT-------TTTCTACACTCTCAATTGTAATTGT-----T---------------GTTATGG----TTTAGCTT------------------------CG-------GTTTCGGGGT--TTTGTTTGCTCAGCTAT-TTTTT-------------------CTTGTTTT----------TTAT-------------AAAGTAATAT-CAGCTACAC----ACTGTGAAGCATGACTAATTTT--
droSec2 scaffold_6:3444672-3444921 - G-----------ATATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCTC---------C---GTCGA--CCTTAATTCTGG-GAA-------------TTATTTATTA--------AATTAC---------TGGTT--CTTAATGCCA-GAGAGTATT-------TTTTTACACTCTCAATTGTAATTGT-----T---------------GTTATGG----TTAAGCTT------------------------CG-------GTTTCGGGGT--TTTGTTTGCTCGGCTAT-TTTTT-------------------CTTGTTTT----------TTAT-------------AAAGTAATAT-CAGCTACAC----ACTGTGAAGCATGACTAATTTT--
dm3 chr3R:3349119-3349368 - G-----------ATATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGCGGTGGCGCCTCAAGTAAGTTTCTC---------C---GTCGA--CCTTAATTGTGG-GAA-------------ATATTTATTA--------AATTAC---------TGGTT--TTTAATGCCA-GAGAGTGTT-------TTTCTATACTCTCAATTGTAATTGT-----T---------------GTTATGG----TTAAGCTT------------------------CG-------GTTTCGGGGT--TTTGTTTGCTCAGCTAT-TTTTT-------------------CTGGCTTT----------TTAT-------------AAAGTAATAT-CTGCTACCC----ACTGGTAAGCATGACTAATTTT--
droEre2 scaffold_4770:3609176-3609435 - G-----------ATATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCGC---------C---GTTGG--CCTCAATGCTGG-GAA-------------ATATTTATCAACTTAT-TAATTATTAATTTAACGGCTT--ATTAATGCCG-AGGCGCGTT------GTCTCCATACTTTCGATTGTAATTGT-----G---------------GCTATGG----TT-TGCTT-TGTATTTT------GTAGCGGTTC------GTATTTCGGGGT--TTTGCGTGCCCACCT----------------------------------T----------TTTT-------------ACAGTCAAGT---------------CTGCTAGGCATGACTAATTTT--
droYak3 3R:6968128-6968363 + G-----------AAATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCGCTCA------C---CTTGA--CCTTGATGATGG-GAA-------------TTATTTATTA--------AATTAC---------AGCTT--TTTAATGCCA-GTGAGTGTT-------TTTCTTTACTTTCGATTGTAATTGT-----T---------------GTTGTGG----TT-AGCGT-TGCCAA------------------------------CAAGTT----------------------GTT---GC-------------------CTTTTTAGCA----AAT-------------ATAGTAATAT-CTGTCAT------ATAGTCACGCATGACTAATTTTAT
droEug1 scf7180000409760:250376-250664 - G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------T---GTTAA--CCTTAATGCCAG-GCATTTTTTCGTTTG-TTATTTATTA--------AATTAT---------TGCTT--ATTAATG-CG-GAGAGTCTT-----GCTTTCTATACTTTCGATTGGTGCTGT-----GGTAGTGGGTGCCTTTGTTGTGG----TT-AGCTT-TGTCAATT------GTGGCGGTTC------GTGCTTCGAGTT-TTCTGTTTGTTCAGCTTT-TTTTTGGGAC-------------------TTA----------TTTC-------------GTAGTAATTT---------T----ACTGTCATGCATGAGTAAGTCTT-
droBia1 scf7180000302155:1249029-1249306 + G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGC---------C---GTTGA--CCTTAATGCCGG-GAA-------------TTATTTATTA--------AATTAC---------AGCTT--ATTAATGCCG-GAGAGTGTT------CTTTCAATACTTTCGATT---ACTGT-----TGTTGTGGGTGCCTTTGTTGTGG----CG-AGCTT-TGTCAGTT------GTGGCGATTC------GTGTTTCGGGTT-TTTTGTTTGCTCAGCTCT-TTTT----GC-------------------CTT----------TTTT-------------GTAGTAATTT-CGGTTCTTC----ACTGTCAGGCATGACTAATTCTG-
droTak1 scf7180000415875:522657-522939 - G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGC---------C---GTTGA--CCTTAATGCCGG-GAA-------------TTATTTATTA--------AATTAT---------CGCTT--ATTAATGTCG-GAGAGTGTT------CTTTCTATACTTTCGATT---ATTGT-----TGTTGTGGGTGCCTTTGTTGTGGTTGGTA-AGCTC-TGTCAATT------GTAGCGGTTC------GTGTTTCGGGTT-TTTTGTTTGTTCAGCTCT-TTTTT---GC-------------------CTT----------TTTT-------------GTAGTAATTT-CTGTTCTTC----ACTGTCAGGCATGACTAATTCTG-
droEle1 scf7180000491104:1002261-1002529 + G-----------AAATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------C---GTTGA--CCTTAATGCCGG-GAA-------------TTATTTATTA--------AATTAC---------CGCCG--ATTAATGCCG-GAGAGTGTT----------CTATACTTTCGATT---ATTGT-----TGTT----GTGCTTTTGTTGTGG----T--AGCTT-TGTCAATT------GAAGCGGTTC------GTGTTTCAAGTTTTTTTGTTTGGTCCTCTCTCTTTTT---AC-------------------C--------AATA-------------TTTATTAGAAATTT-TTGTT---------CTGTCGAGCATGACTAATTCGG-
droRho1 scf7180000773324:7644-7897 + G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------C---GTTGA--CCTTAATGCCGG-GAA-------------TTATTTATTA--------AATTAT---------CGCCG--ATTAATACCG-GAGAGTGTT----------CTATACTTTCGA--------------------------CTTTTGTTCTGG----TA-AGCTT-TGTCAATT------GTAGCGGTTT------GTGTTTCGGGTT-CTTTGTTTGGTCAGTTCT-TTTTT---GC-------------------C--------ATTA-------------TATATTAGTAATTC-CTGTT---------CTGTCGAGCATGACTAATTCTG-
droFic1 scf7180000454063:284768-285046 + G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------C---GTCGA--CCTTAATGCCGC-GAA-------------TT-TTTATTT--------AATTAT---------TGCTT--ATTAATGCTG-GATA-TATT------CCTTTTGTACTTTCGATTA---TTGT-----TGTGGCGGGTGCTTTTGTTGTGG----CA-AGCTT-TGTCAAGT------GTAGCGGTTC------GTGTTTCGGCCT-TTTTGTTTGTTCAGCTCT-TTTTT---GC-------------------C--------TTTT-------------TTTATTAGTAATTT-ATGTACCTC----ACTGTTCGGCATGAGTAATTCTG-
