ID:

dsi_796

 Coordinate:

node_13518:663-812 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.0 -15.0 -15.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
DNAREP1_DMRCHelitron+

Sense Strand Reads

TCTATCAATATCCCAGAAAAATTATAAAATTTCTGGTTCGCGTTCACTAGGTGAGTTACGGGTATCTGATAGTCAGGGAACTATAGCATTCTCCCTTAGTTTTCATATTTTTATTAGTCTTGTAAATTCCTATCGATTTGCTAAAAACATTTTTTGCCACGCCAACTCTTACGCCCACAAACCACTCAAAACTGCCATCAACTTTTAAAATTTTTCTCATTTTATTCACCAATATCTATCGATATCCCAG
***************************************************.((((((((((...(((((((...((((((((.............))))))))......))))))).))))).))))).......****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M053
female body
 M025
embryo
 SRR902009
testis
......................TATAAAATTTCTGGTTCGCGTTCAC........................................................................................................................................................................................................... 25 0 1 7.00 7 1 0 4 2 0 0 0 0 0
...............................................................................................................TATTAGTCTTGTAAATTCCTATCGA.................................................................................................................. 25 0 1 6.00 6 3 1 1 1 0 0 0 0 0
.................................................................................................................TTAGTCTTGTAAATTCCTATCGATT................................................................................................................ 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0
.....................TTATAAAATTTCTGGTTCGCGTTCAC........................................................................................................................................................................................................... 26 0 1 3.00 3 1 0 0 0 1 0 1 0 0
...................................................TGAGTTACGGGTATCTGATAGTCAGGG............................................................................................................................................................................ 27 0 1 3.00 3 1 0 0 1 0 0 1 0 0
............................................CACTAGGTGAGTTACGGGTATCTGA..................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 1 1 0 0 0 0
.................................TGGTTCGCGTTCACTAGGTGAGTTAC............................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.................................TGGTTCGCGTTCACTAGGTGAGTTA................................................................................................................................................................................................ 25 0 1 2.00 2 1 0 0 0 1 0 0 0 0
........................................................TACGGGTATCTGATAGTCAGGGAACTA....................................................................................................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0
...................................................TGAGTTACGGGTATCTGATAGTCAGGGA........................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................TACGGGTATCTGATAGTCAGGGAAC......................................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................GTTACGGGTATCTGATAGTCAGGGA........................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................TCCTATCGATTTGCTAAAAACATTTTT................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................TTATTAGTCTTGTAAATTCCTATCGATT................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................TCTGATAGTCAGGGAACTATAGCA.................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................AACCACTCAAAACTGCCATCAACTT.............................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................TACGGGTATCTGATAGTCAGGGA........................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................TACGGGTATCTGATAGTCAGGGAACT........................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................TAGGTGAGTTACGGGTATCTGATAGTCAG.............................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TGAGTTACGGGTATCTGATAGTCA............................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................TAGGTGAGTTACGGGTATCTGATAGTCA............................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................AGGTGAGTTACGGGTATCTGATAGTCA............................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................TCGCGTTCACTAGGTGAGTTACGGG............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................TTATAAAATTTCTGGTTCGCGTT.............................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................TTCTCCCTTAGTTTTCATATTTT........................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TACGCCCACAAACCACTCAAAACT......................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................TAGTCAGGGAACTATAGCATTCTC............................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0
..............................TTCTGGTTCGCGTTCACTAGGTGAGT.................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................TAGGTGAGTTACGGGTATCTGATAGTC................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................AACTGCCATCAACTTTTAAAATTTAAA.................................. 27 3 1 1.00 1 0 0 0 0 0 1 0 0 0
........................TAAAATTTCTGGTTCGCGTTCAC........................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................................................ATAGTCAGGGAACTAT...................................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................GGGTATCTGATAGTCAGGGAACTA....................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................TTCGCGTTCACTAGGTGAGTT................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................ACGGGTATCTGATAGTCAGGGAA.......................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................TTTATTAGTCTTGTAAATTCCTATCGA.................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................CTGGTTCGCGTTCACTAGGTGAGTTA................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................TGAGTTACGGGTATCTGATAGTC................................................................................................................................................................................ 23 0 5 0.40 2 0 1 0 0 0 1 0 0 0
...................................................TGAGTTACGGGTATCTGATAGT................................................................................................................................................................................. 22 0 6 0.33 2 1 0 0 0 0 0 0 0 1
.......................................................................................................................TTGTAAATTCCTATCGATTTGC............................................................................................................. 22 0 3 0.33 1 0 0 0 1 0 0 0 0 0
...............................................................................................................TATTAGTCTTGTAAATTCCTATCGG.................................................................................................................. 25 1 4 0.25 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................TATCGATTTGCTAAAAAC...................................................................................................... 18 0 4 0.25 1 0 0 0 0 1 0 0 0 0
.....CAATATCCCAGAAAAAT.................................................................................................................................................................................................................................... 17 0 14 0.21 3 0 3 0 0 0 0 0 0 0
...................................................TGAGTTACGGGTATCTGATAGTCTGGG............................................................................................................................................................................ 27 1 7 0.14 1 0 0 1 0 0 0 0 0 0
.................................................................................TATAGCATTCTCCCTT......................................................................................................................................................... 16 0 15 0.07 1 0 1 0 0 0 0 0 0 0
.....CAATATCCCAGAAAA...................................................................................................................................................................................................................................... 15 0 19 0.05 1 0 1 0 0 0 0 0 0 0
..................................................GCGAGTTACGGGGATC........................................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................................................................TTATTAGTTTTGCAAATTCCCATCGA.................................................................................................................. 26 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................................................TTCATATTTTTATTAGTCTTGTAAATT.......................................................................................................................... 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGATAGTTATAGGGTCTTTTTAATATTTTAAAGACCAAGCGCAAGTGATCCACTCAATGCCCATAGACTATCAGTCCCTTGATATCGTAAGAGGGAATCAAAAGTATAAAAATAATCAGAACATTTAAGGATAGCTAAACGATTTTTGTAAAAAACGGTGCGGTTGAGAATGCGGGTGTTTGGTGAGTTTTGACGGTAGTTGAAAATTTTAAAAAGAGTAAAATAAGTGGTTATAGATAGCTATAGGGTC
******************************************************************************************************************.((((((((((...(((((((...((((((((.............))))))))......))))))).))))).))))).......*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 O001
Testis
 GSM343915
embryo
 M025
embryo
 M053
female body
 M024
male body
....................TAATATTTTAAAGACCAAGCGCAAGT............................................................................................................................................................................................................ 26 0 1 9.00 9 4 1 3 1 0 0 0 0 0 0 0
...................TTAATATTTTAAAGACCAAGCGCAAGT............................................................................................................................................................................................................ 27 0 1 8.00 8 3 3 1 0 0 0 0 0 1 0 0
..........................................AAGTGATCCACTCAATGCCCATAGACT..................................................................................................................................................................................... 27 0 1 7.00 7 6 0 1 0 0 0 0 0 0 0 0
..................................................................................................CAAAAGTATAAAAATAATCAGAACAT.............................................................................................................................. 26 0 1 7.00 7 0 4 0 3 0 0 0 0 0 0 0
..................TTTAATATTTTAAAGACCAAGCGCAAGT............................................................................................................................................................................................................ 28 0 1 6.00 6 2 2 1 1 0 0 0 0 0 0 0
......................................................................................................AGTATAAAAATAATCAGAACATTTAAG......................................................................................................................... 27 0 2 3.50 7 1 3 3 0 0 0 0 0 0 0 0
........................ATTTTAAAGACCAAGCGCAAGTGAT......................................................................................................................................................................................................... 25 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0
...........................TTAAAGACCAAGCGCAAGTGATCCAC..................................................................................................................................................................................................... 26 0 1 3.00 3 1 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGAGTAAAATAAGTGGTTATAGATA........... 25 0 10 2.40 24 8 7 4 4 1 0 0 0 0 0 0
.....................AATATTTTAAAGACCAAGCGCAAGTGAT......................................................................................................................................................................................................... 28 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0
...........................TTAAAGACCAAGCGCAAGTGATCCA...................................................................................................................................................................................................... 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
...........................................AGTGATCCACTCAATGCCCATAGACT..................................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGTTGAGAATGCGGGTGTTTGGT.................................................................. 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGTGAGTTTTGACGGTAGTTGAAAAT........................................... 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
