ID:

dsi_8421

 Coordinate:

3l:11840317-11840466 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_11840467_11840583_+]; exon [3l_11840467_11840583_+]; intron [3l_11838651_11840466_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCATAAAAAGGAGGCCAATGATTATGTCCCGGCTGAAGTACTTCAGCTTATTGGCCGCCATCCAAACAGATTCTTCATATCTCAATTTTAATTGCGCCCGTGACAGTTTGCGTTTCACTTTTTCGCCCAGCAATGTACACTCGTACATATATGGGTCATGGAATTCCGGATATTTATAATTCGATATTGCACTCTTTCAGACGCCTTCACGGACTATTTCTCCGACTACGATTGCAACCAGCCGCTGATG
**************************************************.(((.(((.((..(((.((((.......))))...)))..)).))).)))(((.((..(((.............(((((...((((((....))))))...)))))..(((....)))((((((........)))))))))..)).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
..........................................................................................................................................................................................................GCCTTCACGGACTATTTCTCCGAC........................ 24 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................................CTTCACGGACTATTTCTCC........................... 19 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGACGCCTTCACGGACC................................... 19 2 3 0.33 1 0 1 0 0 0 0
.....................TTATGACCCTGCTGAAGAAC................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 1 0 0 0
................................................................................................................................................................GAATGCCGGATATTT........................................................................... 15 1 17 0.06 1 0 0 0 1 0 0
.....................................................................................................................................................................CGGGATATTTAAACTTCGA.................................................................. 19 3 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................................................................AATTTGCACTCGTTCAGAC................................................ 19 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

GGTATTTTTCCTCCGGTTACTAATACAGGGCCGACTTCATGAAGTCGAATAACCGGCGGTAGGTTTGTCTAAGAAGTATAGAGTTAAAATTAACGCGGGCACTGTCAAACGCAAAGTGAAAAAGCGGGTCGTTACATGTGAGCATGTATATACCCAGTACCTTAAGGCCTATAAATATTAAGCTATAACGTGAGAAAGTCTGCGGAAGTGCCTGATAAAGAGGCTGATGCTAACGTTGGTCGGCGACTAC
**************************************************.(((.(((.((..(((.((((.......))))...)))..)).))).)))(((.((..(((.............(((((...((((((....))))))...)))))..(((....)))((((((........)))))))))..)).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................TAACGTGAGATTGTCTGC............................................... 18 2 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................AACGCAAAGTGAGCAAGCAGGTC........................................................................................................................ 23 3 1 1.00 1 0 1 0 0 0 0 0
........................................................CGGTTGGTTTGTCTAAAAAGAATAG......................................................................................................................................................................... 25 3 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................AACGTGAGAACGTCTGCCAAA........................................... 21 3 2 0.50 1 0 0 0 1 0 0 0
....................................................................................................................................................................GGACCTATAAATATTAAGCTAA................................................................ 22 3 3 0.33 1 0 0 0 0 1 0 0
..........................................................................................................................................................................................AACGTGAGATTGTCTGC............................................... 17 2 7 0.29 2 2 0 0 0 0 0 0
...........................................................................................................................................................................................ACGTGAGAACGTCTGCCAAA........................................... 20 3 6 0.17 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................TAACGTGAGATTGTCTGCC.............................................. 19 3 15 0.13 2 2 0 0 0 0 0 0
........................................................................................................................AGAGCGGGTCGTTAC................................................................................................................... 15 1 18 0.11 2 0 0 0 0 0 2 0
......................................................................................................................................................................................................................ATAAAGAGGCTGCGGCTAAA................ 20 3 9 0.11 1 0 1 0 0 0 0 0
...ATTTTTCCGCCGGCTAC...................................................................................................................................................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0
.............................GCCCACTCCAAGAAGTCGAA......................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 1 0 0 0 0
........................................................................................................................................................................................GTAACGTGAGATTGTCTGC............................................... 19 3 14 0.07 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................GAAAGTCTACGGAAG.......................................... 15 1 18 0.06 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAAGTGCGTTGTAAAGAG............................ 19 3 18 0.06 1 0 0 0 1 0 0 0
......................................................................................................................................................................................................................AAACAGAGGCTGATGC.................... 16 2 20 0.05 1 0 0 0 1 0 0 0
.....................................................................................AAAATTAACGCTGGCAT.................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:39 AM