droKik1 scf7180000302706:115854-116162 - G-----------ATATGAACAGGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGC---------C---GGCGA--CCTTAATGCCGGAGAA-------------TTATTTATTC--------AATTAT---------CCCCTATATTAATGGCG-GAGAGTGTGCCTTTCCCCTCTATACTTTCGATTG---CTGTCTTCTTTTTGTGGGTGCTATTGTTGTGG---------------TCGATT------GTAGCGGTTT------GTGTTTCAGGTT-CTTTGTTTGCTCAGT----------ATACAATATATATTTTTTGCGGTTTT----------T--TGTATTCTTTTTTATTGGTAATTTTTTGTTATTG----ACTGTCCGGCATGACTAATTCTG-
droAna3 scaffold_13340:3121198-3121448 - A-----------AAATGAACAAGAACCTCGGCTTTTTGGAACGCCTGCGCTGGCGCCTCAAGTAAGTTTGGC---------T---GTTGA--CCTTAATGCCTC-GAA-------------TTATTTATTT--------AATTAT---------CAGTT--ATTAATGTCG-GAGAGAG--------------------------------------------------CTATTGTTGTGG----TT-AGCGT-TGTCAATT------GCAGCGGTTC------GTGTTTCGGATC--TTTGTTTGCTCATATCT-TTTTTTATAC-------------------C--------A---T------TTCGTTTTTATTGGTAATTT-CTGCTGTTC----ACTGTCAGGCGTGACTAATTTTT-
droBip1 scf7180000396712:1229906-1230156 + A-----------AAATGAACAAGAACCTCGGCTTTGTGGAACGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------C---GTTGA--CCTTAATGCCTG-GAA-------------TTATTTATTT--------AATTAT---------CAGTT--ATTAATGTCG-GAGAGTG--------------------------------------------------CTATTGTTGTGG----TT-AGCGT-TGTCAATT------GCAGCGGTTC------GTGTTGCGGATT-CTTTGTTCGCTCAGATAT-TTTTTTATAC-------------------C--------A---T------TTCGTTTTTATTGGTAATTT-CTGCCATTC----ACTGTCAGGCGTGACTAATTTT--
droPer2 scaffold_6:2060648-2060916 - GTCCGTCGTCGAACATGAACAAGAACCTCGGCTTTGTGGAGCGCCTCCGATGGCGCCTCAAGTGAGTAGCAA---------ATG-TTTGA--CCTTAATCCAAA-----------------TAACTTATTACTATATTTAATTAT---------TCTTT--ATTAATGTCGGGAGAGTGTA------CATTTCA--C-----------------------------GTACTATTGTTGCGG----TT-AGCTTTTGTCAATTTTTTTTGT-G-----CGGCTTCGTGT-------TCTTTTGTCCGATCGGCGCT-TTTT----A-----------------------------------------------------ACAGTTT-TCGTTATTCATTATTTGTCAGGCATGACTAACGCTGT
droWil2 scf2_1100000004902:7237484-7237618 - --------------ATGAATAAGAACCTCGGCTTTATGGAACGCTTGCGGTGGCGCTTAAAGTAAGTTTT-CTATTATTAAGAGTGATGA--CCTCAATTG----------GTCAGTTGA-TTATTAATTT--------CATTAT--------AAATTT--GTTAATGTCG-AAAGGTGCT-------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:6247965-6248020 - A-----------AAATGAACAAAAATATCGGCTTTGTGGAGCGCATACGCTGGCGTTTGAAGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:6590982-6591087 - A-----------AGATGAACAAAAACATCGGCTTTGTTGAGCGGCTGCGCTGGCGTTTGAAGTGAGTGCGAC---------T-GTGTGAA--CTACAATTA----------ATCTA--GATTAATTTATTT--------CATTAT---------TAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:7827355-7827467 + G-----------A-ATGAACAAAAACTTCGGCTTTGTGGAGCGTATTCGCTGGCGCTTAAAGTGAGTGTGTC-------------TCTGATCCCCCAATTT----------ATCAA--CATTAATTTATTT--------TAATAT---------TAGTTAGATTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
G-----------ATATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCTC---------C---GTCGA--CCTTAATTCTGG-GAA-------------TTATTTATTA--------AATTAC---------TGGTT--CTTAATGCCA-GAGAGTATT-------TTTCTACACTCTCAATTGTAATTGT-----T---------------GTTATGG----TTTAGCTT------------------------CG-------GTTTCGGGGT--TTTGTTTGCTCAGCTAT-TTTTT-------------------CTTGTTTT----------TTAT-------------AAAGTAATAT-CAGCTACAC----ACTGTGAAGCATGACTAATTTT--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
G-----------ATATGAATAAGAACCTCGGCT......................................................................................................................................................................................................................................................................................................................................................................................................2214.00404000000000000000
.........................CCTCGGCTTTGTGGAGCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................2113.00311100000000000000
......................GAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2013.00303000000000000000
.....................AGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2113.00302100000000000000
.....................................................................CTC---------C---GTCGA--CCTTAATTCTGG-..............................................................................................................................................................................................................................................................................................................................2112.00211000000000000000
..................ATAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2612.00202000000000000000
..............ATGAATAAGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2812.00202000000000000000
....................AAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2412.00201100000000000000
.....................AGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..............ATGAATAAGAACCTCGGCT......................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........................CTCGGCTTTGTGGAGCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
