ID:

dsi_7878

 Coordinate:

2r:5945802-5945951 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.4 -24.4 -24.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCAAAGTTTCCGAGGCTTGTGTCGAAAGTATTCTCCTCGAGACAGTTGAAAAGTTAGAAACAGCAGACCAGGTCCAGCAGGTAATCGTCAGGGAATTAAGTGAATGGATTCACCAAGCTCTCAAGTTGTAGCCACTAATAAATGTACACCCAACCCCTACTTTCTTTGATGACTAAAGTGTATCTTCTTGTGCGCTCTAGGTCATACCACAGTTGGGCAAGCTTTACGTGGGCAGTAGCCAGCAGCAGTA
**************************************************.........((.((.(((...)))..))..))..(((((((((((....(((((....)))))...........((((.....((........)).....)))).......)))))))))))(((.(((((((......))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...............................................................................................................................................................................................................................TTACGTGGGCAGTAGCCAGC....... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.GAAAGTTTCCGAGGCTTGGG..................................................................................................................................................................................................................................... 20 2 2 1.00 2 0 0 0 2 0 0 0 0 0
....................................................................................................................................................................................TATCTTCTTGTGGACTCTAGC................................................. 21 3 2 1.00 2 0 2 0 0 0 0 0 0 0
......................................................................................................AATGGATTCACCAAGCTCTCAAGTTGT......................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GTTGGGCAAGCTTTACGTGGGCAGT.............. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AGCTTTACGTGGGCAGTAGCC.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CATACCACAGTTGGGCAAGC............................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CATACCACAGTTGGGCAAG............................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAGCTTTACGTGGGCAGTAGC........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGGGCAGTAGCCAGCA...... 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................TTTACGTGGGCAGTAGCCAGC....... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CATACCACAGTTGGGCA............................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................CCTCGAGACAGTTGAAAAGTTAGA................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....GTTTCCGAGGCTTGTGTCG.................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................................AGGTCATCGTCAGGCA............................................................................................................................................................ 16 2 20 0.95 19 0 0 0 0 0 0 15 4 0
...........................................AGTGGACAAGTTAGAAAC............................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1
...........................................AGTGGACAAGTTAGAAA.............................................................................................................................................................................................. 17 2 20 0.15 3 0 0 0 0 0 0 0 0 3
........................................................................TCCAGCAGCTAAACGTCA................................................................................................................................................................ 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................TCTTTGAAGACTGAAGTG...................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0
...........................................................................AGTAGGTCATCGTCAGGGT............................................................................................................................................................ 19 3 18 0.11 2 1 0 0 0 0 0 0 1 0
...........................................................................AGCAGGTCATCGTCAGGCT............................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 0 2 0
............................................................................GCAGGTAATCGAGAGGG............................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 1 0 0 0 0
.........................................ACCGTTGAAAAGTTAGC................................................................................................................................................................................................ 17 2 17 0.06 1 0 0 1 0 0 0 0 0 0
............................................................................GTAGGTTATCGTCAGG.............................................................................................................................................................. 16 2 17 0.06 1 0 0 0 0 0 0 1 0 0