..........................TTTAAAGACCAAGCGCAAGTGATCCA...................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................TTTTAATATTTTAAAGACCAAGCGCAAGT............................................................................................................................................................................................................ 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................CCCTTGATATCGTAAGAGGGAATCAA..................................................................................................................................................... 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................CAGAACATTTAAGGATAGCTAAACGAT........................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................CAAAAGTATAAAAATAATCAGAACATT............................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGCGGTTGAGAATGCGGGTGTTTGGT.................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................TGATATCGTAAGAGGGAATCAAAAGT................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................TTTTAAAGACCAAGCGCAAGTGAT......................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GAATCAAAAGTATAAAAATAATCAGAA................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.............................AAAGACCAAGCGCAAGTGATCC....................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................AAGGATAGCTAAACGATTTTTGT..................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................AAGTGATCCACTTAATGCCCATAGACT..................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAAGGATAGCTAAACGATTTTTGTAA................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATATCGTAAGAGGGAATCAAAAGT................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................ACATTTAAGGATAGCTAAACGAT........................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................CAGAACATTTAAGGATAGCTAAACGATT.......................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................ATCAAAAGTATAAAAATAATCAGAA................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................AAGAGTAAAATAAGTGGTTATAGATA........... 26 0 9 1.00 9 2 2 1 1 3 0 0 0 0 0 0
..........................................................................TCCCTTGATATCGTAAGAGGGAAT........................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................TTAAGGATAGCTAAACGATTTTTGT..................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................GATATCGTAAGAGGGAATCAAAAGT................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................AGGGAATCAAAAGTATAAAAATAATCAGA.................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................TTAAAGACCAAGCGCAAGTGATCCACT.................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGAATGCGGGTGTTTGGTGAGTTT............................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................GATCCACTCAATGCCCATAGACT..................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGTGAGTTTTGACGGTAGTTGAAAATT.......................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................TGAGAATGCGGGTGTTTGGTGAGTTT............................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGGATAGCTAAACGATTTTTGT..................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTTGTAAAAAACGGTGCGG....................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................AAGGATAGCTAAACGATTTTTGTAAA.................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTGGTGAGTTTTGACGGTAGTTGAAAATT.......................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GATTTTTGACGGTAGTTGAAAATTT......................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..........................TTTAAAGACCAAGCGTAAGTGAT......................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGCGGTTGAGAATGCGGGTGTT...................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................ATATCGTAAGAGGGAATCAA..................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................GGTTGAGAATGCGGGTGT....................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................TAAAGACCAAGCGCAAGTGATCCACT.................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................TTTTTAATATTTTAAAGACCAAGCGCAAGT............................................................................................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................GATATCGTAAGAGGGAAT........................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................AACGGTGCGGTTGAGAATGCG............................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................AAGTGGTTATAGATAGCTATAGGGT. 25 0 14 0.57 8 0 0 0 0 8 0 0 0 0 0 0
..........................................................................................................................TATTAAGGATAGCTAAACGATTT......................................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GTATAAAAATAATCAGAACATTTAAG......................................................................................................................... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAAGTGGTTATAGATAGGTATAGGGT. 26 1 15 0.47 7 0 4 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGGGAGTTTAAAATTTTAA...................................... 19 2 5 0.40 2 0 0 0 0 0 0 0 0 0 0 2
AGATAGTTATAGGGT........................................................................................................................................................................................................................................... 15 0 20 0.35 7 0 0 0 0 7 0 0 0 0 0 0
.............................................................................................................................................................................................................ATTTTAAAAAGAGTAAAAT.......................... 19 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGTGGTTATAGATAGCTATAGGGT. 24 0 15 0.27 4 0 0 0 1 3 0 0 0 0 0 0
......................................................................................................................................................................................................................AGAGTAAAATAAGTGCTTATAGATA........... 25 1 16 0.25 4 3 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAAAAGAGTAAAATAAGTGGTTATAGATA........... 29 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................GGACCAGGCGCAAGCGATC........................................................................................................................................................................................................ 19 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGTGGTTATAGATAGGTATAGGGT. 24 1 17 0.24 4 0 3 0 1 0 0 0 0 0 0 0
.....................................................TCAATGCCCATAGACT..................................................................................................................................................................................... 16 0 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTGAAAAGAGTTAAATAAGTGGTTATATAT............ 30 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
....TGTTATAGGGTCTTTTTAAT.................................................................................................................................................................................................................................. 20 1 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGTGGTTATAGATAGGTATAGGGT. 25 1 16 0.19 3 0 1 0 2 0 0 0 0 0 0 0
......TAATAGGGTCTTTTTAATATTTTT............................................................................................................................................................................................................................ 24 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGAGTAAAATAACTGGTTATAGATA........... 25 1 13 0.15 2 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAAGTGGTTATAGATAGCTATAGGGT. 26 0 13 0.15 2 0 0 0 0 2 0 0 0 0 0 0
...................................................ACTCAATGCCCATAGACT..................................................................................................................................................................................... 18 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
..........AGGGTCTTTTTAATATTTT............................................................................................................................................................................................................................. 19 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
AGATAGTTATAGGGTCTTTTTAATA................................................................................................................................................................................................................................. 25 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
....................................TAGTGCAAGTGATCGACTCAA................................................................................................................................................................................................. 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
.....GTTATAGGGTCTTTTTAA................................................................................................................................................................................................................................... 18 0 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAGAGTAAAACAAGTGGTTATAGATA........... 26 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAGAGTAAAATAAGTGGTTATAGAT............ 26 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
........................ATTTTCAGGACCAAGCG................................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAGTAAAATAAGTGGTTATAGATA........... 24 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAACGATAGCTAAACGATTTTT....................................................................................................... 22 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGAGTTAAATAAGTGGTTATATATAGCTA....... 29 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
...........................................AGTGATCGACTCAATGCCCATA......................................................................................................................................................................................... 22 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTGGTTATAGATAGCTATAGGGT. 23 0 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................ATGTGGTTATAGATAGCTATAGGGT. 25 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
AGACAGTTATAGGGTCTTTTT..................................................................................................................................................................................................................................... 21 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGTGGTTATAGATAGCTATAGGGT. 24 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
..............................AAGACCAAGCGCGAG............................................................................................................................................................................................................. 15 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
..ATAGTTATAGGGTCTTT....................................................................................................................................................................................................................................... 17 0 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGTGGTTATAGATAGCTATAGGGT. 24 1 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AGAGTTAAATAAGTGGTTATATATA........... 25 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGAATAAAATAATTGGTTATAGATAGCT........ 28 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAAGTGGTTATAGATAG.......... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAAAAGAGTAAAATA......................... 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................ACAGTAAAATAAGTGCTTATAGATA........... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................ACAGTATAAAAATAATCAGAACAT.............................................................................................................................. 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................AAAATAATCAGAACAT.............................................................................................................................. 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TAAAATAAGTGGTTATAGATA........... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................AGTTGAATAAGTGGTTATTGAT............ 22 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAAAAGAGTAAAATAAG....................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
