ID:

dsi_7928

 Coordinate:

3l:11833294-11833365 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intron [3l_11833402_11833458_+]; CDS [3l_11833366_11833401_+]; exon [3l_11833366_11833401_+]; exon [3l_11833168_11833293_+]; CDS [3l_11833168_11833293_+]; intron [3l_11833294_11833365_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------####################################--------------
GAAGCTAGAGTTTGATGATACCGAGCTGCTGGCTCCATCTCCGCTAGAAAGTAAGTGAAACGTTTAAGGTCGCTAAGGAATCTACAAAATCATTCTCAAACAAATTCTTTGATTTTTCCCAGAAGATGTTATGGTCGGTGATTTCGTTCTGGCCGAAGGTAAGTGGCTGATT
**************************************************............((...((....((((((((......................))))))))......)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..........TTTGATGATACCGAGCTGCT.............................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................................ATGGTCGGTGATTTCGTTC....................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................TGTTATGGTCGGTGATTTCGTTCT...................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..........TTTGATGATACCGAGCTGCTGGCTC......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................TGTTATGGTCGGTGATTTCGTTC....................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
....CTAGAGTTTGATGATACCGAGC.................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................TTTAAGGTTGCTAAGGAC............................................................................................ 18 2 3 0.67 2 2 0 0 0 0 0 0 0
...............................................AAAGTACGTGAAACGGTTA.......................................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................GAAGGTAACTGGCTGA.. 16 1 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................TCTCAAACAAATTCTTTAA............................................................ 19 1 2 0.50 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................GAAGGTAACTGGCTG... 15 1 8 0.50 4 0 4 0 0 0 0 0 0
.....................................................................................................................GCCAGAAGATGTTAGGGT..................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0
............................................................CGTTTAAGGTCCCTAAG............................................................................................... 17 1 2 0.50 1 0 0 0 0 0 0 1 0
...................................CGTCTCCGCTAGAAACT........................................................................................................................ 17 2 9 0.11 1 0 1 0 0 0 0 0 0
...............................................AAAGTACGTGAAACG.............................................................................................................. 15 1 9 0.11 1 0 0 0 0 1 0 0 0
..........................................................................................................................AATCTGTTATCGTCGGTGA............................... 19 3 12 0.08 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................GAAGGTAACTGGCAGA.. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
............................................................................................................................................AGTTGGTTCTGCCCGAAGG............. 19 3 20 0.05 1 0 0 0 0 0 1 0 0
..............................................................................................................................................TTCGTTCGGGACGAAG.............. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................................................................................................TGGTTCTACCCGAAGGTA........... 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTTCGATCTCAAACTACTATGGCTCGACGACCGAGGTAGAGGCGATCTTTCATTCACTTTGCAAATTCCAGCGATTCCTTAGATGTTTTAGTAAGAGTTTGTTTAAGAAACTAAAAAGGGTCTTCTACAATACCAGCCACTAAAGCAAGACCGGCTTCCATTCACCGACTAA
**************************************************............((...((....((((((((......................))))))))......)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
..............................................................................................GAGTTTGTTTAAGAAATTA........................................................... 19 1 2 0.50 1 1 0 0 0
......................................................................GCGATTCGTTGGATGTT..................................................................................... 17 2 5 0.20 1 1 0 0 0
..................................GGTAGCGGCGATGATTCATT...................................................................................................................... 20 3 11 0.09 1 0 0 1 0
...................................................................................TGTTTTGGTAACCGTTTGTTTA................................................................... 22 3 11 0.09 1 0 1 0 0
....................................................................................................................................................GAACGGCTTCCATTGAACGA.... 20 3 12 0.08 1 1 0 0 0
............................GTCCGAGGGAGAGGCGGTCT............................................................................................................................ 20 3 14 0.07 1 1 0 0 0
..............TACTATGGCAGGACGA.............................................................................................................................................. 16 2 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:38 AM