ID:

dsi_8540

 Coordinate:

3l:11840584-11840733 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.4 -22.0 -21.8

Flybase annnotation

exon [3l_11840467_11840583_+]; CDS [3l_11840467_11840583_+]; intron [3l_11840584_11842838_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCCACATCATCCTTGACGGAAAGAGGACCCGACAAAGCCCGACTAAACGGTGAGTAATATTGATTTTTAGTTGAAAGTTATTCGTTCGAAAGTTGAGTTGCCTTTCAGTTGTTCCATTAGCAATTATTATTTCGAAATGCTGCGCCAAAAATTCATAGGATAATATGTTTTTATTTTAATAGAACCTTTTTAGGTACATATTTTTATAGATATACAGTTTATTAGATCGTTTTTTGTAAATGCCACATA
**************************************************.((((((((.((((((...))))))..))))))))(((((((....((((((..................))))))....)))))))....((.(((((((((((.((((((((.......))))))))...)))..))))).))).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................CGACTAAGCGCGAGTAAACGG....................................................................................................................................................................................................... 21 3 3 12.33 37 37 0 0 0 0 0
..............................CGACTAAGCGCGATTAAACGG....................................................................................................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0
........................................................................TGAAGGTTATCCGTTCGAA............................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................CGAAAGTTGAGTTGCCTTT................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................TTTAATATCACCTTCTTAGG....................................................... 20 3 14 0.57 8 8 0 0 0 0 0
..............................CGACTAAGCGCGAGTAAACG........................................................................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0
...........................GCCCGACCAAGCCCGGCTA............................................................................................................................................................................................................ 19 3 9 0.11 1 0 0 0 1 0 0
....................................................................................................................ATTAGCGATTATTATT...................................................................................................................... 16 1 12 0.08 1 0 0 0 1 0 0
...................GAAAGAGGACCGGAC........................................................................................................................................................................................................................ 15 1 15 0.07 1 0 1 0 0 0 0
..............................CGACTAAGCGCGAGTAAAC......................................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................GTTCATTAGATCGTT.................. 15 1 16 0.06 1 0 0 0 0 1 0
..............................................................GATTGTTAGTTGAAA............................................................................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0
..........................................................................AAGGTTATCCGTTCGA................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CCGGTGTAGTAGGAACTGCCTTTCTCCTGGGCTGTTTCGGGCTGATTTGCCACTCATTATAACTAAAAATCAACTTTCAATAAGCAAGCTTTCAACTCAACGGAAAGTCAACAAGGTAATCGTTAATAATAAAGCTTTACGACGCGGTTTTTAAGTATCCTATTATACAAAAATAAAATTATCTTGGAAAAATCCATGTATAAAAATATCTATATGTCAAATAATCTAGCAAAAAACATTTACGGTGTAT
**************************************************.((((((((.((((((...))))))..))))))))(((((((....((((((..................))))))....)))))))....((.(((((((((((.((((((((.......))))))))...)))..))))).))).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................AAAATAAAATTATCTTGG............................................................... 18 0 2 1.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................AGTAAAGCTTTCCGGCGCGGT...................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................TAATAATAAAGCTTT................................................................................................................ 15 0 4 0.50 2 0 0 2 0 0 0 0 0
...............................................................................ATACGCAAGCTTTCAGCTCAT...................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0
...........................TGGGTTGTTTCGGGCGGA............................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................AAAAATCTAGCAAAAAA.............. 17 1 15 0.07 1 0 0 0 0 0 1 0 0
...........................TGGGTTGGTTCGGGCTGA............................................................................................................................................................................................................. 18 2 18 0.06 1 0 0 0 0 1 0 0 0
........................TCCAGGGCTGATTCGGAC................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................TCTCAATATGTCAAATA........................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:39 AM