......................GAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
......................GAACCTCGGCTTTGTGGAGCGCCTGC.......................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.........................CCTCGGCTTTGTGGAGCGCCG.........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................................................................CTC---------C---GTCGA--CCTTAATTCTGG-G.............................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.........................CCTCGGCTTTGTGGAGCGCC..........................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
......................GAACCTCGGCTTTGTGGAGCGCC..........................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
............ATATGAATAAGAACCTCGGCTTTGT..................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..............ATGAATAAGAACCTCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
....................AAGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
................GAATAAGAACCTCGGCTTTGTGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
................GAATAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.......................AACCTCGGCTTTGTGGAGCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
................GAATAAGAACCTCGGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...................TAAGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
........................ACCTCGGCTTTGTGGAGCGCC..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
................GAATAAGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.................AATAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
......................GAACCTCGGCTTTGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
........................ACCTCGGCTTTGTGGAGCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
............................CGGCTTTGTGGAGCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............TATGAATAAGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.............TATGAATAAGAACCTCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
........................ACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......................AACCTCGGCTTTGTGGAGCGCCTGCGGT....................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
.......................AACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
droSec2
G-----------ATATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCTC---------C---GTCGA--CCTTAATTCTGG-GAA-------------TTATTTATTA--------AATTAC---------TGGTT--CTTAATGCCA-GAGAGTATT-------TTTTTACACTCTCAATTGTAATTGT-----T---------------GTTATGG----TTAAGCTT------------------------CG-------GTTTCGGGGT--TTTGTTTGCTCGGCTAT-TTTTT-------------------CTTGTTTT----------TTAT-------------AAAGTAATAT-CAGCTACAC----ACTGTGAAGCATGACTAATTTT--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................GAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2212.0020200
..............ATGAATAAGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2812.0020200
.......................AACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2112.0020110
......................GAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..............ATGAATAAGAACCTCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....................AAGAACCTCGGCTTTGTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..........................CTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................ATAAGAACCTCGGCTTTGTGGAGCG............................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..............ATGAATAAGAACCTCGGCTTTGTGG................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.................AATAAGAACCTCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................TTGTGGAGCGCCTGCGGTGGCG................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...................................GTGGAGCGCCTGCGGTGGC.................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................GAACCTCGGCTTTGTGGAGCG............................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...................................GTGGAGCGCCTGCGGTGGCGCCT.............................................................................................................................................................................................................................................................................................................................................................................2311.0010001
