ID:

dsi_8036

 Coordinate:

x:616355-616504 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.8 -8.4 -8.4

Flybase annnotation

Antisense to three_prime_UTR [x_615867_616558_+]; Antisense to exon [x_615718_616558_+]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+

Sense Strand Reads

AGTTGCTATCTTTCGGGCTTGGGTGGTGCATCGAACACAGTTTTTCCTTCTCTTTATTAAACAATGTAAATTTATTTATTTGCCTTAATTGTACACATATAAATTGCCTAAAACTTTTATTGTTTATTTCCCTTTCTTTTCTTTTCCTTTCTTTTCGCTTATCTTTTCTTTTTCTTTGTTTTTTTGCGGTGTTTTTGCAGCTTGTATCAAGCACCCCGCCGGATTTGGATTCGCTATGCAGCGATCCATC
**************************************************.......(((((((((..(((((((.....(((.......))).....)))))))............))))))))).........................................................((((((.....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................TATCTTTTCCTTTCTTTTCTATTAT........................................................................................ 25 3 1 2.00 2 0 2 0 0 0 0 0
..............................................................................................................................................................TTATCTTTTCTTTTTCTTTGT....................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
......TATCTTTCGGGCTTGGGTGGTGCAT........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..........TTTCGGGCTTGGGTGGTGCAT........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGGATTCGCTATGCAGCGAT..... 20 0 1 1.00 1 0 0 0 1 0 0 0
......TATCTTTCGGGCTTGGGTGGTGTT............................................................................................................................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................GTGTTTGTACAGCTTGTA............................................ 18 2 10 0.40 4 0 0 0 0 3 1 0
........................................................................................................................................................................................................TTTGAATCAGGCACCCCG................................ 18 3 20 0.10 2 0 0 0 0 0 2 0
...............................................................................................................................................................................TTGTTTTTTGGCGGTATTTTA...................................................... 21 3 20 0.05 1 0 0 0 0 0 0 1
.................CTTGGTTCGTGCATCG......................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
TCAACGATAGAAAGCCCGAACCCACCACGTAGCTTGTGTCAAAAAGGAAGAGAAATAATTTGTTACATTTAAATAAATAAACGGAATTAACATGTGTATATTTAACGGATTTTGAAAATAACAAATAAAGGGAAAGAAAAGAAAAGGAAAGAAAAGCGAATAGAAAAGAAAAAGAAACAAAAAAACGCCACAAAAACGTCGAACATAGTTCGTGGGGCGGCCTAAACCTAAGCGATACGTCGCTAGGTAG
**************************************************.......(((((((((..(((((((.....(((.......))).....)))))))............))))))))).........................................................((((((.....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 M053
female body
 GSM343915
embryo
..................................................................................................................................................................................................................CGTGGGGCGGCCTAAACCTAAGCGAT.............. 26 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GGGGCGGCCTAAACCTAAGCGATACGT.......... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAGCGATACGTCGCTAGGTAG 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..........................................AAAGGAAGAGAAATAATTTGTTACA....................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................ACCACGTAGCTTGTGTCAAAAAGGAAG........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGTTCGTGGGGCGGCCTAAACCT..................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGTGGGGCGGCCTAAAC....................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAACATAGTTCGGGGGGCGGCCT........................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATAAAGGGAAAGAAAAGAAAAGGAA..................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................................AGAGAAATAATTTGTTACATTTAAAT................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCGTGGGACGGCCTAAACCTAAGCGAT.............. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTCGTGGGGCGGCCTA.......................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................AGAAATAATTTGTTACATTTAAATAAAT............................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................AAAGGAAGAGAAATAATTTGT........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................CTTGTGTCAAAAAGGAAGAGAAATAA................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................CCACCACGTAGCTTGTGTCAAAAAGGA.......................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................AGAAACAAAAAAACGCCACAAAAACGT................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................CGTAGCTTGTGTCAAAAAGGAAGAGAAAT.................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGAAAAGAAAAAGAAACAAAAAAACGCCAC........................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............CCCGAACCCACCACGTAGCTTGTGTCAA................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................AAATAAAGGGAAAGAAAAGAAAAGGAA..................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................AGCTTGTGTCAAAAAGGAAGAGAAAT.................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGCCTAAACCTAAGCGATACGTCGCTA..... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...........................................AAGGAAGAGAAATAATTTGTTACAT...................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ATTTAACGGATTTTGAAAATAACAAAT............................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................CGGCCTAAACCTAAGCGATACGTCGCTAGGT.. 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AAAGAAAAGGAAAGAAAAGCGAATAGA...................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAGTTCGTGGGGCGGCCTAAACCTA.................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAACGTCGAACATAGTTCGTGGGGCGG.............................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................AGAAAAGGAAAGAAAAGCGAATAGAAA.................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................CAAAAAGGAAGAGAAATAATTTGTTACAT...................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCGTGGGGCGGCCTAAACCTAAGCGATAC............ 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
............................................AGGAAGAGAAATAATTTGTTACATT..................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................TTGTGTCAAAAAGGAAGAGAAATAAT............................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................ATTAACATGTGTATATTTAACGGAT............................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................GGGCGGCCTAAACCTAAGCGATACGT.......... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GATACGTCGCTAGGTA. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGCCTAAACCTAAGCGATACG........... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................AGGGAAAGAAAAGAAAAGGA...................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................TGTCAAAAAGGAAGAGAAATAATTT............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................AGGAAGAGAAATAATTTGTTACAT...................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................AGAAAAGAAAAGGAAAGAAAAGCGAAT......................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................AAAAGAGAAATAATTTGTTACAT...................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................ACGGATTTTGAAAATAACAAATAAAGGGA..................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................CTTGTGTCAAAAAGGAAGAGAAA................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................GGCGGCCTAAACCTAAGCGAT.............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCGTGGGGCGGCCTA.......................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAAGAAAAAGAAACAAAAAAACGCCACA.......................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................AGCTTGTGTCAAAAAGGAAGAGAAATA................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGTGGGGCGGCCTAAACCTAA................... 21 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