............................TGAAGATGAAGCGCAAGTG........................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................AGAATAAAATAAGTGGTTATAGATA........... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................AAAGTATAAAAATAATCAGAACA............................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAGTAAAATAAGTGG.................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAGAGTAAAATAAGTGGT................... 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAGAATAAAATAATTGGTTATAGATA........... 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_13518:613-862 + dsi_796 TCTATCAATATCCCAGAAAAATTATAAAATTT-----------------------------------------------CTGGTTCG--CGTTCACTAGGTGAGTTACGGGTATCTGATAGTCAGGGA-----ACTATAGCAT-TCTCCCTTAGTTTT--------C--------------ATATTTT----------------------------------TATTA------------GTCT--TGTAAATTCCTATCGATTTGCTAAAAACATTTTTTGCCACGCCAACTCTTACGCCCACAAACCACTCAAAACTGCCAT---C-AACTTTTAA-AA----------------------------------------------------------------------------------------TTTTTCTCATTTTATTC---------------ACCAATATCTATCGATATCCCAG-
droSec2 scaffold_102:138781-139039 + TCTATCAATATCCCAGAAAAATTATAAAATTT-----------------------------------------------CTGGTTCG--CGTTCACTAGGTGAGTTACGGGTATCTGATAGTCAGGGA-----ACTATAGCAT-TCTCCCTTACTTTT--------C--------------ATATTTT----------------------------------TATTA------------GTCT--TGTAAATTCCTATCGATTTGCTAAAAACATTTTTTGCCACGCCAACTCTTACCCCCACAAACCACACAAAACTGCCAT---C-AACTTTTAA-AATTTTTAA-------------------------------------------------------------------------------AATTTTTCTCATTTTATTC---------------ACCAATATCTATCGATATCCCAG-
dm3 chr3LHet:1756606-1756847 + TCTATCGATATCCCAAAAAAATTATGAAATTT-----------------------------------------------CGCCATCGCATTCCCACTAGCTGAGTAACGGGT-------AGTCGGGGAACTCAACTATAGCAT-TCTCCCTTGTTTTT--------T--------------ATATTAT----------------------------------TATTG------------GTCT--TGTAAATTTCTATCGATTTGCCAAACAA----------AAGTCTACTCTAACGAACAGGAACCGCACAAAACTGTCA------CACTTTTGA-AGAGTGTGT---------------------------------------------------------------------------TCATATTTTTTCACATTTTTATT---------------AC-----TCTAACG----CCCTA-
droEre2 scaffold_3316:166-437 + TCTACCGATATTCAATATAATTT-TGAAAATT-----------------------------------------------TTCTTTTGCACTTTCACTAGCTGAGTAACGGGTATCTGATAATCGGGGAACTTGACTGTAGCAT-TCAATCTTGTTTCC------------------------CTTTTT----------------------------------AATAT------------ATCT--TGTAAATATCTTTAGATTTGTCAAAA-CACTTTTTGCCACGCCTACTGCAACGCTCATAAACCGCCCAAAACTGTCACGCCCACACTTTTGAGAAAATGTAA-------------------------------------------------------------------------------TATTTTTA---T-------TTTTGAATATATTTTGTAAATTTCTATAGGTTTTCCAA-
droYak3 v2_chr2L_random_010:315573-315835 + C-TGTCAGTGT-------------TGAAGACT-----------------------------------------------CTCCTTCGCACATCCACTAGCTGAGTAACGGGTATCAAATAGTCGGGGAACTCGACTATAGCGT-TCTCTCTTGTTTCA------------------------TTTTTG----------------------------------TATAA------------GTCT--TGTAAATTTCTATCGATTTGCCAAAAAA-CTTTTTGCTACGCCCACTCTAACGCCCACAAACCGCCCAAAGCTGCCACGCCCACACTTTTAA-AAAATGTTT---------------------------------------------------------------------------TGATATTTTTTC--AT-------TTTTGTATTAGTCTTGTAAATTTCTATCGATTTGCAAA-
droEug1 scf7180000409260:10969-11178 - TGA-TCT---------------------------------------------------------------------------------------------------------------------------------GCCGAA--CCCTCCTCAGTCTT--------C--------------TCCTCTC----------------------------------TCTTACCATGGAAGCCAA----------------CTCCGTCGACTAAAGGTAGTTTCCTCTGCGCTGCAGCCC-----------------------ATTGCGCTGATGCATGCGAGAA-GAATGCTGCCTTTGGGGTTGAGGGTTCTGTATCCCCACCAAGTATGTTTAGCATTGAAGTCTCCACCAATTATGAATCTAGGACC---------------------------------------------CAGGTTTGTCAG-
droBia1 scf7180000302064:13043-13276 + A---------TCCCATAAAGTATATATATATT-----------------------------------------------CTTGATCA--GGATCACCAGCCGAGTC-----------------------------------GATCTAGCCATGTCCGC-CTGTCCTTTCGTCCTTGCTAGCATATTTA----------------------------------AACTT----GGCAAGCAGATTCCTTGGCATACCTATCGACGGACCAAAAAA-A-GTGTGCCACGCCAACTCTAACGCCCACTAACCGCCCAAAACTACGGTTGCCAAA--------------------------------------------------------------------------------------------------GTTTTC--AT-------GCT-AGAAATGTCTTATCAATACCTATTGAT--------
droTak1 scf7180000410442:6858-7127 + CCTATCAAAATGTAAAAGAAATTTTTTAAATCGGACCATTCGTTAAAAAGTTACGGCGGTTCAAAGTTTTTATCTCCATCTCCATCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGT-TCTTTCTTGTTTTT------------------------TTATGCTATCAGCCACTAAACTAGCCATTTTTAAATTCTTTATAG------------CTAT--TTTAGCTATTTAA-----------------------------------------CTACAAGACAAGCAATTCTGTACT---T-ATTTTTTGG-TA---------------------------------------------------------------------------------------T-----------------------------------------TATTGCTTTTTTAT-
droRho1 scf7180000761122:852-1053 + T----------------------------------------------------------------------------------------------------GAGTAACGGGTATCTGATAGTCAGGGCACCCGACTATAGCGT-TCTCTCTTGTTTTAATTA----TTTATTCTTATTATCCTC--TC----------------------------------AACTT----AAAACTAAGCCTCGTGAAAATCTCCAATGATCTGCTATAAAA-CA-TAT------------------------------------------------------------AATACTA---------------TGGTCTTCTATCCGCTC----------------------TTATACTAGTTACTAGCTTGATGCA-------------------------------------CTTCTTTTTCGTTTCTATAT-
droAna3 scaffold_3511:452-542 - TCCTTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACCATGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTTGTCACC---------------------------------------------CAAGTCGCCCAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCTATCAATATCCCAGAAAAATTATAAAATTT-----------------------------------------------CTGGTTCG--CGTTCACTAGGTGAGTTACGGGTATCTGATAGTCAGGGA-----ACTATAGCAT-TCTCCCTTAGTTTT--------C--------------ATATTTT----------------------------------TATTA------------GTCT--TGTAAATTCCTATCGATTTGCTAAAAACATTTTTTGCCACGCCAACTCTTACGCCCACAAACCACTCAAAACTGCCAT---C-AACTTTTAA-AA----------------------------------------------------------------------------------------TTTTTCTCATTTTATTC---------------ACCAATATCTATCGATATCCCAG-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................TATAAAATTT-----------------------------------------------CTGGTTCG--CGTTCAC....................................................................................................................................................................................................................................................................................................................................................................................................2517.00700000042100000000
..............................................................................................................................................................................................................................TATTA------------GTCT--TGTAAATTCCTATCGA...............................................................................................................................................................................................................................2516.00600000011301000000
................................................................................................................................................................................................................................TTA------------GTCT--TGTAAATTCCTATCGATT.............................................................................................................................................................................................................................2513.00300000010200000000
.....................TTATAAAATTT-----------------------------------------------CTGGTTCG--CGTTCAC....................................................................................................................................................................................................................................................................................................................................................................................................2613.00300010000110000000
....................................................................................................TGAGTTACGGGTATCTGATAGTCAGGG.....................................................................................................................................................................................................................................................................................................................................................................2713.00300010001100000000
.............................................................................................CACTAGGTGAGTTACGGGTATCTGA..............................................................................................................................................................................................................................................................................................................................................................................2512.00200000001010000000
................................................................................TGGTTCG--CGTTCACTAGGTGAGTTAC........................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000002000000
................................................................................TGGTTCG--CGTTCACTAGGTGAGTTA.........................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000110000000
.........................................................................................................TACGGGTATCTGATAGTCAGGGA-----ACTA...........................................................................................................................................................................................................................................................................................................................................................2712.00200000010100000000
....................................................................................................TGAGTTACGGGTATCTGATAGTCAGGGA-----...............................................................................................................................................................................................................................................................................................................................................................2812.00200000000200000000
.........................................................................................................TACGGGTATCTGATAGTCAGGGA-----AC.............................................................................................................................................................................................................................................................................................................................................................2512.00200000000002000000
.......................................................................................................GTTACGGGTATCTGATAGTCAGGGA-----...............................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
............................................................................................................................................................................................................................................................TCCTATCGATTTGCTAAAAACATTTTT.............................................................................................................................................................................................................2711.00100000000001000000
...........................................................................................................................................................................................T----------------------------------TATTA------------GTCT--TGTAAATTCCTATCGATT.............................................................................................................................................................................................................................2811.00100000000100000000
.................................................................................................................TCTGATAGTCAGGGA-----ACTATAGCA......................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
................................................................................................................................................................................................................................................................................................................AACCACTCAAAACTGCCAT---C-AACTT.......................................................................................................................................................2511.00100000010000000000
.........................................................................................................TACGGGTATCTGATAGTCAGGGA-----...............................................................................................................................................................................................................................................................................................................................................................2311.00100000000100000000
