ID:

dsi_8414

 Coordinate:

3l:16260445-16260594 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.9 -3.9 -3.8

Flybase annnotation

three_prime_UTR [3l_16260267_16260396_-]; CDS [3l_16260397_16260444_-]; exon [3l_16260267_16260444_-]; intron [3l_16260445_16261039_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTACCTTTTGTACATGTTACCGAATTTTTGATTACTTTTCCCCGTATTGCCCCATTCATTGTACTCCGAGAATGTTCAAATAAAATTGGTGAAAATGTTCTGGAACTTCGCGCTCATTTTGATTTGTTTCATTAGCTAATTGAACGAAATTACTGCCGAGTATCTGTATCTATATATGTGTGTGCTATCTATCTTTTAGGTTCTGCAATCGGCACGTGAACAACTCAAATGGTCCATTCTGAAGTGATG
********************************************************..........((.((((((((...((.......))...))))))))))************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
........TAGTACATGTTACCGAATTTTTGATTAC...................................................................................................................................................................................................................... 28 1 1 2.00 2 0 0 0 0 2 0 0 0 0
.................................................................................................................................................................................................................TCGGCACGTGAACAACTCAAATGGTCCA............. 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................................................GTGAAAAGGTTCTGG.................................................................................................................................................. 15 1 11 1.18 13 0 0 13 0 0 0 0 0 0
................................................................................................................................................................................................................ATCGGCACGTGAACAACTCAAATGGTCCA............. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................ATAAAATTGGTGAAAATGTTCTGGAAAA.............................................................................................................................................. 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................GTGAAAATGTTCTGG.................................................................................................................................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................AATAAAATTGGTGAAAATGTTCTGGAA................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................ATTGCCCCATTCATTGTACTCCGAGA.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................TATTGCCCCATTCATTGTACTCCGA.................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................AAATAAAATTGGTGAAAATGTTCTGGAAC............................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................TAAAATTGGTGAAAATGTTCTGGA................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........TTGTACATGTTACCGAATTTTTGATT........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........TACATGTTACCGAATTTTTGATTAC...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCAATCGGCACGTGAACAACTCAAA.................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................TTCTGCAATCGGCACGTGAACAACTCA...................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................CAAATAAAATTGGTGAAAATGTTCTGGA................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................TATTGCCCCATTCATTGTACTCCGAGAA................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................ATTGCCCCATTCATTGTACTCCGAGG.................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................TCATTGTACTCCGAGAATGTTCAAATA....................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................TAAAATTGGTGAAAATGTTCTGGAACTT............................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................CGGCACGTGAACAACTCAAATGGTC............... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................AATGTTCTGGAACTTCGCGCTC...................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................TTACCGAATTTTTGATTACTTTTCCCC.............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................AAATGTTCTGGAATTTCGTGGT....................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................TATCTGTTTTTATATATGTATGTG................................................................. 24 3 14 0.07 1 0 0 0 1 0 0 0 0 0
.............................................................................................AAATGTCCTGGAACT.............................................................................................................................................. 15 1 18 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TACTTAATTGAACGAAATCA................................................................................................. 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.................................................................................GAAGATTGGTGATAATGTT...................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAATGGAAAACATGTACAATGGCTTAAAAACTAATGAAAAGGGGCATAACGGGGTAAGTAACATGAGGCTCTTACAAGTTTATTTTAACCACTTTTACAAGACCTTGAAGCGCGAGTAAAACTAAACAAAGTAATCGATTAACTTGCTTTAATGACGGCTCATAGACATAGATATATACACACACGATAGATAGAAAATCCAAGACGTTAGCCGTGCACTTGTTGAGTTTACCAGGTAAGACTTCACTAC
**************************************************************************************************************************************************..........((.((((((((...((.......))...))))))))))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
.......................................................................................................................................................................................................................................CCAGGTAGGTCTTCACTA. 18 2 4 0.50 2 0 1 1 0 0
...........................................................................................................AGGCGCAAGTAAAACTAAA............................................................................................................................ 19 2 4 0.25 1 1 0 0 0 0
..............................................................................................................................................................................................................................TTGAGTTGCCCAGGTAAGCCT....... 21 3 9 0.22 2 2 0 0 0 0
....................................................................................................GACCTTGAAGGACGAGTA.................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0
..............................................................ATGAGGCCCTTGCAAG............................................................................................................................................................................ 16 2 19 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 03:37 AM