........................................AAAAAGGAAGAGAAAAAATTT............................................................................................................................................................................................. 21 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.........GAAAGGCCGAACCCCCCA............................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................AGGGAAAGAAAAGAAA.......................................................................................................... 16 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................AAGGGAAAGAAAAGAA........................................................................................................... 16 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................AAAAGAGAAGGAAAGAGAAGTGAA.......................................................................................... 24 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
...............................................AAGAGAAAGAATTTG............................................................................................................................................................................................ 15 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................AAAGGGAAAGAAAAG............................................................................................................. 15 0 12 0.08 1 0 1 0 0 0 0 0 0 0 0
................................................AGAGAAATAATTTGGT.......................................................................................................................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.CAATGGTAGAAAGCCC......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:616305-616554 - dsi_8036 AGTTGC---TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTGGTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---TCCTTC-TCTTTATTAAACAATGTAAATTTATTTATTT-GCCTTAATTG--TACACATATAAATTGCCTAAAACTTTTATTGTTTATTTC----CCTTTCT---------TTTCTTTTCCTTTCT----------------------------TT----TCGCT---TATC-TTTTCTTTTTCTTTGTTTTTTTGCGGTGTTTTTGCAG-CTTGTATCAAGCACCCCG----CCGGATTTGGA------TTCGCTATGC-------------------------------A-----------GCGA---TCCATC
droSec2 scaffold_10:552470-552719 - AGTTGC---TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---GCCTTC-TCTTTATTAAACAATGTAAATTTATTTATTT-GCCTTAATTG--TACACATATAAATTGCCTAAAACTTTTATTGTTTATTTC----CCTTTCT---------TTTCTTTTCCTTTCT----------------------------TT----TCGCT---TATC-TTTTCTTTTTCTTTGTTTTTTTGCGGTGTTTTTGCAG-CTTGTATCAAGCACCCCG----CCGGATTTGGA------TTCGCTATGC-------------------------------A-----------GCGA---TCCATC
dm3 chrX:701975-702231 - AGTTTC---TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---GCCTTC-TCTTTATTAAACAATATAAATTTATTTATTT-GCCTTAATTT--TACACATATAAATTGCCTAAAACTGTTATTGTTTATTTC----CCTTTCT---------CTTCTTTTCTTTTCT----------------------------TTCGGTTCGCTTGTTATC-TTTTCTTTTTCTTTTGTTTTTTGCGGTGTTTTTGCAG-CTTGTATCAAGCACTCCG----CCGGATTCGGA------TTCGCTATGC-------------------------------A-----------GCGA---TCCATC
droEre2 scaffold_4644:671908-672155 - CGTTTC---AA-------------------------------------------T-CTTTCGGGC---T-----------TTCTTTTGGGTAGTGTATT-------------------------------------------G----TACA---------------AACA--GTTTT---GTCTAC-TCTTTATTAAACAACGTAAATTGATTTATTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTGTTATTGTTTACTTT----CTTTCCT---------TTTCTTTTC----------------------------------------------------------------ATTGTTTTGTTGCGGTGTTCTTGCAG-TTTGTATCAATCAACCCG----CCGGATTCGGA------TTCGCTATGCAGTCAGT------------ATCTATC-GCATG-----------GCGA---TCCATT
droYak3 X:631310-631580 - CGTTTC---TA-------------------------------------------T-CCTTCGGGC--------------------TTGGG-ATTGG-G-------------------------------------------------TACACAGATTCGCAGA--GCACA--GTTTT---GTGTTC-GCTTTATTAAACAACGTA-ATTGATTTATTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTGTTATTGTTTACTTT----CATTTCT---------TTTGTTTTCTTTTCT----------------------------T--------------------TTCTTTTGCTTTGTT-TTTTGCGGTGTTCTTGCAG-TTTGTATCAATCACCCCG----CCGGATTTGGATTCGGATTCGCTATGCAGTCAGT------------ATCTATC-GCATG-----------GCGA---TCCATC
droEug1 scf7180000409277:962560-962811 - AGTTTT---GAA-----TCTCTCTGGTGGCGGGTTACGGTTTACGGATTTTTAAT---TTCTGGT---T----------------ATGGGTATTGTAGA-------------------------------------------G----C-----------------GCACA--GTTTT--TGT---C--TTTTATTAAACAATGTAAATTTATTTATTT-GCCTTATTTT--ACTACATATAAATTGCCTAAAACTGTTACCGATTCTTTT----CGTTT---------------------------------------CCTTGC----------------------------------------------------TATAATTTTGCAG-TTTGTATCAATCACCC---TCGCCTG------A------TTCGCTGTGCGGCCAGT------------ATCTATCGGCACA-----------GCGA---TCCATC
