ID:dsi_8548 |
Coordinate:3l:7611065-7611173 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3l_7610112_7611064_-]; CDS [3l_7610112_7611064_-]; CDS [3l_7611174_7611762_-]; exon [3l_7611174_7611762_-]; intron [3l_7611065_7611173_-]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------################################################## ATTCGCTGGAGTATTGGATCGCACGCAGCAGGAACTGCAGCGACTGAAAAGTGAGTTAATCGAGATATAATGGTTAACATGTTCTTATGGTTAATATGTTAATTATTTTTCAAATTTCGTAAATGTTTCCCTATATCTAATGACTTATTTCCCTTGCAGAGCTGGACAAATCGGCGCCATCGCTGGCAGTGAGCTCGGTGGCCGGGCAG **************************************************((((((((....(((((((((((((((((((((.........)))))))))))))).........................)))))))..))))))))...........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................CATCGCTGGCAGTGAGCTCGGTG......... | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...................................................................................................................................................TTTTCCTTGCAGAGCTGGAGA......................................... | 21 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................TCCCTAGTAGGGCTGGACA......................................... | 19 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 |
| ..........................................ACTGAAAAGTGAGTA........................................................................................................................................................ | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 |
|
TAAGCGACCTCATAACCTAGCGTGCGTCGTCCTTGACGTCGCTGACTTTTCACTCAATTAGCTCTATATTACCAATTGTACAAGAATACCAATTATACAATTAATAAAAAGTTTAAAGCATTTACAAAGGGATATAGATTACTGAATAAAGGGAACGTCTCGACCTGTTTAGCCGCGGTAGCGACCGTCACTCGAGCCACCGGCCCGTC
**************************************************((((((((....(((((((((((((((((((((.........)))))))))))))).........................)))))))..))))))))...........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
M053 female body |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ...................................ACGTCGCTGACTTTTCACTCAATTAG.................................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...................................................................................................................................................AAAGGGAACTTCTCGACCAGTAT....................................... | 23 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................AGGGATATAGATTCCT.................................................................. | 16 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................TCAAAGGGATATAGA....................................................................... | 15 | 1 | 14 | 0.36 | 5 | 5 | 0 | 0 | 0 | 0 |
| ............................................................................................................................CAAAGGGATATAGAAT..................................................................... | 16 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................................................AAAGGGATATAGAATTCT.................................................................. | 18 | 2 | 9 | 0.22 | 2 | 2 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................AGGGATATAGAATCCTG................................................................. | 17 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................AAAAGTTTAAGGCATTT...................................................................................... | 17 | 1 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................................................GGGATATAGAATCCTG................................................................. | 16 | 2 | 16 | 0.19 | 3 | 2 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................TCAAAGGGATATAGAATCC................................................................... | 19 | 3 | 15 | 0.13 | 2 | 2 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................TTCAAAGGGATATAGAATCC................................................................... | 20 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................................TCTCTCGAGACTCCGGCCC... | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:25 AM