.........................................................................................................TACGGGTATCTGATAGTCAGGGA-----ACT............................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
................................................................................................TAGGTGAGTTACGGGTATCTGATAGTCAG.......................................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
....................................................................................................TGAGTTACGGGTATCTGATAGTCA........................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
................................................................................................TAGGTGAGTTACGGGTATCTGATAGTCA........................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.................................................................................................AGGTGAGTTACGGGTATCTGATAGTCA........................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
....................................................................................TCG--CGTTCACTAGGTGAGTTACGGG.....................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
.....................TTATAAAATTT-----------------------------------------------CTGGTTCG--CGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
..............................................................................................................................................T-TCTCCCTTAGTTTT--------C--------------ATATTTT----------------------------------......................................................................................................................................................................................................................................................................2311.00100000000100000000
......................................................................................................................................................................................................................................................................................................TACGCCCACAAACCACTCAAAACT......................................................................................................................................................................2411.00100000000100000000
......................................................................................................................TAGTCAGGGA-----ACTATAGCAT-TCTC................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..............................TT-----------------------------------------------CTGGTTCG--CGTTCACTAGGTGAGT...........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
................................................................................................TAGGTGAGTTACGGGTATCTGATAGTC.........................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................AACTGCCAT---C-AACTTTTAA-AA----------------------------------------------------------------------------------------TTTAAA..................................................2711.00100000000000010000
........................TAAAATTT-----------------------------------------------CTGGTTCG--CGTTCAC....................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.....................................................................................................................ATAGTCAGGGA-----ACTAT..........................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
............................................................................................................GGGTATCTGATAGTCAGGGA-----ACTA...........................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...................................................................................TTCG--CGTTCACTAGGTGAGTT..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..........................................................................................................ACGGGTATCTGATAGTCAGGGA-----A..............................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
..........................................................................................................................................................................................TT----------------------------------TATTA------------GTCT--TGTAAATTCCTATCGA...............................................................................................................................................................................................................................2711.00100000001000000000
...............................................................................CTGGTTCG--CGTTCACTAGGTGAGTTA.........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
....................................................................................................TGAGTTACGGGTATCTGATAGTC.........................................................................................................................................................................................................................................................................................................................................................................2350.40200000000001010000
....................................................................................................TGAGTTACGGGTATCTGATAGT..........................................................................................................................................................................................................................................................................................................................................................................2260.33200000000100001000
..................................................................................................................................................................................................................................................T--TGTAAATTCCTATCGATTTGC..........................................................................................................................................................................................................................2230.33100000001000000000
..............................................................................................................................................................................................................................TATTA------------GTCT--TGTAAATTCCTATCGG...............................................................................................................................................................................................................................2540.25100000010000000000
...............................................................................................................................................................................................................................................................TATCGATTTGCTAAAAAC...................................................................................................................................................................................................................1840.25100000000010000000
.....CAATATCCCAGAAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................17140.21300000000003000000
.......................................................................................................................................TATAGCAT-TCTCCCTT............................................................................................................................................................................................................................................................................................................................................16150.07100000000001000000
.....CAATATCCCAGAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15190.05100000000001000000
............................................................................................................................................................TT--------C--------------ATATTTT----------------------------------TATTA------------GTCT--TGTAAATT.......................................................................................................................................................................................................................................27200.05100000010000000000
droSec2
TCTATCAATATCCCAGAAAAATTATAAAATTT-----------------------------------------------CTGGTTCG--CGTTCACTAGGTGAGTTACGGGTATCTGATAGTCAGGGA-----ACTATAGCAT-TCTCCCTTACTTTT--------C--------------ATATTTT----------------------------------TATTA------------GTCT--TGTAAATTCCTATCGATTTGCTAAAAACATTTTTTGCCACGCCAACTCTTACCCCCACAAACCACACAAAACTGCCAT---C-AACTTTTAA-AATTTTTAA-------------------------------------------------------------------------------AATTTTTCTCATTTTATTC---------------ACCAATATCTATCGATATCCCAG-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................TCCTATCGATTTGCTAAAAACATT................................................................................................................................................................................................................2411.0011000
dm3
TCTATCGATATCCCAAAAAAATTATGAAATTT-----------------------------------------------CGCCATCGCATTCCCACTAGCTGAGTAACGGGT-------AGTCGGGGAACTCAACTATAGCAT-TCTCCCTTGTTTTT--------T--------------ATATTAT----------------------------------TATTG------------GTCT--TGTAAATTTCTATCGATTTGCCAAACAA----------AAGTCTACTCTAACGAACAGGAACCGCACAAAACTGTCA------CACTTTTGA-AGAGTGTGT---------------------------------------------------------------------------TCATATTTTTTCACATTTTTATT---------------AC-----TCTAACG----CCCTA-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................TGAGTAACGGGT-------AGTCGGGGAAC..................................................................................................................................................................................................................................................................................................................................................................23138.00380000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001100000000000000000000000000000000000000000000000102000020000100000000000000110600140000000000000000000000000000000000000000000000000000000000000000000002000000142000000000000002111000000
............................................................................................................................................................................................................................................................TTCTATCGATTTGCCAAACAA----------AAGTC....................................................................................................................................................................................................26119.00190000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000002000000000000010200150000000000000000000000000000000000000000000000000000000000000000001300000000200000000000000000000000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGGAACT.................................................................................................................................................................................................................................................................................................................................................................24111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000200100201000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000010000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGGA....................................................................................................................................................................................................................................................................................................................................................................21111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000110000000000000000000000000000000000000000000000000000000000000000000100000000120000000000000000110000000
....................................................................................................TGAGTAACGGGT-------AGTCGG.......................................................................................................................................................................................................................................................................................................................................................................18210.00200000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100110000000000000000000000000000000000000000000000000000000000000000000100800100000000000000000000000000000000000000000000000000000000000000000000000300000000100000000000000000010000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGG.....................................................................................................................................................................................................................................................................................................................................................................2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100101010000000000000000000000000000000000000000000000000000000000002000000100000000010000000000000000100000000