....................AAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.................................TTGTGGAGCGCCTGCGGTGGCGCCTC............................................................................................................................................................................................................................................................................................................................................................................2611.0010100
............ATATGAATAAGAACCTCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
................GAATAAGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
............ATATGAATAAGAACCTCGGCT......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.................................................................................................ATTCTGG-GAA-------------TTATTTATTA--------AATTAC---------T............................................................................................................................................................................................................................................................................2711.0010100
..................ATAAGAACCTCGGCTTTGTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
...................................GTGGAGCGCCTGCGGTGGCGCCTC............................................................................................................................................................................................................................................................................................................................................................................2411.0010010
....................AAGAACCTCGGCTTTGTGGAGCG............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.....................AGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
........................ACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
G-----------ATATGAATAAGAACCTCGGCTTTGTGGAGCGCTTGCGGTGGCGCCTCAAGTAAGTTTCTC---------C---GTCGA--CCTTAATTGTGG-GAA-------------ATATTTATTA--------AATTAC---------TGGTT--TTTAATGCCA-GAGAGTGTT-------TTTCTATACTCTCAATTGTAATTGT-----T---------------GTTATGG----TTAAGCTT------------------------CG-------GTTTCGGGGT--TTTGTTTGCTCAGCTAT-TTTTT-------------------CTGGCTTT----------TTAT-------------AAAGTAATAT-CTGCTACCC----ACTGGTAAGCATGACTAATTTT--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................CTTTGTGGAGCGCTTGCGGTG...................................................................................................................................................................................................................................................................................................................................................................................21111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...................................GTGGAGCGCTTGCGGTGGCGCCTCA...........................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.....................................GGAGCGCTTGCGGTGGCGCCTCAA..........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GCCTCAAGTAAGTTTCTC---------C---GT................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................GTGGAGCGCTTGCGGTGGCGCCTCAA..........................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GTGGAGCGCTTGCGGTGGCGCCTC............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
....................................TGGAGCGCTTGCGGTGGCG................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................TTGTGGAGCGCTTGCGGTGG..................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TCGGCTTTGTGGAGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................CTCAAGTAAGTTTCTC---------C---G.................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCTTTGTGGAGCGCTTGCGGT....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCTTTGTGGAGCGCTTGCGGTGGCGCC..............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATATGAATAAGAACCTCGGCT......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACCTCGGCTTTGTGGAGCGCTTG........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTTTGTGGAGCGCTTGCGGTGGC.................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................AATAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................CTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTTGTGGAGCGCTTGCGGTGGCG................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
............................................................................................................................................................................................................................................TATGG----TTAAGCTT------------------------CG-------GTTTCGGGG................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................GGCTTTGTGGAGCGCTTGCGGTGGC.................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................AAGAACCTCGGCTTTGTG.................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GGGGT--TTTGTTTGCTCAGC...............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
