ID:

dsi_8093

Coordinate:

3l:16253223-16253372 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-41.1	-41.0	-40.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCAGATTCCATCACCGCCATGCTGGAAGAGGCACGTTGGCCCCAGCCCTGGAGCCTTTGAGAACGGAACGTGTCCTCACGCGAGTACACTCCGAGCCGTTATAAACGCTCCCAGATGCACTTCAAAGTCTGTTGTCGTGGTGTCGCAGTTTGAAATACATGCTCGTTGTGGCTGTCGAAAATCCGAGCAAACGACTTTGAAGTCAATCGCCGGACTTGCGTCAAATCTCCAATGGCTTTCGATCGAATTC ************************************************((((.((((..(((((...((((.(((....))).))))......))))).)))).))))...........((((((((..((((((.(((.(((((((......((((.......)))))))).)))..)))))).)))..))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.................................................................................................................................................................................................................................TCTCCAATGGCTTTCGATCGAATT.	24	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TGTGGCTGTCGAAAATCCGAGCAAACGA........................................................	28	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................TGGTGTCGGAGTTTAAAA...............................................................................................	18	2	4	0.25	1	1	0	0	0	0	0
..................................GTCGGCGCCAGCCCTGGGG.....................................................................................................................................................................................................	19	3	9	0.11	1	0	1	0	0	0	0
.............................................................................................................................................................CATCCTCGTTGTGGC..............................................................................	15	1	11	0.09	1	0	0	0	1	0	0
...................................................................................................................................................................CGTTGTGGCGGTCGA........................................................................	15	1	12	0.08	1	0	0	0	0	1	0
..........................AGAGGTACGTTGGCCT................................................................................................................................................................................................................	16	2	18	0.06	1	0	0	0	0	0	1
......................................................................................TACTCCGTTCCGTTATAAA.................................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0
...................................................................................................TATCAACGCTCCCTGA.......................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0

Anti-sense strand reads

GGTCTAAGGTAGTGGCGGTACGACCTTCTCCGTGCAACCGGGGTCGGGACCTCGGAAACTCTTGCCTTGCACAGGAGTGCGCTCATGTGAGGCTCGGCAATATTTGCGAGGGTCTACGTGAAGTTTCAGACAACAGCACCACAGCGTCAAACTTTATGTACGAGCAACACCGACAGCTTTTAGGCTCGTTTGCTGAAACTTCAGTTAGCGGCCTGAACGCAGTTTAGAGGTTACCGAAAGCTAGCTTAAG ************************************************((((.((((..(((((...((((.(((....))).))))......))))).)))).))))...........((((((((..((((((.(((.(((((((......((((.......)))))))).)))..)))))).)))..))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M053 female body	SRR1275483 Male prepupae	M023 head
.....................................................................................................................................................................................AGGCGCGTTTGCTGAA.....................................................	16	1	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................CGAGGGTCTATGTTAAGTTT............................................................................................................................	20	2	2	0.50	1	0	1	0	0	0	0	0
..............................................................................................CGGCGATATTTGCGAGTCT.........................................................................................................................................	19	3	10	0.20	2	0	0	2	0	0	0	0
.....................................CCGTGGTCGGGGCCTCGG...................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	1	0	0	0
..........................................................................................................CGAGGGTCTAGTTGAAGTT.............................................................................................................................	19	2	9	0.11	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................TCAGCTAGCAGCCTGAA.................................	17	2	11	0.09	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................TGATCGCAGGTTAGAAGTT..................	19	3	14	0.07	1	0	0	0	0	0	0	1
...........................................................................AGTGCTCTCAAGTGAG...............................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0
..................................................................................................TATATTTGCGAGGGTTT.......................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0

Generated: 04/24/2015 at 03:30 AM