...................................................................................................................................................................................................................................................................................................TCTAACGAACAGGAACCGCACAAAAC.......................................................................................................................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGGAA...................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010103010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGGAACTA................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TAGCTGAGTAACGGGT-------AGTCGG.......................................................................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGGAACTC................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AACTGTCA------CACTTTTGA-AGAGTGTGT---------------------------------------------------------------------------..............................................................2615.0050000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTCTATCGATTTGCCAAACAA----------AAGTCT...................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGGAACTCA...............................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
....................................................................................................TGAGTAACGGGT-------AGTCGGG......................................................................................................................................................................................................................................................................................................................................................................1924.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001310000000100000000000000000010000000
......................................................................................................................................................................................................................................................................TTGCCAAACAA----------AAGTCTACTCTAA............................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TAGCTGAGTAACGGGT-------AGTCGGGG.....................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................TAGCTGAGTAACGGGT-------AGTCGGG......................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGGAACTCAAC.............................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TAACGAACAGGAACCGCACAAAACTGT....................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACATTTTTATT---------------AC-----TCTAACG----CCC...2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TTCCCACTAGCTGAGTAACGG......................................................................................................................................................................................................................................................................................................................................................................................21182.724900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000300000000000000000000010000300000000000000000002010000000000000001000000360000000000000000000000000000
.........................................................................................................................................................................................................................................................AATTTCTATCGATTTGCCAAACAA----------A........................................................................................................................................................................................................2522.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TCA------CACTTTTGA-AGAGTGTGT---------------------------------------------------------------------------TC............................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TCGATTTGCCAAACAA----------AAGTC....................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
....................................................................................................TGAGTAACGGGT-------AGTCGGGGAT...................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TGCCAAACAA----------AAGTCTACTCTAACGAA........................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AAACTGTCA------CACTTTTGA-AGAGTG............................................................................................................................................2412.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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TCTACCGATATTCAATATAATTT-TGAAAATT-----------------------------------------------TTCTTTTGCACTTTCACTAGCTGAGTAACGGGTATCTGATAATCGGGGAACTTGACTGTAGCAT-TCAATCTTGTTTCC------------------------CTTTTT----------------------------------AATAT------------ATCT--TGTAAATATCTTTAGATTTGTCAAAA-CACTTTTTGCCACGCCTACTGCAACGCTCATAAACCGCCCAAAACTGTCACGCCCACACTTTTGAGAAAATGTAA-------------------------------------------------------------------------------TATTTTTA---T-------TTTTGAATATATTTTGTAAATTTCTATAGGTTTTCCAA-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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............................................................................................TCACTAGCTGAGTAACGGGT....................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
droYak3
C-TGTCAGTGT-------------TGAAGACT-----------------------------------------------CTCCTTCGCACATCCACTAGCTGAGTAACGGGTATCAAATAGTCGGGGAACTCGACTATAGCGT-TCTCTCTTGTTTCA------------------------TTTTTG----------------------------------TATAA------------GTCT--TGTAAATTTCTATCGATTTGCCAAAAAA-CTTTTTGCTACGCCCACTCTAACGCCCACAAACCGCCCAAAGCTGCCACGCCCACACTTTTAA-AAAATGTTT---------------------------------------------------------------------------TGATATTTTTTC--AT-------TTTTGTATTAGTCTTGTAAATTTCTATCGATTTGCAAA-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................TCTAACGCCCACAAACCGCCCAAAGCT......................................................................................................................................................................27201.0020020000000000
...................................................................................................................................................................................................................................................................................................TCTAACGCCCACAAACCGCCCAAAGCTGC....................................................................................................................................................................29200.8517001700000000
.....................................................................................................................................................................................................................................................................................................TAACGCCCACAAACCGCCCAAAGCT......................................................................................................................................................................25200.10202000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTATTAGTCTTGTAAATT.................21200.10200000020000
.............................................................................................CACTAGCTGAGTAACGGGTATCAA...............................................................................................................................................................................................................................................................................................................................................................................24200.10202000000000
...............................................................................................................................................................................................................................................GTCT--TGTAAATTTCTATCGATTTGCC.........................................................................................................................................................................................................................26200.10200200000000
............................................................................................................................................................................................................................................................................................CGCCCACTCTAACGCCCACAA...................................................................................................................................................................................21200.10202000000000
......................................................................................................................................................................................................................................................................TTGCCAAAAAA-CTTTTTGCTACGCC....................................................................................................................................................................................................25120.08100100000000
.................................................................................................................................................................................................................................................................TCGATTTGCCAAAAAA-CTTTTTGCT.........................................................................................................................................................................................................25160.06100100000000
...........................................................................................................................................................................................................................................................................AAAAAA-CTTTTTGCTACGCCC...................................................................................................................................................................................................21200.05101000000000
...........................................................................................TCCACTAGCTGAGTAACGGGTATCA................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTC--AT-------TTTTGTATTAGT...........................19200.05101000000000
.................................................................................................................................CTCGACTATAGCGT-TCTCTCTTGTTTCA------------------------..............................................................................................................................................................................................................................................................................................................28200.05100000010000
......................................................................................GCACATCCACTAGCTGAGTAACGGG.....................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000
...GTCAGTGT-------------TGAAGACT-----------------------------------------------CTCCTTC..............................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
............................................................................................................................................................................................................................................................................................................................................TTTAA-AAAATGTTT---------------------------------------------------------------------------TGATATTTTTTC--AT-------.......................................28200.05100100000000
.......................................................................................................................................................................................TTTTG----------------------------------TATAA------------GTCT--TGTAAATTTC.....................................................................................................................................................................................................................................24200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCTTGTAAATTTCTATCGATTTGCA...28200.05101000000000