............................CGGCTTTGTGGAGCGCTTGC.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................GCGCTTGCGGTGGCGCCTCA...........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................GCCA-GAGAGTGTT-------TTTCTA.....................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTATGG----TTAAGCTT------------------------CG-------GTTTCGGGG................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................GAACCTCGGCTTTGTGGAGCG............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAAGAACCTCGGCTTTGTGGAGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
droEre2
G-----------ATATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCGC---------C---GTTGG--CCTCAATGCTGG-GAA-------------ATATTTATCAACTTAT-TAATTATTAATTTAACGGCTT--ATTAATGCCG-AGGCGCGTT------GTCTCCATACTTTCGATTGTAATTGT-----G---------------GCTATGG----TT-TGCTT-TGTATTTT------GTAGCGGTTC------GTATTTCGGGGT--TTTGCGTGCCCACCT----------------------------------T----------TTTT-------------ACAGTCAAGT---------------CTGCTAGGCATGACTAATTTT--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............TATGAATAAGAACCTCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.................................................................................................................................................................................................................................................................................................TCGGGGT--TTTGCGTGCCCACC...............................................................................................................2111.0010010000
..............................GCTTTGTGGAGCGCCTGCGGT....................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
...................................GTGGAGCGCCTGCGGTGGCGCCTCAAAA........................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
G-----------ATATGAATAAGAACCTCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
......................GAACCTCGGCTTTGTGGAGCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..............ATGAATAAGAACCTCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..................ATAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..................................TGTGGAGCGCCTGCGGTGGC.................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..................ATAAGAACCTCGGCTTTGT..................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...................................GTGGAGCGCCTGCGGTGGCGCCT.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
............................................CTGCGGTGGCGCCTCAAAA........................................................................................................................................................................................................................................................................................................................................................................1930.3310000010
............................................CTGCGGTGGCGCCTCAAAAC.......................................................................................................................................................................................................................................................................................................................................................................2090.1110001000
droYak3
G-----------AAATGAATAAGAACCTCGGCTTTGTGGAGCGCCTGCGGTGGCGCCTCAAGTAAGTTTCGCTCA------C---CTTGA--CCTTGATGATGG-GAA-------------TTATTTATTA--------AATTAC---------AGCTT--TTTAATGCCA-GTGAGTGTT-------TTTCTTTACTTTCGATTGTAATTGT-----T---------------GTTGTGG----TT-AGCGT-TGCCAA------------------------------CAAGTT----------------------GTT---GC-------------------CTTTTTAGCA----AAT-------------ATAGTAATAT-CTGTCAT------ATAGTCACGCATGACTAATTTTATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................AACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2121.00210000010000
..................ATAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2620.50110000000000
G-----------AAATGAATAAGAACCTCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000000000
................GAATAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2820.50100000010000
................................TTTGTGGAGCGCCTGCGGTGGC.................................................................................................................................................................................................................................................................................................................................................................................2220.50100010000000
..............ATGAATAAGAACCTCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................2120.50110000000000
.................................TTGTGGAGCGCCTGCGGTGGC.................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
.....................AGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000
.......................AACCTCGGCTTTGTGGAGCGCCTGC.......................................................................................................................................................................................................................................................................................................................................................................................2520.50100000010000
......................GAACCTCGGCTTTGTGGAGCG............................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
droEug1
G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------T---GTTAA--CCTTAATGCCAG-GCATTTTTTCGTTTG-TTATTTATTA--------AATTAT---------TGCTT--ATTAATG-CG-GAGAGTCTT-----GCTTTCTATACTTTCGATTGGTGCTGT-----GGTAGTGGGTGCCTTTGTTGTGG----TT-AGCTT-TGTCAATT------GTGGCGGTTC------GTGCTTCGAGTT-TTCTGTTTGTTCAGCTTT-TTTTTGGGAC-------------------TTA----------TTTC-------------GTAGTAATTT---------T----ACTGTCATGCATGAGTAAGTCTT-SizeHit CountTotal NormTotal
No Reads
droBia1
G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGC---------C---GTTGA--CCTTAATGCCGG-GAA-------------TTATTTATTA--------AATTAC---------AGCTT--ATTAATGCCG-GAGAGTGTT------CTTTCAATACTTTCGATT---ACTGT-----TGTTGTGGGTGCCTTTGTTGTGG----CG-AGCTT-TGTCAGTT------GTGGCGATTC------GTGTTTCGGGTT-TTTTGTTTGCTCAGCTCT-TTTT----GC-------------------CTT----------TTTT-------------GTAGTAATTT-CGGTTCTTC----ACTGTCAGGCATGACTAATTCTG-SizeHit CountTotal NormTotal
No Reads
droTak1
G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGC---------C---GTTGA--CCTTAATGCCGG-GAA-------------TTATTTATTA--------AATTAT---------CGCTT--ATTAATGTCG-GAGAGTGTT------CTTTCTATACTTTCGATT---ATTGT-----TGTTGTGGGTGCCTTTGTTGTGGTTGGTA-AGCTC-TGTCAATT------GTAGCGGTTC------GTGTTTCGGGTT-TTTTGTTTGTTCAGCTCT-TTTTT---GC-------------------CTT----------TTTT-------------GTAGTAATTT-CTGTTCTTC----ACTGTCAGGCATGACTAATTCTG-SizeHit CountTotal NormTotal
No Reads
droEle1
G-----------AAATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------C---GTTGA--CCTTAATGCCGG-GAA-------------TTATTTATTA--------AATTAC---------CGCCG--ATTAATGCCG-GAGAGTGTT----------CTATACTTTCGATT---ATTGT-----TGTT----GTGCTTTTGTTGTGG----T--AGCTT-TGTCAATT------GAAGCGGTTC------GTGTTTCAAGTTTTTTTGTTTGGTCCTCTCTCTTTTT---AC-------------------C--------AATA-------------TTTATTAGAAATTT-TTGTT---------CTGTCGAGCATGACTAATTCGG-SizeHit CountTotal NormTotal
No Reads
droRho1
G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------C---GTTGA--CCTTAATGCCGG-GAA-------------TTATTTATTA--------AATTAT---------CGCCG--ATTAATACCG-GAGAGTGTT----------CTATACTTTCGA--------------------------CTTTTGTTCTGG----TA-AGCTT-TGTCAATT------GTAGCGGTTT------GTGTTTCGGGTT-CTTTGTTTGGTCAGTTCT-TTTTT---GC-------------------C--------ATTA-------------TATATTAGTAATTC-CTGTT---------CTGTCGAGCATGACTAATTCTG-SizeHit CountTotal NormTotal
No Reads
droFic1
G-----------ATATGAACAAGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------C---GTCGA--CCTTAATGCCGC-GAA-------------TT-TTTATTT--------AATTAT---------TGCTT--ATTAATGCTG-GATA-TATT------CCTTTTGTACTTTCGATTA---TTGT-----TGTGGCGGGTGCTTTTGTTGTGG----CA-AGCTT-TGTCAAGT------GTAGCGGTTC------GTGTTTCGGCCT-TTTTGTTTGTTCAGCTCT-TTTTT---GC-------------------C--------TTTT-------------TTTATTAGTAATTT-ATGTACCTC----ACTGTTCGGCATGAGTAATTCTG-SizeHit CountTotal NormTotal
No Reads
droKik1
G-----------ATATGAACAGGAACCTCGGCTTTGTGGAGCGCCTGCGCTGGCGCCTCAAGTAAGTTTCGC---------C---GGCGA--CCTTAATGCCGGAGAA-------------TTATTTATTC--------AATTAT---------CCCCTATATTAATGGCG-GAGAGTGTGCCTTTCCCCTCTATACTTTCGATTG---CTGTCTTCTTTTTGTGGGTGCTATTGTTGTGG---------------TCGATT------GTAGCGGTTT------GTGTTTCAGGTT-CTTTGTTTGCTCAGT----------ATACAATATATATTTTTTGCGGTTTT----------T--TGTATTCTTTTTTATTGGTAATTTTTTGTTATTG----ACTGTCCGGCATGACTAATTCTG-SizeHit CountTotal NormTotal
No Reads
droAna3
A-----------AAATGAACAAGAACCTCGGCTTTTTGGAACGCCTGCGCTGGCGCCTCAAGTAAGTTTGGC---------T---GTTGA--CCTTAATGCCTC-GAA-------------TTATTTATTT--------AATTAT---------CAGTT--ATTAATGTCG-GAGAGAG--------------------------------------------------CTATTGTTGTGG----TT-AGCGT-TGTCAATT------GCAGCGGTTC------GTGTTTCGGATC--TTTGTTTGCTCATATCT-TTTTTTATAC-------------------C--------A---T------TTCGTTTTTATTGGTAATTT-CTGCTGTTC----ACTGTCAGGCGTGACTAATTTTT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................AAGAACCTCGGCTTTTTGGAACGC...........................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