droBia1 scf7180000302069:108762-108961 + CGTTTT---TAC------------------------------------------T-CCTTTGGGT---TC---------------TCGGGTAT--------------------------------------------------------------------------------------------------TTTTAAACAATTTAAATTGATTTATTT-TTCTTAATTT--TATACATATAAATTGCCTAAAACTGTTATCGTTTCTTTTCTTT-------------------------------------TCGTTTTCCTTGC----------------------------------------------------AATGTTTTTGCAG-TTTGTATCAATCATCC---CCGTCGT------A------TTCGCTATGCAGACAGA------------ATTTATCGGCACA-----------GTGATT--TCATC
droTak1 scf7180000415704:805076-805321 + CGTTTT---GAATTGAATT------------------------------TTGAATTTCTTCGGGT---C--------------GTTTGGGTAG-GTAT-------------------------------------------------A-----------------ATACC--TTTAT---ATGGAG-TTTTTATTAAACAATGTAAATTGATTTATTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTTGTATCGTTTCTTAT----CCTTTCT---------TTTATTTTCTTTTCTTA----TCGTTTTCCTTGC----------------------------------------------------TATGCTTTTGCAGCTTTTTATTGATTAACC-C-CCGCCGGATTTGGA---------------------------------------ATCGGCACA-----------GCGATT--CCATC
droEle1 scf7180000491013:1239876-1240123 - ACCGTCGTTGTTTTGAATC------------------------------TTTCAT-CTTTCGGGT---T----------------TTGGGTATTGTAGC-------------------------------------------TAGCAT--A--C-----------ACACA--GTTT---TGT---C-TTTTTATTAAACAATGTAAATTGATTTATTT-TCCTTAATTTTATACATATATAAATTGCCTAAAACTGTTATCGTTTCATTTCTTT-------------------------------------TCGTTTTCCTTGCTCTGCT-----------------------TTTTTTTTTC-----------------TTTTTTCAG-TTTATATCAATTACCCC---GGCCGG------A------TTCGCTCTGCAATCAGT------------AT----------------------GCGATT--CCATC
droRho1 scf7180000779976:556089-556330 + TT-------GCTTTCAATC------------------------------TTTAAT-CTTTCGGGT---T----------------TTGGGTATTATAGC-----------------------------------------------AT--A--AAT----AGAGCTCACA--CTTT---TGT---C-TTTTTATTAAACAATGTAAATTGATTTATTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTGTTACCGTTTCCTTTCTTT-------------------------------------TCGTTTTCCTTGCTCTGTT-------------------------------------------------TTTTTTTCAG-TTTATATCAATAACCCCG---GCCGA------A------TTCGCTATGCTAT--GT------------TTCTACCGGCGCA-----------GCGATT--CCATC
droFic1 scf7180000454072:2410950-2411195 + GACTTC---AA-------------------------------------------T-CTTTCAGAT---T----------------TTGGGTATTGCAGC------------------------------------ATTCATTTAGA----G--AG---------CGCACG--GTTTT-TTGC---C-CATTTATTAAACATTGTAA---------TTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTGTTATCATTTCTTT----------AT---------TTTATTTTCTTGTCTTATTTTTCGTTTTTCTTGC----------------------------------------------------TATGCTTTTGCAG-TTTGTTTCAATCACCAC---GGCCGG------A------TTCGCTATGCAGACAAT-------------CCTATCGGCACA-----------GCAATT--TCATC
droKik1 scf7180000302610:1038681-1038861 + AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA--GTGTTTTTG---TC-TTTTTATTAAACAATGTAAATTGATTTATTT-GCCTTAATTT--TATTCATATAAATTGCCTAAAACTGTTATCGTTTCTTTC----CTTTT---------------------------------------CTTTGCTATGTT--------------------------------------TTTTTTTAAATATTTTT-CTGTTTTTTATCAATCACCC-A-ACGAACG------A------TTCGCTTT-------------------------------ATA-----------GCGATT--CCATC
droAna3 scaffold_12929:451806-452102 - AATGTT---TT-------------------------------------------T-CATTCTGGTAGTTCTAAGGGGGCTT-CTT------------CTGCAGACATTCTTCAGATCCTATTCTCCCCAAA-ACCCTTCA----------A--AT-TT-------AAACA--CTAT---TTT---C--TTATATTAAACAATGTAAATTGATTTATTTTGCCTTAAATG--TATACATATAAATTGCCTAAAACTTGAACCGCTT----TCGTT-------------------------------------TCGTTTGCTTTGCTAA---TATTT----TCAGT---TATT-T---CCATTTAA------TTTTC-----------CGG-TT---TTCAATCACCC---TCGACCG------A-------TCGCTGTACAGT--GTTGCCTCAGTTTAAACAACTGGCACA-----------GCAGTGACACACT
droBip1 scf7180000394534:99538-99800 + GTTTTA---TAG-----TT------------------------------TT-----TATTCTGGT---A---A-GGGGCTTTCTTTCC----------------------------------------AAACACCCTTAATAAA--AA--A--AA-----------TAAA--CCAT---TAT---C-TTTATATTAAACAATGTAAATTGATTTATTTTGCCTTAAATT--TATACATATAAATTGCCTAAAACTTGAACCGTTT----TCGTT-------------------------------------TCGTTTGCTTTGCTAA---TATTT----TCAGT---TATATT---CCACTTCATTTTCCACTTC-----------CGG-TT--TTTCAATCACCC---TCGACCG------A-------TCGCTGTACAGT--G---------------TTACCTCCACA-----------GCAATG--ACATA
