ID:

dsi_8465

 Coordinate:

3r:10758313-10758376 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10758181_10758312_-]; exon [3r_10757991_10758312_-]; CDS [3r_10758377_10758556_-]; exon [3r_10758377_10758580_-]; intron [3r_10758313_10758376_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------##################################################
TTAAGCGTATCTCTGGCTTGATTTACGAGGAAACTCGCGGTGTGCTGAAGGTAAGTTTTGGCAAAACGAAGAGAAAGTGGTGAAAAACTGGTTAATTGCTGGGAAAATTCACAGGTATTCCTTGAGAACGTTATCCGTGACGCTGTCACCTACACCGAGCACGC
**************************************************.....................................(((...((((........))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O002
Head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR902008
ovaries
.............TGGCTTGATTTACGAGGAAACTCGCGG............................................................................................................................ 27 0 1 11.00 11 8 0 0 2 0 0 0 0 0 1 0 0
...........TCTGGCTTGATTTACGAGGAAACTCGC.............................................................................................................................. 27 0 1 7.00 7 4 1 0 1 0 1 0 0 0 0 0 0
.......................TACGAGGAAACTCGCGGTGTGCTGAA................................................................................................................... 26 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTTATCCGTGACGCTGTC................. 18 0 1 3.00 3 0 0 0 0 2 0 1 0 0 0 0 0
...................GATTTACGAGGAAACTCGCGGTGT......................................................................................................................... 24 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.......................TACGAGGAAACTCGCGGTGTGCTGA.................................................................................................................... 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
....................................................................................................................ATTCCTTGAGAACGTTATCCGTGAC....................... 25 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
.........TCTCTGGCTTGATTTACGAGGAAACT................................................................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGTGACGCTGTCACCTACACCGAGCA... 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................GAGAACGTTATCCGTGAC....................... 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...................................CGCGGTGTGCTGAAGGTA............................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................ACGTTATCCGTGACGCTGTCA................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........TCTGGCTTGATTTACGAGGAAACTCGCGG............................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGAGAACGTTATCCGTGACGCTGTC................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................TACGAGGAAACTCGCGGTGTGCTAAAGG................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......TATCTCTGGCTTGATTTACGAGGA..................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCCGTGACGCTGTCACCTACACC........ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................CGAGGAAACTCGCGGTGTGCTGAAG.................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................TTACGAGGAAACTCGCGGTGTGCTAA.................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGAGAACGTTATCCGTGAC....................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................CGCGGTGTGCAGAAGGTAA.............................................................................................................. 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........TCTCTGGCTTGATTTACGAGGAAA................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........TCTGGCTTGATTTACGAGA...................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..AAGCGTATCTCTGGCTTGATTTACGA........................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................CCTTGAGAACGTTATC............................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CCTTGAGAACGTTATCCGTGAC....................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................GATTTACGAGGAAACTCGC.............................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..AAGCGTATCTCTGGCTTGATTTACG......................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......TATCTCTGGCTTGATTTACGAGGAAACTC................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................TACGAGGAAACTCGCGGTGTGCTG..................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................CGAGGAAACTCGCGGTGTGCTAAAGG................................................................................................................. 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................GAAACTCGCGGTGTGCTGAAGGTA............................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............GCTTGATTTACGAGGAAA................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................TTACGAGGAGACCCGCGGTGTGCTGAA................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................ACGAGGAAACTCGCGGTGTGCTGAA................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGAGAACGTTATCCGTGAC....................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............GCTTGATTTACGAGGAAACTCGCGG............................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............CTGGCTTGATTTACGAGGAAACTC................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGAGAACGTTATCCGTGACGC..................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.........TCTCTGGCTTGATTTACGAGGAAACTC................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...AGCGTATCTCTGGCTTGATTTA........................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...........TCTGGCTTGATTTACGAGG...................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................AGAACGTTATCCGTGACGCTGTCACCTAC........... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GAAGGTATTCCTTGAGAACGTT................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TATTCCTTGAGAACGTTATCCGTGA........................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AGGTATTCCTTGAGAACGTTATCCGTGA........................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
TTAAGCGTATCTCTG..................................................................................................................................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..AAGCGTATCTCTGGCTTGATTTACAA........................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
............CTGGCTTGATTTACGAGGAAACTCGCGG............................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TATCCGTGACGCTGTCACCTACA.......... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................GAAGAGAAAGTTGTAAAAAA............................................................................. 20 2 6 0.50 3 0 0 3 0 0 0 0 0 0 0 0 0
...................................CGCGGTGTGCTGAAGGTATTC............................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................GACGAAGAGAAAGTTGTTAAAA.............................................................................. 22 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................GAAGAGAAAGTTGTTAAAAA............................................................................. 20 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................GAAGAGAAAGTTGTAAAAA.............................................................................. 19 2 11 0.18 2 0 0 2 0 0 0 0 0 0 0 0 0
...................................CGCGGTGTGCAGAAGGTAAAA............................................................................................................ 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................GAAGAGAAAGTTGTTAAAA.............................................................................. 19 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................GTAGTAAAAGACTGGTTAAT.................................................................... 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................GAAGAGAAAGTTGTTAAAAAA............................................................................ 21 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................AGTTTTGGCGAAACG................................................................................................ 15 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................GGTGAAAAACTCGTT....................................................................... 15 1 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................GACGGTAAGGTTTGGC...................................................................................................... 16 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................GAAGAGAAAGTTGTTAAA............................................................................... 18 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AATTCGCATAGAGACCGAACTAAATGCTCCTTTGAGCGCCACACGACTTCCATTCAAAACCGTTTTGCTTCTCTTTCACCACTTTTTGACCAATTAACGACCCTTTTAAGTGTCCATAAGGAACTCTTGCAATAGGCACTGCGACAGTGGATGTGGCTCGTGCG
**************************************************.....................................(((...((((........))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
................................................................TTGCTACTCTTTGACCACTTTGT............................................................................. 23 3 1 3.00 3 3 0 0 0
................................................................TTGCTTCTCTGTCACCACA................................................................................. 19 2 1 1.00 1 0 1 0 0
............................................................................................................AGTGTCAGTTAGGAACTCTT.................................... 20 3 7 0.14 1 0 0 1 0
...............................................................................................................................................AAAGTGGATGTGGCTTGTG.. 19 2 9 0.11 1 0 1 0 0
..........................................................................................................................................CTGCGACAGTGCATG........... 15 1 19 0.05 1 0 0 0 1
..........................................ACGAGTTCCATTCAA........................................................................................................... 15 1 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:48 AM