................GAACAAGAACCTCGGCTTTTTGGAAC.............................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................................TTTTGGAACGCCTGCGCTG...................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............ATGAACAAGAACCTCGGCTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................AGAACCTCGGCTTTTTGGAAC.............................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................AACAAGAACCTCGGCTTTTTGGAA..............................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................CAAGAACCTCGGCTTTTTGGAACGC...........................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..............ATGAACAAGAACCTCGGCTTTTTGG................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................CGCCTGCGCTGGCGCCTCAA..........................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................GAACAAGAACCTCGGCTTTTTGGA...............................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................AAGAACCTCGGCTTTTTGGA...............................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
A-----------AAATGAACAAGAACCTCGGCTTTGTGGAACGCCTGCGCTGGCGCCTCAAGTAAGTTTCGA---------C---GTTGA--CCTTAATGCCTG-GAA-------------TTATTTATTT--------AATTAT---------CAGTT--ATTAATGTCG-GAGAGTG--------------------------------------------------CTATTGTTGTGG----TT-AGCGT-TGTCAATT------GCAGCGGTTC------GTGTTGCGGATT-CTTTGTTCGCTCAGATAT-TTTTTTATAC-------------------C--------A---T------TTCGTTTTTATTGGTAATTT-CTGCCATTC----ACTGTCAGGCGTGACTAATTTT--SizeHit CountTotal NormTotal
No Reads
droPer2
GTCCGTCGTCGAACATGAACAAGAACCTCGGCTTTGTGGAGCGCCTCCGATGGCGCCTCAAGTGAGTAGCAA---------ATG-TTTGA--CCTTAATCCAAA-----------------TAACTTATTACTATATTTAATTAT---------TCTTT--ATTAATGTCGGGAGAGTGTA------CATTTCA--C-----------------------------GTACTATTGTTGCGG----TT-AGCTTTTGTCAATTTTTTTTGT-G-----CGGCTTCGTGT-------TCTTTTGTCCGATCGGCGCT-TTTT----A-----------------------------------------------------ACAGTTT-TCGTTATTCATTATTTGTCAGGCATGACTAACGCTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................CAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................25116.00161321000
.......................AACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................1915.005500000
................GAACAAGAACCTCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................1914.004400000
......................GAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
........................ACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
....................AAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2413.003300000
.......................AACCTCGGCTTTGTGGAGCG............................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
...................CAAGAACCTCGGCTTTGTGGAGCG............................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.......................AACCTCGGCTTTGTGGAGCGCCTCC.......................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................ATGTCGGGAGAGTGTA------CAT.........................................................................................................................................................................................................................................1911.001010000
................GAACAAGAACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
GTCCGTCGTCGAACATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
....GTCGTCGAACATGAACAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
GTCCGTCGTCGAACATGAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
GTCCGTCGTCGAACATGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................CAAGAACCTCGGCTTTGT..................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................ACAAGAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..............ATGAACAAGAACCTCGGCTTTGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......................AACCTCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
......................GAACCTCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droWil2
--------------ATGAATAAGAACCTCGGCTTTATGGAACGCTTGCGGTGGCGCTTAAAGTAAGTTTT-CTATTATTAAGAGTGATGA--CCTCAATTG----------GTCAGTTGA-TTATTAATTT--------CATTAT--------AAATTT--GTTAATGTCG-AAAGGTGCT-------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................TTATGGAACGCTTGCGGTGG..................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................AATAAGAACCTCGGCTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.......................AACCTCGGCTTTATGGAAC.............................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................GCTTTATGGAACGCTTGCGGT....................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