dp5 XL_group3a:2491806-2492043 - ATTAGT---AT-------TTCTACTACGGGGGCAAACGGATAGG-------------------------------------------GGATAATGGGGG---------------------------------------------------A--AT-----------CAAATGGCG-----G---TATGCTTATTTAAACAATGTAAATTGATTTATTT-TCCTTAATTTAGTAACTATATAAATTGCCTAAAACTTGTATTATTT----C----CCGTTCTGTGCTGTC--------TTTTTTCT----------------------------TA----TTGCT---T---------------------------------------AGC----TCCTAA---TCGCAGTC----GATTGGG-------TTTCCTAGGCA--------------------CTATCTTCATAGCTATTCCACATTTA---TGTACG
droPer2 scaffold_11:2191119-2191369 + ATTAGT---AT-------TTCTACTACGGGGGCAAAGGGATAGG-------------------------------------------GGATGATGGGGG--------------G---------------------AATCAAATGGT----A--AT-----------CAAATGGCG-----G---TATGCTTATTTAAACAATGTAAATTGATTTATTT-TCCTTAATTTAGTAACTATATAAATTGCCTAAAACTTGTATTATTT----C----CCGTTCTGTGCTGTC-------TTTTTTTCT----------------------------TA----TTGCT---T---------------------------------------AGC----TCCTAA---TCGCAGTC----GATTGGG-------TTTCCTAGGCA--------------------CTATCTTCATAGCTATTCCACATTTA---TGTACG
droWil2 scf2_1100000004909:10942170-10942309 + TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTTAAACATTGTAAATTGATTTATTTCTCCTTAAA-CATTTCTAATATAAATTGCCTAAAATTGTAATTCCATATTTT----TTCT--------GTCTTTAATTTTTTTTTTT----------------------------TT----TTTTG---TTTC-ATATAT---------------------ATTTATG-------------------------------------------------------------------------------------------------T-ATT--TTATT
droMoj3 scaffold_6473:6460201-6460211 - AGTTTT---AA-------------------------------------------T-CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTTGC---TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTGGTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---TCCTTC-TCTTTATTAAACAATGTAAATTTATTTATTT-GCCTTAATTG--TACACATATAAATTGCCTAAAACTTTTATTGTTTATTTC----CCTTTCT---------TTTCTTTTCCTTTCT----------------------------TT----TCGCT---TATC-TTTTCTTTTTCTTTGTTTTTTTGCGGTGTTTTTGCAG-CTTGTATCAAGCACCCCG----CCGGATTTGGA------TTCGCTATGC-------------------------------A-----------GCGA---TCCATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................T---TATC-TTTTCTTTTTCTTTGT...............................................................................................................................2111.00100000100000000000
.........TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTGGTGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.........................................................TTTCGGGC--------------------TTGGGTGGTGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGGA------TTCGCTATGC-------------------------------A-----------GCGA---T.....2011.00100000000001000000
.........TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTGGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
droSec2
AGTTGC---TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---GCCTTC-TCTTTATTAAACAATGTAAATTTATTTATTT-GCCTTAATTG--TACACATATAAATTGCCTAAAACTTTTATTGTTTATTTC----CCTTTCT---------TTTCTTTTCCTTTCT----------------------------TT----TCGCT---TATC-TTTTCTTTTTCTTTGTTTTTTTGCGGTGTTTTTGCAG-CTTGTATCAAGCACCCCG----CCGGATTTGGA------TTCGCTATGC-------------------------------A-----------GCGA---TCCATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................TGCGGTGTTTTTGCAG-CTTGT....................................................................................................2111.0011000
dm3
AGTTTC---TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---GCCTTC-TCTTTATTAAACAATATAAATTTATTTATTT-GCCTTAATTT--TACACATATAAATTGCCTAAAACTGTTATTGTTTATTTC----CCTTTCT---------CTTCTTTTCTTTTCT----------------------------TTCGGTTCGCTTGTTATC-TTTTCTTTTTCTTTTGTTTTTTGCGGTGTTTTTGCAG-CTTGTATCAAGCACTCCG----CCGGATTCGGA------TTCGCTATGC-------------------------------A-----------GCGA---TCCATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................TCT----------------------------TTCGGTTCGCTTGTTATC-...............................................................................................................................................21110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACACA--...................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000000000000000010
..........A-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTG................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGA------TTCGCTATGC-------------------------------A-----------GCGA---T.....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........A-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
