ID:

dsi_8328

Coordinate:

3r:10755484-10755685 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10755307_10755483_+]; CDS [3r_10755307_10755483_+]; CDS [3r_10755686_10755860_+]; exon [3r_10755686_10755860_+]; intron [3r_10755484_10755685_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AATGCGGACTTACTTCCAAGGGAGCCGAGCACGTGGCCGACATGCTCAAGGTAATCCCTTAATCCCTTCAAATCTTTCCTTATTTCTAGAAATATATCCTAGCGATTTCAGTAGTATATGAAGAAATTCCATTGCGATATGTATAATGCATATTTTTACCCTCATTAATGGTTAGCTCAGCCCATACTTACATTACACGTATGTTTAGTTGTAAACTCCCCTAGTTAACCATAAAGTTTTCTTGTAACTCAGATGCAAAAGATCACCCGATTCACGGAGGGATGGGAGAAGTCCCTCCGCTA ************************************************(((((.....(((..(((((.((((......(((.((((.........)))).)))......)).)).)))))..)))..)))))((((((((...)))))))).............((((((((((.((.......((((((((.((....)).))).)))))......))))))))))))..((((.......))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR902009 testis
................................................................................................................................................................................................................................................................AAAAGATCACCTGATT..............................	16	1	1	1.00	1	0	1	0	0	0	0	0
.........TTACTTCCAAGGGAGCCGAGCACGTGGC.........................................................................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................ATACCGCCCTAGTTAACCATA.....................................................................	21	3	1	1.00	1	0	0	1	0	0	0	0
................................................................................................................................................................ATCATTAATGGCTAGCTCA...........................................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GGGTTGTGAGAAGTCCC.......	17	2	4	0.25	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AAAGATCACCTGATT..............................	15	1	9	0.22	2	0	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................GAGGGATGCAAGAAGTGCCTC.....	21	3	5	0.20	1	1	0	0	0	0	0	0
.......................................................................................................................................................................AAGGTTAGCTCAGCC........................................................................................................................	15	1	7	0.14	1	1	0	0	0	0	0	0
.......................................................................ATCTGTCCTTAGTACTAGA....................................................................................................................................................................................................................	19	3	16	0.13	2	0	2	0	0	0	0	0
.........................................................................................................................................................................CGTTAGCTCAGGCCCTAC...................................................................................................................	18	3	16	0.06	1	0	0	0	0	0	1	0
......................................................................................................................................................................GAAGGTTAGCTCAGCC........................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TCAAGGAGGGATTGGAGTA............	19	3	20	0.05	1	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................TGTAGCTCAGATGGAAA...........................................	17	2	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

TTACGCCTGAATGAAGGTTCCCTCGGCTCGTGCACCGGCTGTACGAGTTCCATTAGGGAATTAGGGAAGTTTAGAAAGGAATAAAGATCTTTATATAGGATCGCTAAAGTCATCATATACTTCTTTAAGGTAACGCTATACATATTACGTATAAAAATGGGAGTAATTACCAATCGAGTCGGGTATGAATGTAATGTGCATACAAATCAACATTTGAGGGGATCAATTGGTATTTCAAAAGAACATTGAGTCTACGTTTTCTAGTGGGCTAAGTGCCTCCCTACCCTCTTCAGGGAGGCGAT ************************************************(((((.....(((..(((((.((((......(((.((((.........)))).)))......)).)).)))))..)))..)))))((((((((...)))))))).............((((((((((.((.......((((((((.((....)).))).)))))......))))))))))))..((((.......))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	M023 head	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries
.........................................................................................................................................................................................TGAAAGTAATGCGCATAC...................................................................................................	18	2	8	1.13	9	3	0	1	3	2	0	0
.........................................................................................................................................................................................TGAAAGTAATGTGCATAC...................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0
........................................................................AGAAAGGGATAAGGATCTGTAT................................................................................................................................................................................................................	22	3	3	0.33	1	0	1	0	0	0	0	0
...........TGAAGGTTCCATCGGCCCGA...............................................................................................................................................................................................................................................................................	20	3	3	0.33	1	0	0	0	0	0	1	0
.............................................................................................................................................................................TCGAGTCTGGTATGGAT................................................................................................................	17	2	6	0.17	1	0	1	0	0	0	0	0
..............AGGTTCCCCCGGCTC.................................................................................................................................................................................................................................................................................	15	1	7	0.14	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................TTTTCTGGTGGGCTA...............................	15	1	11	0.09	1	0	0	1	0	0	0	0
........................................GTACGAGTTCCATGTGG.....................................................................................................................................................................................................................................................	17	2	11	0.09	1	0	0	1	0	0	0	0
....CCCAGAATGAAGGTTTCCT.......................................................................................................................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	1	0	0
.................................................................................................................................................................AGTAAATACCAAACGAGT...........................................................................................................................	18	2	13	0.08	1	0	0	0	0	0	0	1
.......................................................................TAGAAAGGAATAGAGAG......................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0
.............................................AGTTCCAATCGGGAAT.................................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0
.............................................................................................................................................................................TCGAGTCTGGTATGGA.................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0

Generated: 04/24/2015 at 10:49 AM