A-----------AAATGAACAAAAATATCGGCTTTGTGGAGCGCATACGCTGGCGTTTGAAGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................GTGGAGCGCATACGCTGGC.................................................................................................................................................................................................................................................................................................................................................................................1913.003001000000000001000100000000000000000000000000000000000000000000
..................................TGTGGAGCGCATACGCTGGCGT...............................................................................................................................................................................................................................................................................................................................................................................2212.002000000000200000000000000000000000000000000000000000000000000000
..................ACAAAAATATCGGCTTTGT..................................................................................................................................................................................................................................................................................................................................................................................................1912.002001000000000000000000000000001000000000000000000000000000000000
................GAACAAAAATATCGGCTTT....................................................................................................................................................................................................................................................................................................................................................................................................1912.002001000000000000000000000000001000000000000000000000000000000000
.........................TATCGGCTTTGTGGAGCGCATACGCTGGC.................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000010
............................CGGCTTTGTGGAGCGCATACGCTGGC.................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
......................AAATATCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................TGTGGAGCGCATACGCTGGC.................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.................AACAAAAATATCGGCTTTGTGGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................TTTGTGGAGCGCATACGCTGGCT................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..................ACAAAAATATCGGCTTTGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................AAATATCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
...................CAAAAATATCGGCTTTGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
................GAACAAAAATATCGGCTTTGTG.................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
................................TTTGTGGAGCGCATACGCTGG..................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
....................AAAAATATCGGCTTTGTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................AAATATCGGCTTTGTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...........................................CATACGCTGGCGTTTGAAAAC.......................................................................................................................................................................................................................................................................................................................................................................2130.331000000000000000100000000000000000000000000000000000000000000000
droMoj3
A-----------AGATGAACAAAAACATCGGCTTTGTTGAGCGGCTGCGCTGGCGTTTGAAGTGAGTGCGAC---------T-GTGTGAA--CTACAATTA----------ATCTA--GATTAATTTATTT--------CATTAT---------TAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................GGCTTTGTTGAGCGGCTGCGCTGGC.................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
................GAACAAAAACATCGGCTTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
G-----------A-ATGAACAAAAACTTCGGCTTTGTGGAGCGTATTCGCTGGCGCTTAAAGTGAGTGTGTC-------------TCTGATCCCCCAATTT----------ATCAA--CATTAATTTATTT--------TAATAT---------TAGTTAGATTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................CTTCGGCTTTGTGGAGCGTA..........................................................................................................................................................................................................................................................................................................................................................................................2011.00110

Generated: 05/18/2015 at 09:33 AM