.........................................ACCGTTGAAAAGTTA.................................................................................................................................................................................................. 15 1 18 0.06 1 0 0 0 0 0 0 0 1 0
........................................................................................CAGTGAATTACGTGAAAGG............................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTTTGAAGACTGAAGT....................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GGTTTCAAAGGCTCCGAACACAGCTTTCATAAGAGGAGCTCTGTCAACTTTTCAATCTTTGTCGTCTGGTCCAGGTCGTCCATTAGCAGTCCCTTAATTCACTTACCTAAGTGGTTCGAGAGTTCAACATCGGTGATTATTTACATGTGGGTTGGGGATGAAAGAAACTACTGATTTCACATAGAAGAACACGCGAGATCCAGTATGGTGTCAACCCGTTCGAAATGCACCCGTCATCGGTCGTCGTCAT
**************************************************.........((.((.(((...)))..))..))..(((((((((((....(((((....)))))...........((((.....((........)).....)))).......)))))))))))(((.(((((((......))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
......................................................................................................................................................................................AGATGAACACGCGATAGCCAG............................................... 21 3 1 15.00 15 8 7 0 0 0 0 0
......................................................................................................................................................................................AGATGAACACGCGATAGCCA................................................ 20 3 4 2.50 10 5 2 0 1 0 2 0
..............................................................CGTCAGGTCCAGGGCTTCCAT....................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0
...................................................................................................................TCGAGATTTCAACATCTGAGATT................................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................................ATGCACCAGTCGTCGGTCG....... 19 2 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................................AGATGAACACGCGATAGCC................................................. 19 3 11 0.45 5 4 1 0 0 0 0 0
...............................................................................................................TGGTTTGAGAGTTCAA........................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0
.................................................................................................................................................................................CATATAGAGGAATACGCGAGA.................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................ATCAAGTATGGTGTC...................................... 15 1 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................AACACGCGATAGCCAG............................................... 16 2 18 0.22 4 2 1 0 1 0 0 0
..........................................................................................................................................................................................GAACACGCGATAGCCAGA.............................................. 18 3 20 0.10 2 1 0 0 0 0 0 1
...............................AGAGGACCTCTGTCA............................................................................................................................................................................................................ 15 1 11 0.09 1 0 0 0 1 0 0 0
.................................................................................................................................................TGTGTGTTGGGGATG.......................................................................................... 15 1 12 0.08 1 0 0 0 1 0 0 0
.............................................................TCGTCGGGTCCAGGT.............................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 1 0 0 0
................................GAGGACCTCTGTCACCCTTT...................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................GAACACGCGATAGCCA................................................ 16 2 17 0.06 1 0 0 0 1 0 0 0
..............................................................AGTCTTCTCCAGGTCGTCC......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................AACACGCGATAGCCA................................................ 15 2 20 0.05 1 0 1 0 0 0 0 0
............................................................GTAGTCTTCTCCAGGTCGT........................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:5945752-5946001 - dsi_7878 CCAA------AGT----------------TTCCGAGGCTTGTGTCGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAATCGTCAG---------------------GGA-ATT--AAGT---GAAT-------GGATTC---ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-A--------------CACCCAA--------------CCCCTACTTTCT---------TTGATGA-----CTAAAGT------------G------TATCTTCTTGTGCG--------CT-CTAGGTCATACCACAGTTGGGCAAGCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGTA
