ID:

dsi_7936

 Coordinate:

3l:16252180-16252273 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.2 -16.9 -16.7 -16.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCTGCTATGATCGCTCAAATGAGTTTCCCCTGCTGGATAGTGCGAAATAGTAAGTATCTAATTGGATCTGATTGGATTGATCAGCTTTATCTATATCCTGTTAGAAGAAGCCCATACTAAAGCTTGCAATCTTTTTACTTCAGCTTCCTGGACAACTTTGTGCGCATCAGCGATGCCGAGTACATTCCCAGCA
**************************************************........((.....((..(((..((((((....(((((.((((........)))).)))))...............))))))..)))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
..............................................................................................TATCCTGTTAGAAGAAGCCCATACTAAA........................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................CTTCCTGGACAACTTTGTGCGCATCAGC...................... 28 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................TACTTCCTGGACAACTTTGTGCGCAT.......................... 26 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................ACGTCCTGGACAACTTTGT................................ 19 2 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................................CTGGATAACTTTGTGC.............................. 16 1 9 0.78 7 0 5 0 0 1 0 1
.............................................................................................ATATCCTGTTTGAAGA..................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0
......................AGTTACCCCTGCTGGA............................................................................................................................................................ 16 1 3 0.33 1 0 0 1 0 0 0 0
.................................................................GATCTTACTGGATTGATC............................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0
.........................................................................................................................................ACTTCAGCTTTCTGGA......................................... 16 1 6 0.17 1 0 0 0 0 1 0 0
.........................................................................TGGATTGGTCAGCTATATTT..................................................................................................... 20 3 15 0.13 2 0 0 0 0 0 2 0
.........................................................................TGGATTGGTCAGCTTTTT....................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 1 0
...................................................................TCTGATCGGATTGAGCA.............................................................................................................. 17 2 19 0.05 1 0 0 0 0 1 0 0
....................................................................CTTATTGGATTGAACAG............................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................TACTGGATAACTTTGTG............................... 17 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

CGGACGATACTAGCGAGTTTACTCAAAGGGGACGACCTATCACGCTTTATCATTCATAGATTAACCTAGACTAACCTAACTAGTCGAAATAGATATAGGACAATCTTCTTCGGGTATGATTTCGAACGTTAGAAAAATGAAGTCGAAGGACCTGTTGAAACACGCGTAGTCGCTACGGCTCATGTAAGGGTCGT
**************************************************........((.....((..(((..((((((....(((((.((((........)))).)))))...............))))))..)))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
CGGACGAAACTTGCGAGATTA............................................................................................................................................................................. 21 3 3 0.33 1 0 1 0
......ATACTTGCGAGTTTCCTC.......................................................................................................................................................................... 18 2 3 0.33 1 1 0 0
......ATACTTGCGAGTCTCCTC.......................................................................................................................................................................... 18 3 20 0.20 4 4 0 0
..................................................................TAGACTAAACTGACTAGT.............................................................................................................. 18 2 8 0.13 1 0 0 1
...............................................................................................................................................................ACACGCTTAGTTGCTAAGG................ 19 3 20 0.10 2 2 0 0
..GGCGATACTTGCGAGT................................................................................................................................................................................ 16 2 15 0.07 1 1 0 0
....CGATACTTGCGAGTCT.............................................................................................................................................................................. 16 2 15 0.07 1 1 0 0

Generated: 04/24/2015 at 03:25 AM