...................................................................................TTCGCACATCCACTAGCTGAG............................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTAGTCTTGTAAATTTCTATCGAT........28200.05101000000000
droEug1
TGA-TCT---------------------------------------------------------------------------------------------------------------------------------GCCGAA--CCCTCCTCAGTCTT--------C--------------TCCTCTC----------------------------------TCTTACCATGGAAGCCAA----------------CTCCGTCGACTAAAGGTAGTTTCCTCTGCGCTGCAGCCC-----------------------ATTGCGCTGATGCATGCGAGAA-GAATGCTGCCTTTGGGGTTGAGGGTTCTGTATCCCCACCAAGTATGTTTAGCATTGAAGTCTCCACCAATTATGAATCTAGGACC---------------------------------------------CAGGTTTGTCAG-SizeHit CountTotal NormTotal
No Reads
droBia1
A---------TCCCATAAAGTATATATATATT-----------------------------------------------CTTGATCA--GGATCACCAGCCGAGTC-----------------------------------GATCTAGCCATGTCCGC-CTGTCCTTTCGTCCTTGCTAGCATATTTA----------------------------------AACTT----GGCAAGCAGATTCCTTGGCATACCTATCGACGGACCAAAAAA-A-GTGTGCCACGCCAACTCTAACGCCCACTAACCGCCCAAAACTACGGTTGCCAAA--------------------------------------------------------------------------------------------------GTTTTC--AT-------GCT-AGAAATGTCTTATCAATACCTATTGAT--------SizeHit CountTotal NormTotal
No Reads
droTak1
CCTATCAAAATGTAAAAGAAATTTTTTAAATCGGACCATTCGTTAAAAAGTTACGGCGGTTCAAAGTTTTTATCTCCATCTCCATCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGT-TCTTTCTTGTTTTT------------------------TTATGCTATCAGCCACTAAACTAGCCATTTTTAAATTCTTTATAG------------CTAT--TTTAGCTATTTAA-----------------------------------------CTACAAGACAAGCAATTCTGTACT---T-ATTTTTTGG-TA---------------------------------------------------------------------------------------T-----------------------------------------TATTGCTTTTTTAT-SizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------------------------------------------------------------------------------------GAGTAACGGGTATCTGATAGTCAGGGCACCCGACTATAGCGT-TCTCTCTTGTTTTAATTA----TTTATTCTTATTATCCTC--TC----------------------------------AACTT----AAAACTAAGCCTCGTGAAAATCTCCAATGATCTGCTATAAAA-CA-TAT------------------------------------------------------------AATACTA---------------TGGTCTTCTATCCGCTC----------------------TTATACTAGTTACTAGCTTGATGCA-------------------------------------CTTCTTTTTCGTTTCTATAT-SizeHit CountTotal NormTotal
No Reads
droAna3
TCCTTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACCATGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTTGTCACC---------------------------------------------CAAGTCGCCCAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...TTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................25205.8511724920010
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGTCACC---------------------------------------------CAAGTCGCCCAGA24201.503013170000
...TTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCC...............................................................................................................................................................................................................................................................................................................................................................................................24200.95194150000
....TTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................24200.75153120000
......................................................................................................CACCATGGGTGTTTGGCGTTGAGG......................................................................................................................................................................................................................................................................................................................................................................24160.508422000
...TTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCC.............................................................................................................................................................................................................................................................................................................................................................................................26200.459720000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGTCACC---------------------------------------------CAAGTCGCCCAG.23200.459711000
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----GC.............................................................................................................................................................................................................................................................................................................................................................23160.447510010
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC............................................................................27160.386600000
.....TGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACC..........................................................................................................................................................................................................................................................................................................................................................................................27200.357070000
.....................................................................................TACTCACCCTTGAGCCCCACCATGG......................................................................................................................................................................................................................................................................................................................................................................................25200.357700000
......................................................................................................CACCATGGGTGTTTGGCGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................23160.315410000
......................................................................................................CACCATGGGTGTTTGGCGTTGAGGTC-----...............................................................................................................................................................................................................................................................................................................................................................26160.315500000
.....TGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................23200.306060000
.....................................................................................TACTCACCCTTGAGCCCCACCATGGG.....................................................................................................................................................................................................................................................................................................................................................................................26200.306510000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGTCACC---------------------------------------------CAAGTCGCCCAGA26200.255410000
..........................................................................................................ATGGGTGTTTGGCGTTGAGGTC-----G..............................................................................................................................................................................................................................................................................................................................................................23160.254400000
......................................................................................................CACCATGGGTGTTTGGCGTTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................25160.254400000
.................................................................................................................TTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAA.......................................................................2690.222020000
.................................................................................................................TTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAAT......................................................................2790.222020000
.................................................................................................................TTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGA........................................................................2590.222200000
..................................................................................................................TTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGA........................................................................24150.203210000
..............................................................................................................................TC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTTGTCACC---------------------------------------------.............26150.203030000
.....................................................................................TACTCACCCTTGAGCCCCACCATGGGTG...................................................................................................................................................................................................................................................................................................................................................................................28200.204400000
...............................................................................................................................C-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTTGTCACC---------------------------------------------.............25150.203030000
.....................................................................................................CCACCATGGGTGTTTGGCGTTGAGGTC-----...............................................................................................................................................................................................................................................................................................................................................................27160.193300000
..........................................................................................................ATGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G..............................................................................26160.193210000
.........................................................................................................CATGGGTGTTTGGCGTTGAGGTC-----G..............................................................................................................................................................................................................................................................................................................................................................24160.193300000
.........................................................................................................CATGGGTGTTTGGCGTTGAGGTC-----...............................................................................................................................................................................................................................................................................................................................................................23160.193021000
..............................................................................................TTGAGCCCCACCATGGGTGTTTGGCG............................................................................................................................................................................................................................................................................................................................................................................26160.193300000
.........GT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACCATG.......................................................................................................................................................................................................................................................................................................................................................................................26200.153300000
.....TGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCC...............................................................................................................................................................................................................................................................................................................................................................................................22200.153030000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGTCACC---------------------------------------------CAAGTCGCCC...21200.153030000