...............................................................GC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------..........................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGA------TTCGCTATGC-------------------------------A-----------GCG..........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TAGTGCATC-------------------------------------------G----A-----------------ACACA--GT.................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TTGCCTAAAACTGTTATTGTT.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GTTTTTTGCGGTGTTTTTGCA...........................................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------A.........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................................................................................................................................................................................................................................CTTTCT---------CTTCTTTTCTTTTCT----------------------------TTCGGTT...........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GGGC--------------------TTGGGTAGTGCATC-------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACACA--GA.................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGGA------TTCGCTATGC-------------------------------A-----------GC...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CG----CCGGATTCGGA------TTCGCTAT..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTC---TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTG................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................TTATTTC----CCTTTCT---------CTTCTTT......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTTGCAG-CTTGTATC.................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................TAGTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---G..........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CTCCG----CCGGATTCGGA------TTCGC.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TTTC----CCTTTCT---------CTTCTTTTCT...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---GCC........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................GTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---GC.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCCG----CCGGATTCGGA------TT................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................GC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACACA--GTT................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................................................................................................................................TTCTTTTCT----------------------------TTCGGTTCGCTT......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..........................................................................................TAGTGCATC-------------------------------------------G----A-----------------ACACA--GTTTT---...........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................C--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACAC......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTTTGCGGTGTTTTTGCAG-CTTGTA...................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTTTCTTTTCT----------------------------TTCGGTTCGC........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GGC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------AT........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GTAGTGCATC-------------------------------------------G----A-----------------ACACA--GTTT...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AG-CTTGTATCAAGCACTCCG----CC.................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....C---TA-------------------------------------------T-CTTTCGGGC--------------------TTGGGTAGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................TGGGTAGTGCATC-------------------------------------------G----A-----------------ACACA--GT.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TCT----------------------------TTCGGTTCGCTTGTTATT-...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GC--------------------TTGGGTAGTGCATC-------------------------------------------G----A-----------------ACA.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGA------TTCGCTATGC-------------------------------A-----------GCGA---......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................T-CTTTCGGGC--------------------TTGGGTAGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
