ID:

dsi_8410

 Coordinate:

3l:7610690-7610924 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.0 -16.3

Flybase annnotation

exon [3l_7610112_7611064_-]; CDS [3l_7610112_7611064_-]

No Repeatable elements found

Sense Strand Reads

###############################################################################################################################################################################################################################################################################################################################################
GGACTCTTTGGAAGCCGGTGGTGACCCCGTGCGGACACACGTACTGCCTGGTATGCTTGGATCGTTGCATGGATTACAACTCCCCGTGTCCATTGTGCATGTCACCACTTGTGGAGTTCAATGTCAATGCCAGTGCCAGTACCAGTGCCAGTCAGCATCCGAATCCGAATCCGAATCAGAATCAGATCCACCTGCATCCGGGCTCATCCTCGCCAGTTCCATTTGCGCTGGCCAAGCGGCCAGTGACAAAGTTCCTAGAAGCCGCAATGAAACGATTCATTCCAGACCACTACGAGGCGCGATTCCGTCAGGAGATCGACCAGGAGCCCTCGGTG
***************************************************..((...........((((.(((...((((((..(((......(((.....))))))....))))))....))).))))))*********************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
.............................................................................................................................................................................AGTGAGAATCTGATCCACC............................................................................................................................................... 19 3 15 19.80 297 0 205 85 0 0 0 0 0 0 0 7
...................................................TATGCTTGGATCGTT............................................................................................................................................................................................................................................................................. 15 0 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0
...................................................TATGCTTGGATCGTTTC........................................................................................................................................................................................................................................................................... 17 1 3 5.00 15 15 0 0 0 0 0 0 0 0 0 0
...................................................TATGCTTGGATCGTTTCC.......................................................................................................................................................................................................................................................................... 18 2 5 4.00 20 20 0 0 0 0 0 0 0 0 0 0
..............................................CTCGATATGCTTGGATCGTT............................................................................................................................................................................................................................................................................. 20 3 8 2.50 20 20 0 0 0 0 0 0 0 0 0 0
.............................TGCGGACACACGTACTGCCT.............................................................................................................................................................................................................................................................................................. 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.................................................GATATGCTTGGATCGTTT............................................................................................................................................................................................................................................................................ 18 2 3 2.00 6 6 0 0 0 0 0 0 0 0 0 0
......................GACCCCGTGCGGACACACGTACTGCCT.............................................................................................................................................................................................................................................................................................. 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.................................................GATATGCTTGGATCGTTTC........................................................................................................................................................................................................................................................................... 19 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
.................................................GATATGCTTGGATCGT.............................................................................................................................................................................................................................................................................. 16 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TTCATTCCAGACCACTACGAGGCGCGA................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................ACGTACTGCCTGGTATGCTTGGATCGTT............................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................CTTGGATCGTTGCATGGATTACAACTCC............................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................GATATGCTTGGATCGTTTCC.......................................................................................................................................................................................................................................................................... 20 3 5 1.00 5 5 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................CGTCAGGAGATCGACCAGGA.......... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................TTGGATTACAACTCCTCTTGT...................................................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................ATATGCTTGGATCGTT............................................................................................................................................................................................................................................................................. 16 1 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GAGTTCAATGTCAATGCCA........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................TATGCTTGGATCGTTT............................................................................................................................................................................................................................................................................ 16 1 6 1.00 6 5 0 0 0 1 0 0 0 0 0 0
..............................................CCTGGTATGCTTGGATCGTTGCATGG....................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ATTCCGTCAGTAGATC.................. 16 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................ATGGATTACAACTCCCCGTGT...................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................CGATATGCTTGGATCGTTTC........................................................................................................................................................................................................................................................................... 20 3 7 0.86 6 6 0 0 0 0 0 0 0 0 0 0
....................................................ATGCTTGGATCGTTTC........................................................................................................................................................................................................................................................................... 16 1 5 0.80 4 4 0 0 0 0 0 0 0 0 0 0
..................................................ATATGCTTGGATCGT.............................................................................................................................................................................................................................................................................. 15 1 8 0.75 6 6 0 0 0 0 0 0 0 0 0 0
.................................................................TGCTTGGATTACAACGCC............................................................................................................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................TGCTTGGATCGTTCCA.......................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................................CATGCTTGGATCGTT............................................................................................................................................................................................................................................................................. 15 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTCAGAATCTGATCCACC............................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CAGACGACTACGACGCGCGAC................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