droSec2 scaffold_1:2775103-2775351 - CCAA------AGT----------------TTCCGAGGCTTGTGTCGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAATCGCCAG---------------------GGA-ATT--AAGT---GATT-------GGATTC---ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-A--------------CACCCAACGC---------------TACTTTCT---------TTGATGA-----CTAAAGT------------G------TATCTTCTTGTGCG--------CT-CTAGGTCATACCACAGTTGGGCAAGCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGTA
dm3 chr2R:5143165-5143413 - CCAA------AGT----------------ATCCGAGGCTTGTGTCGAAAGTATTCTCCCCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAATCGCCAG---------------------GGA-TTT--AAGT---GAAT-------GGATTC---ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-A--------------CACCTAACGC---------------TACTTTCC---------TTGATGA-----CTAAAGT------------T------TATCTTTCTGTGCA--------CT-CTAGGTTATACCACAGTTGGGGAAGCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGTA
droEre2 scaffold_4929:17514747-17514997 + CCAA------AGT----------------ATCCGAAGCTTCTGTCGAAAGTATTGTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAATCGCCAG---------------------GAA-TTT--AAGT---GAAC-------GGATTC---CTTAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-T--------------TTCCTC------------CA-CTCTAACTCTCC---------ATAGTGA-----CTAAAGT------------T------TATATTCTTGTACG--------TC-CTAGGTTATACCACAGTTGGGCAAGCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGTA
droYak3 2L:17797459-17797706 - TCAA------GGT----------------ATCCGAAGCTTGTGTCGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAAACGCCAG---------------------GAA-AAT--AAGT---GAAT-------GGATTC---ACTAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-T--------------ATCCTAACTC---------------TACTCTCT----------TAATGA-----CTAACGT------------T------TATAATCTTGTACG--------CT-TTAGGTTATACCACAGTTGGGCAAGCTTTACGTGGGCAGTGGCCAG---CAA------------------------------------CAATA
droEug1 scf7180000409183:785012-785263 - GAAA------GTT----------------ATCCGAAGCTTGTGTCGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GAAGACC---AAGTCC------------AGCAGGTAATG--CAG---------------------GAA-ATTGAAAGT---GAAA-------GGATTC---ACGAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------TAC---GT-T--------------TCCCTA------------TATCTCTAACTATCT---------ACCAGAA-----CTAAAGT------------T------TACTTTCTTGTACG--------TC-TTAGGTTATACCTCAGTTGGGCAAGCTCTACGTGGGCGGCAGTCAG---CAG------------------------------------CAGTA
droBia1 scf7180000301506:1581676-1581928 + GAAA------AGT----------------ATCCGAAGCCTGTGTTGAGAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CC--GAAGACC---AAGTGC------------AGCAGGTAACC--CAG---------------------GCA-AAT--AAGT---GAAA----A--GGTTTC---GCCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------TAT---GT-C--------------TTACCC--GC--------TAAGCCTTGATCTCT---------GCCAGAA-----CTAATTG------------G------TATTTTCTTGTTCG--------CC-CTAGGTTATACCACAGTTGGGCAAGCTCTATGTGGGCGGCAGCCAG---CAG------------------------------------CAGTA
droTak1 scf7180000415274:100598-100848 - AAAA------AGT----------------ATCCGAAGCTTGTGTTGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GAGGACC---AAGTCC------------AGCAGGTAACG--CAG---------------------GAA-ATT--AAGC---GAAA-------GGGTCC---ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------CAT---GTTT--------------CTCCCC------------CATTCTTTACCGTCT---------ACATGGA-----CTAAAGC------------G------TCTTCTCTTGTGTG--------CC-TTAGGTCATACCGCAGTTGGGCAAGCTCTACGTTGGCGGCAACCAG---CAG------------------------------------CAGTA
droEle1 scf7180000491201:967602-967859 - GCAAA-AA--TGT----------------ATCCGTAGCTTGTGTCGAAAGTATTCTCCTCGAGACGGT---TGAAAA-GTTAGAAA------------CA--GAAGACC---CAGTGC------------AGCAGGTAACG--CCG---------------------ACG-CGG--AAGT---AAAA----ACCGTATTC---GCCAAGCTCT-CAAGTTGTAGCCATT-------------AATA--------GTT---GT-T--------------TTTCAAAT-------------TACCCACTCTTA---------ACAAAAA-----TTAACAT------------T------CGCGTTCTTGTATG--------CC-TTAGGTTATACCACAAATGGGCAAGCTCTACGTGGGCAGCGGCCAG---CAG------CT---------------------------GCAGTA
droRho1 scf7180000777222:50961-51214 + AAAA------AGT----------------ATCCGAAGCTTGTGTCGAAAGTATTCTCCTCGAGACGGT---TGAAAA-GTTAGAAA------------CA--GAAGACC---CATTTC------------AGCAGGTAACG--CAG---------------------GAA-AAT--AAGT---GAAA-------GGATTC---ACAAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------------GT-A--------------TTTTTAAAAT-----------TACCTACTCTTA---------ACAAAGA-----TTTAAAT------------T------TATATTCTTGTGTG--------CC-TTAGGTTATACCACAATTGGGCAAGCTCTACGTGGGCAGCGGCCAG---CAG---CAACA---------------------------ACAGTA
droFic1 scf7180000453851:1131815-1132070 + GAAA------ATT----------------ATCCCTAGCTTGTGTCGAAAGCATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GAAGACC---AAGTCC------------CGCAGGTAACAAGCAG------------CAG------GAT-GCA--AACT---AAAC-------AGATT----ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------GCT-TTGT-----------------TCCCC------------AATCCGTTACTCCGT---TA----ACAACGA-----CTTAAGT------------T------GAGTCTCTTGTATG--------CC-TTAGGTTATACCACAGTTGGGCAAGCTCTTCGTGGGCGGCAACCAG---CAG------------------------------------CAGTA