..................................................................................................................TTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAA.......................................................................25150.132020000
..........................................................................................................ATGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................25160.132020000
.........................................................................................................CATGGGTGTTTGGCGTTGAGGTC-----GC.............................................................................................................................................................................................................................................................................................................................................................25160.132200000
.........................................................................................................CATGGGTGTTTGGCGTTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................22160.132020000
......................................................................................................CACCATGGGTGTTTGGCGTTGAGGTC-----GC.............................................................................................................................................................................................................................................................................................................................................................28160.132200000
.....................................................................................................CCACCATGGGTGTTTGGCGTTGAGG......................................................................................................................................................................................................................................................................................................................................................................25160.132200000
.................................................................................................................TTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGA..........................................................................2390.111010000
.....................................................................................TACTCACCCTTGAGCCCCACCATG.......................................................................................................................................................................................................................................................................................................................................................................................24200.102200000
..........T--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACCATG.......................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
...TTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCA............................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
....TTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCC.............................................................................................................................................................................................................................................................................................................................................................................................25200.102020000
..........T--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACCATGG......................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
.....................................................................................................................GCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGA..........................................................................19150.071000001
........................................................................................................................TTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTTGC..............................................................28150.071010000
..................................................................................................................TTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAA....................................................................28150.071100000
.....................................................................................................................................GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTTGTCACC---------------------------------------------CAAG.........28150.071100000
...............................................................................................................................C-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTT................................................................19150.071100000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAATAAATTTGTCACC---------------------------------------------CAAGT........25150.071010000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATAAATTTGTCACC---------------------------------------------CAAGTCGCCC...28150.071010000
..............................................................................................................................TC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTTGTCACC---------------------------------------------CA...........28150.071100000
..................................................................................................................TTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAG.........................................................................23150.071100000
.............................................................................................................................GTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGAATAAATTTGTCA............................................................25150.071010000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATAAATTTGTCACC---------------------------------------------CAAGTCGC.....26150.071010000
.......................................................................................................ACCATGGGTGTTTGGCGTTGA........................................................................................................................................................................................................................................................................................................................................................................21160.061001000
......................................................................................................CACCATGGGTGTTTGGCGTTG.........................................................................................................................................................................................................................................................................................................................................................................21160.061100000
......................................................................................................CACCATGGGTGTTTGGCGTTGAGGTC-----G..............................................................................................................................................................................................................................................................................................................................................................27160.061100000
........................................................................................................CCATGGGTGTTTGGCGTTGAGG......................................................................................................................................................................................................................................................................................................................................................................22160.061100000
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.............................................................................26160.061100000
..............................................................................................TTGAGCCCCACCATGGGTGTTTGGCGT...........................................................................................................................................................................................................................................................................................................................................................................27160.061100000
......................................................................................................CACCATGGGTGTTTGGCGTTGAGC......................................................................................................................................................................................................................................................................................................................................................................24160.061100000
...........................................................................................CCCTTGAGCCCCACCATGGGTGTTTGG..............................................................................................................................................................................................................................................................................................................................................................................27160.061100000
..........................................................................................................ATGGGTGTTTGGCGTTGAGGTC-----...............................................................................................................................................................................................................................................................................................................................................................22160.061010000
...........................................................................................................TGGGTGTTTGGCGTTGAGG......................................................................................................................................................................................................................................................................................................................................................................19160.061001000
................................................................................................GAGCCCCACCATGGGTGTTTGGC.............................................................................................................................................................................................................................................................................................................................................................................23160.061010000
.........................................................................................................CATGGGTGTTTGGCGTTGAGGTC-----GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................26160.061000001
.......................................................................................................ACCATGGGTGTTTGGCGTTGAGGTC-----GC.............................................................................................................................................................................................................................................................................................................................................................27160.061100000
..............................................................................................TTGAGCCCCACCATGGGTGTTTGG..............................................................................................................................................................................................................................................................................................................................................................................24160.061100000
....................................................................................................CCCACCATGGGTGTTTGGCGTTG.........................................................................................................................................................................................................................................................................................................................................................................23160.061100000
