ID:

dsi_8575

 Coordinate:

3l:16261131-16261280 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.3 -19.0 -19.0 -18.9

Flybase annnotation

exon [3l_16261040_16261130_-]; CDS [3l_16261040_16261130_-]; intron [3l_16261131_16261665_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAAATATATTAGGAAACTAATACATACTAGAACTGGCATCTTAGGCCTGCAGCTCGAATAAGTTATTTGGTTGATAGGCTGAGCTTTAGAACTCACCTCAGGTATTAAAAGATACAATTCGCCATCCATCACTGGTATACATTACATTTTATTAAACACAAATATACTATTTAAACTTTTACTCGTCTCCACCAAATAGCATTATTCTGGATGCGGATCCCTCGTCCGTGGTGAAACGCGTTGATCTGC
**************************************************.............((.(((((.((..((((.(((...(((((.........((((((((((..........((((........))))..........)))))............)))))........)))))))))))).))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR1275483
Male prepupae
................................................................................................................................................................................CTTTTACTCGTCTCCACC........................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
........................................................................................................................................................................................................CATTATTCTGGATGCGGATCCC............................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCGGATCCCTCGTCCGTGGT................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTGGTGAAATGCGTTGA..... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GGTGAAATGCGTTGAT.... 16 1 4 0.50 2 2 0 0 0 0 0 0 0 0
TAGAATATATTAGGAAACT....................................................................................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................GGTGAAATGCGTTGA..... 15 1 11 0.45 5 5 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGTCCGTCGTGAAAAGGG......... 18 3 20 0.40 8 1 0 0 0 0 5 2 0 0
....................................................................................................................................................................................................................................GCGGTGAAATGCGTTGAT.... 18 2 5 0.40 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCGCGGTGAAATGCGTTGAT.... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................TTTGATTGATAGGCTGAGTTTTG................................................................................................................................................................. 23 3 3 0.33 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................GGTGAAATGCGTAGATCT.. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGTCCGTCGTGAAAAG........... 16 2 20 0.15 3 2 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................GGTGAAATGCGTTGATAT.. 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GTCGGTGGTGAAACG........... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................GTGAAATGCGTTGATAT.. 17 2 20 0.10 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AACTCGTCTCCACCA....................................................... 15 1 12 0.08 1 0 0 0 1 0 0 0 0 0
................................................................TATATGGTAGATAGGCT......................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATTTTATATAATCCTTTGATTATGTATGATCTTGACCGTAGAATCCGGACGTCGAGCTTATTCAATAAACCAACTATCCGACTCGAAATCTTGAGTGGAGTCCATAATTTTCTATGTTAAGCGGTAGGTAGTGACCATATGTAATGTAAAATAATTTGTGTTTATATGATAAATTTGAAAATGAGCAGAGGTGGTTTATCGTAATAAGACCTACGCCTAGGGAGCAGGCACCACTTTGCGCAACTAGACG
**************************************************.............((.(((((.((..((((.(((...(((((.........((((((((((..........((((........))))..........)))))............)))))........)))))))))))).))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................................................ACGCCTAGGGAGGATGCA.................... 18 2 2 2.00 4 4 0 0 0 0
..............................................................................TGAGTCGGAATCTTGAGTGGAG...................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
....................................................................................................................................................................................................................ACGCCTAGGGAGGATGC..................... 17 2 12 0.42 5 5 0 0 0 0
.............................................................................................................TTTGATGTTAAGCGGTAGG.......................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0
....................................................................................................................................................................................................................ACGCCTAGGGAGGATGCAA................... 19 3 15 0.20 3 3 0 0 0 0
....................................................................................................................................................................................................................ACGCCTAGGGAGCAT....................... 15 1 6 0.17 1 0 0 0 1 0
.....ATATAATGCTTTGATTTTG.................................................................................................................................................................................................................................. 19 2 10 0.10 1 0 0 0 0 1
....................................................................................................................................................................................................................ACGCCTAGGGAGGATG...................... 16 2 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 03:39 AM