...................................................TATGCTTGGATCGTTGCCA......................................................................................................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................TGGTGACCCAATGCGGA............................................................................................................................................................................................................................................................................................................ 17 2 14 0.21 3 0 0 0 0 0 0 0 0 0 3 0
....................................................ATGCTTGGATCGTTTCC.......................................................................................................................................................................................................................................................................... 17 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................CTCGATTCCGTCAGTAG..................... 17 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................GGTTCGATTCCGTCAGG....................... 17 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................GTCAATGCCAGCGCCA..................................................................................................................................................................................................... 16 1 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0
........TGGAAGCCGGTGGTATC...................................................................................................................................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................GACGAGGAGCGATTTCGTC.......................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
....................................................ATGCTTGGATCGTTT............................................................................................................................................................................................................................................................................ 15 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.................................................GATATGCTTGTATCGTT............................................................................................................................................................................................................................................................................. 17 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..........GAACCCGGTCGTGACC..................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................CGAATCAGAATCAGA..................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................GTACTGCCTGGTCGGC....................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CGATTCCGTCAGTAGC.................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................TGAAGCGATTCATGCCA................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CCTGAGAAACCTTCGGCCACCACTGGGGCACGCCTGTGTGCATGACGGACCATACGAACCTAGCAACGTACCTAATGTTGAGGGGCACAGGTAACACGTACAGTGGTGAACACCTCAAGTTACAGTTACGGTCACGGTCATGGTCACGGTCAGTCGTAGGCTTAGGCTTAGGCTTAGTCTTAGTCTAGGTGGACGTAGGCCCGAGTAGGAGCGGTCAAGGTAAACGCGACCGGTTCGCCGGTCACTGTTTCAAGGATCTTCGGCGTTACTTTGCTAAGTAAGGTCTGGTGATGCTCCGCGCTAAGGCAGTCCTCTAGCTGGTCCTCGGGAGCCAC
***********************************************************************************************************************************************************************************************************..((...........((((.(((...((((((..(((......(((.....))))))....))))))....))).))))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................................................................................................................AAACGCGACCGGTTCG.................................................................................................. 16 0 1 7.00 7 7 0 0 0 0 0
.............................................................................................................................................................................................................................................CCGGTCACTGTTTCAAGGATC............................................................................. 21 0 1 2.00 2 0 2 0 0 0 0
..............................................................................................................................................................................................................................AACGCGACCGGTTCG.................................................................................................. 15 0 3 1.67 5 5 0 0 0 0 0
................................................................................................................................................CACGGTCAGTCGTAGGCTTAG.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................................CCCGTTCACTGTTTCAAGGATC............................................................................. 22 2 1 1.00 1 0 1 0 0 0 0
................................................................................................................CCTCAAGTTACAGTTACGGTC.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................GTCTAGGTGGACGTAGGCCCG.................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................GTAGGAGCGGTCAAGGTAAAC.............................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................ACACGCGACCGGTTCG.................................................................................................. 16 1 8 0.75 6 6 0 0 0 0 0
............................................................................................................................................................................................................................TATACGCGACCGGTTCG.................................................................................................. 17 1 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................................................................................AAAACGCGACCGGTTCG.................................................................................................. 17 1 8 0.50 4 4 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GCAAGGTCTGGTGAAGCT........................................ 18 2 3 0.33 1 0 0 0 0 1 0
...............................................................................................................................................................................................................................ACGCGACCGGTTCGC................................................................................................. 15 0 4 0.25 1 1 0 0 0 0 0
..................ACCACTGGGACGGGCCTGT.......................................................................................................................................................................................................................................................................................................... 19 3 13 0.23 3 0 0 0 0 3 0
.................................................................................................................................................................TTAGGCTTAGGCTTAGTCTTA......................................................................................................................................................... 21 0 5 0.20 1 0 1 0 0 0 0
....................................................................................................................................................................................TAGTCTAAGTGGAGGTAG......................................................................................................................................... 18 2 9 0.11 1 0 0 1 0 0 0
.................................................................................................................................................................TTAGGCTTGGGCTTAGTCTTA......................................................................................................................................................... 21 1 10 0.10 1 0 1 0 0 0 0
...............................................................................................................................................TCCCGGTCAGTCGTAAG............................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0
..........................................................................ATGTTGGGAGGCACA...................................................................................................................................................................................................................................................... 15 2 20 0.05 1 1 0 0 0 0 0
..TGAGAAACCTTTGGCGA............................................................................................................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................................CGTGCAAAGGGAGTCCTC..................... 18 3 20 0.05 1 1 0 0 0 0 0

Generated: 04/24/2015 at 10:25 AM