droKik1 scf7180000302476:536024-536302 - CGAAAAAAGAATT----------------ATCCGAGGCCTGTGTCGAGAGTATTCACCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GAAGACCAAAAAGTGG------------ATCAGGTAACAAACAG------------GAG------AAG-ATT--AAGCTAAGAAA-------GGATTCCTTACCCAGCTCT-CAAGTTGTAGCCTTTGCCTT--------AGTA--------GTTGTTGT-T--------------TTTCT----T---------------TAGTATCCTGGAA----ACCCTCA-----CTAAAGT------------TAAG---CTTTTCCTTGTGTT--------TG-TTAGGTTATACCGCAGTTGGGAAAACTGTATGTGGGCTCTGGCCAG---CAG------------------------------------CAATA
droAna3 scaffold_13266:8426040-8426341 + CCACAGAA--AGT----------------TTCTGAGGCTTATGTCGAGAGCATTGTGCTCGAGACGGT---TGAGAA-GTTAGAGT------------CA--GAAGTGC---CAGTCC------AAGTGAATCAGGTAAAAAAGGGGGTACCAGGTACCAGATACCGGATACCA--CGGT----AAAGGACAT-ACA-TA---TCCAAGCTCT-CGAGTTGTAGCCAAT-------------TGAA-----ATAGTT---GT-C--------------CTTTGAA--------GGA---------------GGTATA----TGATAA-----TAATCAT------------A------TATATTCTTATTCGAACCATCCCT-TTAGGTTATACCGCAGCTGGGCAAGCTCTATGTAGGTGGCGGCCAG---CAACAGCAGCA---------------------------GCAGTA
droBip1 scf7180000396759:386495-386785 - CCACATAA--AGT----------------ATCCGAGGGTTATGTTGAGAGCATTCTGCTCGAAACGGT---TGAGAA-GTTAGAAT------------CA--GAAGTCC---CAGTCCAAGTCCAAGTGAATCAGGTAACA--CA-----------------------AT-GCC--AAGCTTACAAT----GT-ACA-AT---GCCAAGCTCT-CAAGTTGTAGCTACT-------------T--A--------GTT---GT-CCTACCAAGGAGGTCCTACG----AAAAAGTAC---------------TGAAAA-------TAA-----CAATAAA------------A------TAAATTCTTTTTCA-ACCAACCCT-TTAGGTTATACCGCAGCTGGGCAAGCTCTATGTAGGCGGCGGCCAG---CAACAGCAGCA---------------------------GCAGTA
dp5 3:9209575-9209864 - CCAGTCGC--AGTCGCTGTTGCAGTCGCAGTCGGAGGCATTCGTTGAGAGTGTATTGCTTGAGACAGTTGTTGAAAA-GTTAGACAGTTCGACGAGTGAA--GAGGAGC---AGCTGG------------AGCAGGTAAACGGCCC------------CAG---------------AGGC---AGAC----AC-AG--AT---GCAGAGCTCT-CAAGTTGTTTCCAAA-------------GATATTGATATAAAT---GA-A--------------TACAGAA--------TAC---------------AGAATATGCCAAACCA-----ATAACAT------------C------TCTCAATTCCTTTG--------CC-ACAGGTTATACCGCAGTTGGGAAAACTCTATGTGGGCAGCAGTCAA---CAG------------------------------------CAGTA
droPer2 scaffold_4:4532556-4532850 - CCAGTCGC--AGTCGCTGTTGCAGTCGCAGTCGGAGGCATTCGTTGAGAGTGTATTGCTTGAGACAGTTGTTGAAAA-GTTAGACAGTTCGACGAGTGAA--GAGGAGC---AGCTGG------------AGCAGGTAAACGGCCC------------CAG---------------AGGC---AGAC-------ACACAT---GCAGAGCTCT-CAAGTTGTTTCCACA-------------GATATTGATATAAAT---GA-A--------------TACAGAA--------TAC---------------AGAATATGCCAAACCAATGGGCTAACAT------------C------TCTTAATTCTTTTG--------CC-ACAGGTTATACCGCAGTTGGGAAAACTCTATGTGGGCAGCAGTCAA---CAG------------------------------------CAGTA
droWil2 scf2_1100000004822:1802825-1802927 + CT-------------------------------------TTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGA-----TTAAAAGTTAAATACATTTT------CAATATTCTATTAT--------TC-TCAGGTTATACCACAGCTAAGCAAACTCTATGTGGGCAATAATCAA---CAG------------------------------------CAGCA
droVir3 scaffold_12875:14430375-14430633 - CCAC------AGC----------------AGAGCCTATTGCTATCGAAAGTGTTTTAATAGAAAGCGT---TGAGTCTGTTCAACCGCTCGACGAGGTAAAAGTTGCCC---ATCTAC------------AGC-----------------------------------GA-TT-------------------------AT---TCAGAGCTTTTGCAGTTGCACAAAAAAA-AAAAAAAACTA-----------ATT---AA-C--------------TATAAAT--------------------------AAACGAAGCTTTACAATTGCATTAACCA------------A------TCTA--CATGTTTG---------T-ATAGGTCATACCGCAGCTGGGCAAGCTCTATGTGGGCACACAGCAGCAGCAGCAGCAGCA---------------------------GCAGTT
droMoj3 scaffold_6496:9895998-9896059 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGTCATACCGCAGCTAGGCAAGCTCTATGTGGGCACTCAGCAG---CAGCCGCAGTT---------------------------GCCCTA
droGri2 scaffold_15245:14426125-14426416 - CCAA------GGA----------------GACAATAGC---TATTGAAAGTGTTTTCATAGAAACGGT---TGAGTGCGTTAAACCACTCGATGAGGTAAACGACGAGC---AACAAG------------AA-----------------------------------------C--AATT---CAAC-------AAATT-----CAGAGCTTT-CCAGTTGCACACCAAAACAAACAAAACTAACA--------CAT---CC-C--------------TTTTAC------------AA-ACTGGGGTATTT---------ATAT---------TAATCT------------GAATCTTTACATT-----TTG--------CTATCAGGTCATACCGCAGCTGGGTAAGCTTTATGTGAGCACACAGCAGCAGCAACAGCAGCAACAGCAACAACAGCAGCAGCAACAATTGCCCTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCAA------AGT----------------TTCCGAGGCTTGTGTCGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAATCGTCAG---------------------GGA-ATT--AAGT---GAAT-------GGATTC---ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-A--------------CACCCAA--------------CCCCTACTTTCT---------TTGATGA-----CTAAAGT------------G------TATCTTCTTGTGCG--------CT-CTAGGTCATACCACAGTTGGGCAAGCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTGGGCAGTAGCCAG---C...........................................2011.00101000000000000000