droEre2
CGTTTC---AA-------------------------------------------T-CTTTCGGGC---T-----------TTCTTTTGGGTAGTGTATT-------------------------------------------G----TACA---------------AACA--GTTTT---GTCTAC-TCTTTATTAAACAACGTAAATTGATTTATTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTGTTATTGTTTACTTT----CTTTCCT---------TTTCTTTTC----------------------------------------------------------------ATTGTTTTGTTGCGGTGTTCTTGCAG-TTTGTATCAATCAACCCG----CCGGATTCGGA------TTCGCTATGCAGTCAGT------------ATCTATC-GCATG-----------GCGA---TCCATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CGTTTC---TA-------------------------------------------T-CCTTCGGGC--------------------TTGGG-ATTGG-G-------------------------------------------------TACACAGATTCGCAGA--GCACA--GTTTT---GTGTTC-GCTTTATTAAACAACGTA-ATTGATTTATTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTGTTATTGTTTACTTT----CATTTCT---------TTTGTTTTCTTTTCT----------------------------T--------------------TTCTTTTGCTTTGTT-TTTTGCGGTGTTCTTGCAG-TTTGTATCAATCACCCCG----CCGGATTTGGATTCGGATTCGCTATGCAGTCAGT------------ATCTATC-GCATG-----------GCGA---TCCATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AGTTTT---GAA-----TCTCTCTGGTGGCGGGTTACGGTTTACGGATTTTTAAT---TTCTGGT---T----------------ATGGGTATTGTAGA-------------------------------------------G----C-----------------GCACA--GTTTT--TGT---C--TTTTATTAAACAATGTAAATTTATTTATTT-GCCTTATTTT--ACTACATATAAATTGCCTAAAACTGTTACCGATTCTTTT----CGTTT---------------------------------------CCTTGC----------------------------------------------------TATAATTTTGCAG-TTTGTATCAATCACCC---TCGCCTG------A------TTCGCTGTGCGGCCAGT------------ATCTATCGGCACA-----------GCGA---TCCATCSizeHit CountTotal NormTotal
No Reads
droBia1
CGTTTT---TAC------------------------------------------T-CCTTTGGGT---TC---------------TCGGGTAT--------------------------------------------------------------------------------------------------TTTTAAACAATTTAAATTGATTTATTT-TTCTTAATTT--TATACATATAAATTGCCTAAAACTGTTATCGTTTCTTTTCTTT-------------------------------------TCGTTTTCCTTGC----------------------------------------------------AATGTTTTTGCAG-TTTGTATCAATCATCC---CCGTCGT------A------TTCGCTATGCAGACAGA------------ATTTATCGGCACA-----------GTGATT--TCATCSizeHit CountTotal NormTotal
No Reads
droTak1
CGTTTT---GAATTGAATT------------------------------TTGAATTTCTTCGGGT---C--------------GTTTGGGTAG-GTAT-------------------------------------------------A-----------------ATACC--TTTAT---ATGGAG-TTTTTATTAAACAATGTAAATTGATTTATTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTTGTATCGTTTCTTAT----CCTTTCT---------TTTATTTTCTTTTCTTA----TCGTTTTCCTTGC----------------------------------------------------TATGCTTTTGCAGCTTTTTATTGATTAACC-C-CCGCCGGATTTGGA---------------------------------------ATCGGCACA-----------GCGATT--CCATCSizeHit CountTotal NormTotal
No Reads
droEle1
ACCGTCGTTGTTTTGAATC------------------------------TTTCAT-CTTTCGGGT---T----------------TTGGGTATTGTAGC-------------------------------------------TAGCAT--A--C-----------ACACA--GTTT---TGT---C-TTTTTATTAAACAATGTAAATTGATTTATTT-TCCTTAATTTTATACATATATAAATTGCCTAAAACTGTTATCGTTTCATTTCTTT-------------------------------------TCGTTTTCCTTGCTCTGCT-----------------------TTTTTTTTTC-----------------TTTTTTCAG-TTTATATCAATTACCCC---GGCCGG------A------TTCGCTCTGCAATCAGT------------AT----------------------GCGATT--CCATCSizeHit CountTotal NormTotal
No Reads
droRho1
TT-------GCTTTCAATC------------------------------TTTAAT-CTTTCGGGT---T----------------TTGGGTATTATAGC-----------------------------------------------AT--A--AAT----AGAGCTCACA--CTTT---TGT---C-TTTTTATTAAACAATGTAAATTGATTTATTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTGTTACCGTTTCCTTTCTTT-------------------------------------TCGTTTTCCTTGCTCTGTT-------------------------------------------------TTTTTTTCAG-TTTATATCAATAACCCCG---GCCGA------A------TTCGCTATGCTAT--GT------------TTCTACCGGCGCA-----------GCGATT--CCATCSizeHit CountTotal NormTotal
No Reads
droFic1