.........................................................................................................CATGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................26160.061100000
..........................................................................................................ATGGGTGTTTGGCGTTGAGGTC-----GC.............................................................................................................................................................................................................................................................................................................................................................24160.061100000
......................................................................................................CACCATGGGTGTTTGGCGTTGA........................................................................................................................................................................................................................................................................................................................................................................22160.061100000
.....................................................................................TACTCACCCTTGAGCCCCACCATGGGTGT..................................................................................................................................................................................................................................................................................................................................................................................29160.061100000
..........................................................................................................ATGGGTGTTTGGCGTTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................21160.061010000
.................................................................................................................TTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG.............................................................................20160.061100000
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G..............................................................................25160.061100000
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----GTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................24160.061100000
............................................................................................CCTTGAGCCCCACCATGGGTGTTTG...............................................................................................................................................................................................................................................................................................................................................................................25160.061100000
.......................................................................................................ACCATGGGTGTTTGGCGC...........................................................................................................................................................................................................................................................................................................................................................................18160.061010000
.........................................................................................................CATGGGTGTTTGGCGTTGAGG......................................................................................................................................................................................................................................................................................................................................................................21160.061100000
....................................................................................................CCCACCATGGGTGTTTGGCGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................25160.061100000
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................24160.061100000
.......................................................................................................ACCATGGGTGTTTGGCGTTGAGG......................................................................................................................................................................................................................................................................................................................................................................23160.061100000
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................24160.061100000
.......................................................................................................ACCATGGGTGTTTGGCGTTG.........................................................................................................................................................................................................................................................................................................................................................................20160.061100000
............................................................................................................GGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G..............................................................................24160.061100000
..........................................................................................................ATGGGTGTTTGGCGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................19160.061010000
......................................................................................................CACCATGGGTGTTTGGCGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................23160.061010000
............................................................................................................GGGTGTTTGGCGTTGAGGTC-----G..............................................................................................................................................................................................................................................................................................................................................................21160.061100000
....................................................................................................CCCACCATGGGTGTTTGGCGTTGA........................................................................................................................................................................................................................................................................................................................................................................24160.061100000
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----G..............................................................................................................................................................................................................................................................................................................................................................22160.061100000
..........................................................................................ACCCTTGAGCCCCACCATGGGTGTTTG...............................................................................................................................................................................................................................................................................................................................................................................27160.061100000
.........................................................................................................CATGGGTGTTTGGCGTTGAGGTC-----GT.............................................................................................................................................................................................................................................................................................................................................................25160.061010000
.........................................................................................................CATGGGTGTTTGGCGTTGAGGTT-----...............................................................................................................................................................................................................................................................................................................................................................23160.061010000
......................................................................................................CACCATGGGTGTTTGGCGTTGAGGTC-----GA.............................................................................................................................................................................................................................................................................................................................................................28160.061010000
.........................................................................................................CATGGGTGTTTGGCGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................20160.061001000
....................................................................................................CCCACCATGGGTGTTTGGCGTTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................27160.061100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGTCACC---------------------------------------------CAAGTCGCCCA..22200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGTCACC---------------------------------------------CAAGTCGCCC...23200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGTCACC---------------------------------------------CAAGTCGC.....19200.051010000
....TTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCA............................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGTCACC---------------------------------------------CAAGTCGCCCA..24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGAATAAATTTGTCACC---------------------------------------------CAAGTCGCC....26200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGTCACC---------------------------------------------CAAGTCGCCCAGA25200.051100000
TCCTTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCC...............................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGTCACC---------------------------------------------CAAGTCGCCC...22200.051010000
......................................................................................ACTCACCCTTGAGCCCCACCATGG......................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGTCACC---------------------------------------------CAAGTCGCCCAG.24200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGTCACC---------------------------------------------CAAGTCGCC....21200.051010000
.....TGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACG..........................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
....TTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCC...............................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...TTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGC................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
..CTTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCC.............................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
....TTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACC..........................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
..CTTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGC................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGTCACC---------------------------------------------CAAGTCGCC....22200.051010000
...........................................................................................................TGGGTGTTTGGCGTTGAGGTC-----GCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T..............................................................................25200.051010000
......GGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCACT..........................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.CCTTTGGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGTCACC---------------------------------------------CAAGTCGCCCAG.25200.051010000
......GGGGT--------------------------------------------------------------------------TACTCACCCTTGAGCCCCAC...........................................................................................................................................................................................................................................................................................................................................................................................25200.051010000

Generated: 05/19/2015 at 02:39 AM