ID:

dsi_8173

 Coordinate:

3l:11837493-11837642 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.0 -25.9 -25.9

Flybase annnotation

five_prime_UTR [3l_11837676_11837801_-]; CDS [3l_11837643_11837675_-]; exon [3l_11837643_11837801_-]; intron [3l_11837169_11837642_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGATAAAACAGCGACAATGTACGGCGGAGACGAATACGCAACCAATTCGGTGAGTGCAACCAGCGAGCAATGATTCATTTTCGAGAAACCAATCCCCGGACTCCGCCGACAACATAACCCATCTTTTGTTGCCCTCGCACAAATACAAAACTCACTGGGATGATTTTAAATCCGTTTTACGACTTGGCATAGTTGGTGTTTAGATCATCATAGGCCATTAACCACTGGCAATCCGTGGCCAACCCCTTT
**************************************************((((((.......(((((....((((..((((...))))..))))..(((......))).(((((............)))))..)))))...........))))))..((((........))))......(((((......)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
....TAAAACAGCGACAATGTACGGCGGA............................................................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...ATAAAACAGCGACAATGTACGGCG............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................ATACGCAACCAATTCGGAG..................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............GACAATGTACGGCGGAGACGA........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..GATAAAACAGCGACAATGTACGGCGGA............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............GACAATGTACGGCGGA............................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............GACAATGTACGGCGGAGACGAAT...................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
AGGATAAAACAGCGACAATGTACGGC................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
................AATGTACGGCGGAGACGAATACGC.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................GCAACCAGCGAGCAATGAT............................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................AATGTACGGCGGAGACGAATACGCA................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......AACAGCGACAATGTACGGCGGAGAC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................CGGAGACGAATACGCAACC.............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.............GACAATGTACGGCGGAGACG......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..........AGCGACAATGTACGGTGGA............................................................................................................................................................................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TCACTGGGCTGATATTA................................................................................. 17 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................AATCCGTTGTACGAGTT................................................................ 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................ATCATAAACCATTAACCAGT....................... 20 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.............................................ATTCGGTGATTGCAA.............................................................................................................................................................................................. 15 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TCCTATTTTGTCGCTGTTACATGCCGCCTCTGCTTATGCGTTGGTTAAGCCACTCACGTTGGTCGCTCGTTACTAAGTAAAAGCTCTTTGGTTAGGGGCCTGAGGCGGCTGTTGTATTGGGTAGAAAACAACGGGAGCGTGTTTATGTTTTGAGTGACCCTACTAAAATTTAGGCAAAATGCTGAACCGTATCAACCACAAATCTAGTAGTATCCGGTAATTGGTGACCGTTAGGCACCGGTTGGGGAAA
**************************************************((((((.......(((((....((((..((((...))))..))))..(((......))).(((((............)))))..)))))...........))))))..((((........))))......(((((......)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
.....................................................................................................TTGGCGGCTGTTGTATTGGGTAG.............................................................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................AGCTGCTGTATTGGCTAGAAA........................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
TCCTATTTTGTCGCTGTTACA..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................TGCTGCTGTATTGGCTAGAAA........................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................................AACAAGTGGAGCGTGTTTATGTT..................................................................................................... 23 2 2 0.50 1 0 0 0 0 1 0 0 0
......................................................................................................................................GAGCGAGTTTATGTTTGGA................................................................................................. 19 2 2 0.50 1 0 0 0 1 0 0 0 0
TCCTATTTTTTCGCTG.......................................................................................................................................................................................................................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CCGATAGGCTCCGGTTGGC.... 19 3 13 0.15 2 0 0 0 0 0 2 0 0
.....................................................................................................................................................................................................................................GATAGGCTCCGGTTGG..... 16 2 20 0.15 3 0 0 0 0 0 3 0 0
.................................................................................................................................................................................................................................GGCCGATAGGCTCCGGTTGG..... 20 3 8 0.13 1 0 0 0 1 0 0 0 0
.............................................................................................AGGGTCCCGAGGCGGCTG........................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................ACCGTATCAAATACCAATCT............................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................CGATAGGCTCCGGTTGG..... 17 2 14 0.07 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................TGGCCGATAGGCTCCGGTT....... 19 3 15 0.07 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................TAGGCACCGGTCGTGGAA. 18 2 16 0.06 1 0 0 0 0 0 1 0 0
..............................................AAGCCACTCTCATTGG............................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0
....................................................................................................TGTGGCTGCTGCTGTATTGG.................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................CAACGGGAGAGGTTTTATG....................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
.....................................................................................................................................AGAGCGTGTTTATGT...................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:39 AM