GACTTC---AA-------------------------------------------T-CTTTCAGAT---T----------------TTGGGTATTGCAGC------------------------------------ATTCATTTAGA----G--AG---------CGCACG--GTTTT-TTGC---C-CATTTATTAAACATTGTAA---------TTT-GCCTTAATTT--TATACATATAAATTGCCTAAAACTGTTATCATTTCTTT----------AT---------TTTATTTTCTTGTCTTATTTTTCGTTTTTCTTGC----------------------------------------------------TATGCTTTTGCAG-TTTGTTTCAATCACCAC---GGCCGG------A------TTCGCTATGCAGACAAT-------------CCTATCGGCACA-----------GCAATT--TCATCSizeHit CountTotal NormTotal
No Reads
droKik1
AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA--GTGTTTTTG---TC-TTTTTATTAAACAATGTAAATTGATTTATTT-GCCTTAATTT--TATTCATATAAATTGCCTAAAACTGTTATCGTTTCTTTC----CTTTT---------------------------------------CTTTGCTATGTT--------------------------------------TTTTTTTAAATATTTTT-CTGTTTTTTATCAATCACCC-A-ACGAACG------A------TTCGCTTT-------------------------------ATA-----------GCGATT--CCATCSizeHit CountTotal NormTotal
No Reads
droAna3
AATGTT---TT-------------------------------------------T-CATTCTGGTAGTTCTAAGGGGGCTT-CTT------------CTGCAGACATTCTTCAGATCCTATTCTCCCCAAA-ACCCTTCA----------A--AT-TT-------AAACA--CTAT---TTT---C--TTATATTAAACAATGTAAATTGATTTATTTTGCCTTAAATG--TATACATATAAATTGCCTAAAACTTGAACCGCTT----TCGTT-------------------------------------TCGTTTGCTTTGCTAA---TATTT----TCAGT---TATT-T---CCATTTAA------TTTTC-----------CGG-TT---TTCAATCACCC---TCGACCG------A-------TCGCTGTACAGT--GTTGCCTCAGTTTAAACAACTGGCACA-----------GCAGTGACACACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GTTTTA---TAG-----TT------------------------------TT-----TATTCTGGT---A---A-GGGGCTTTCTTTCC----------------------------------------AAACACCCTTAATAAA--AA--A--AA-----------TAAA--CCAT---TAT---C-TTTATATTAAACAATGTAAATTGATTTATTTTGCCTTAAATT--TATACATATAAATTGCCTAAAACTTGAACCGTTT----TCGTT-------------------------------------TCGTTTGCTTTGCTAA---TATTT----TCAGT---TATATT---CCACTTCATTTTCCACTTC-----------CGG-TT--TTTCAATCACCC---TCGACCG------A-------TCGCTGTACAGT--G---------------TTACCTCCACA-----------GCAATG--ACATASizeHit CountTotal NormTotal
No Reads
dp5
ATTAGT---AT-------TTCTACTACGGGGGCAAACGGATAGG-------------------------------------------GGATAATGGGGG---------------------------------------------------A--AT-----------CAAATGGCG-----G---TATGCTTATTTAAACAATGTAAATTGATTTATTT-TCCTTAATTTAGTAACTATATAAATTGCCTAAAACTTGTATTATTT----C----CCGTTCTGTGCTGTC--------TTTTTTCT----------------------------TA----TTGCT---T---------------------------------------AGC----TCCTAA---TCGCAGTC----GATTGGG-------TTTCCTAGGCA--------------------CTATCTTCATAGCTATTCCACATTTA---TGTACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................ATTTATTT-TCCTTAATTTAGT.......................................................................................................................................................................................................................................................................2111.0010000001000
...........................................G-------------------------------------------GGATAATGGGGG---------------------------------------------------A--AT-----------TC.......................................................................................................................................................................................................................................................................................................................................18150.0710100000000
droPer2
ATTAGT---AT-------TTCTACTACGGGGGCAAAGGGATAGG-------------------------------------------GGATGATGGGGG--------------G---------------------AATCAAATGGT----A--AT-----------CAAATGGCG-----G---TATGCTTATTTAAACAATGTAAATTGATTTATTT-TCCTTAATTTAGTAACTATATAAATTGCCTAAAACTTGTATTATTT----C----CCGTTCTGTGCTGTC-------TTTTTTTCT----------------------------TA----TTGCT---T---------------------------------------AGC----TCCTAA---TCGCAGTC----GATTGGG-------TTTCCTAGGCA--------------------CTATCTTCATAGCTATTCCACATTTA---TGTACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTTAAACATTGTAAATTGATTTATTTCTCCTTAAA-CATTTCTAATATAAATTGCCTAAAATTGTAATTCCATATTTT----TTCT--------GTCTTTAATTTTTTTTTTT----------------------------TT----TTTTG---TTTC-ATATAT---------------------ATTTATG-------------------------------------------------------------------------------------------------T-ATT--TTATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
AGTTTT---AA-------------------------------------------T-CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/19/2015 at 03:16 AM