........................................................................................................................................................................................AAT-------GGATTC---ACCAAGCTCT-CAAGTTGT..............................................................................................................................................................................................................................................................2711.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGCAAGCTTTACGTGGGCAGT.....................................................2511.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTTACGTGGGCAGTAGCC.................................................2111.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CATACCACAGTTGGGCAAGC...................................................................2011.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CATACCACAGTTGGGCAAG....................................................................1911.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTTACGTGGGCAGTAGC..................................................2111.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGTAGCCAG---CA..........................................1611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGTGGGCAGTAGCCAG---C...........................................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CATACCACAGTTGGGCA......................................................................1711.00100000001000000000
........................................................CCTCGAGACAGT---TGAAAA-GTTAGA........................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
...........GT----------------TTCCGAGGCTTGTGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
droSec2
CCAA------AGT----------------TTCCGAGGCTTGTGTCGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAATCGCCAG---------------------GGA-ATT--AAGT---GATT-------GGATTC---ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-A--------------CACCCAACGC---------------TACTTTCT---------TTGATGA-----CTAAAGT------------G------TATCTTCTTGTGCG--------CT-CTAGGTCATACCACAGTTGGGCAAGCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................TCC------------AGCAGGTAATCGCCAG---------------------GGT-.................................................................................................................................................................................................................................................................................................................2211.0010010
..................................................................................................................................AGCAGGTAATCGCCAG---------------------GGA-AT...............................................................................................................................................................................................................................................................................................................2111.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................CATACCACAGTTGGGCAAGCTTTACGT............................................................2711.0010100
........................................................................GAAAA-GTTAGAAA------------CA--GCAGACC---............................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................GTCATACCACAGTTGGGCAAGC...................................................................2211.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAAGCTTTACGTGGGCA.......................................................2011.0010100
.CAA------AGT----------------TTCCGAGGCTTGTGTCGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..........AGT----------------TTCCGAGGCTTGTGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010010
dm3
CCAA------AGT----------------ATCCGAGGCTTGTGTCGAAAGTATTCTCCCCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAATCGCCAG---------------------GGA-TTT--AAGT---GAAT-------GGATTC---ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-A--------------CACCTAACGC---------------TACTTTCC---------TTGATGA-----CTAAAGT------------T------TATCTTTCTGTGCA--------CT-CTAGGTTATACCACAGTTGGGGAAGCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGGAAGCTTTACGTG...........................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGGAAGCTTTACGTGGGC........................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
............................................................................A-GTTAGAAA------------CA--GCAGACC---AGGTCC------------A.........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAAGCTTTACGTGGGCAGT.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGGGGAAGCTTTA...............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTGCA--------CT-CTAG.........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................GCAGACC---AGGTCC------------AGCAG.....................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGGTTATACCACAGTTGGGGAAG....................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGCTTTACGTGGGCA.......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACGTGGGCAGTAGCCAG---C...........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAAGCTTTACGTGG..........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGGGGAAGCTTTACGT............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAAGCTTTACGTGGGCAGTAGC..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................CGAGGCTTGTGTCGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGGGAAGCTTTACGTGGGCAGTAGCC.................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGT.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................C---AGGTCC------------AGCAGGTAATCGCCAG---------------------GGA-A................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAAGCTTTACGTGGGCAGTAGCC.................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AGGTCC------------AGCAGGTAATCG..............................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGGAAGCTTTACGTGGGCAGT.....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GTAATCGCCAG---------------------GGA-TTT--AAGT---GAAT-------G.........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................T-------------AATA--------AAT---GT-A--------------CACCTAACGC---------------TACTT........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GGTTATACCACAGTTGGGGA......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATACCACAGTTGGGGAAGCT..................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAG..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TCC---------TTGATGA-----CTAAAGT------------T------TATCTT................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGGGCAGTAGCCAG---C...........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GT------------T------TATCTTTCTGTGCA--------CT-C............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGGTTATACCACAGTTGGGGA......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCAA------AGT----------------ATCCGAAGCTTCTGTCGAAAGTATTGTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAATCGCCAG---------------------GAA-TTT--AAGT---GAAC-------GGATTC---CTTAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-T--------------TTCCTC------------CA-CTCTAACTCTCC---------ATAGTGA-----CTAAAGT------------T------TATATTCTTGTACG--------TC-CTAGGTTATACCACAGTTGGGCAAGCTTTACGTGGGCAGTAGCCAG---CAG------------------------------------CAGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................C------------AGCAGGTAATCGCCAG---------------------GAA-TTT--............................................................................................................................................................................................................................................................................................................2311.0010000010
................................................................................................................................................................................................................GCTCT-CAAGTTGTAGCCACT-------------AATA--------..............................................................................................................................................................................................................................2411.0010000010
droYak3
TCAA------GGT----------------ATCCGAAGCTTGTGTCGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GCAGACC---AGGTCC------------AGCAGGTAAACGCCAG---------------------GAA-AAT--AAGT---GAAT-------GGATTC---ACTAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------AAT---GT-T--------------ATCCTAACTC---------------TACTCTCT----------TAATGA-----CTAACGT------------T------TATAATCTTGTACG--------CT-TTAGGTTATACCACAGTTGGGCAAGCTTTACGTGGGCAGTGGCCAG---CAA------------------------------------CAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGCAAGCTTTACGTGGGCAGT.....................................................2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GTTATACCACAGTTGGGC.......................................................................1811.00100100000000
.........................................................................................................................................AAACGCCAG---------------------GAA-AAT--AAGT---.....................................................................................................................................................................................................................................................................................................1911.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTTACGTGGGCAGTGGCCA................................................2311.00100000010000
droEug1
GAAA------GTT----------------ATCCGAAGCTTGTGTCGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GAAGACC---AAGTCC------------AGCAGGTAATG--CAG---------------------GAA-ATTGAAAGT---GAAA-------GGATTC---ACGAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------TAC---GT-T--------------TCCCTA------------TATCTCTAACTATCT---------ACCAGAA-----CTAAAGT------------T------TACTTTCTTGTACG--------TC-TTAGGTTATACCTCAGTTGGGCAAGCTCTACGTGGGCGGCAGTCAG---CAG------------------------------------CAGTASizeHit CountTotal NormTotal
No Reads
droBia1
GAAA------AGT----------------ATCCGAAGCCTGTGTTGAGAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CC--GAAGACC---AAGTGC------------AGCAGGTAACC--CAG---------------------GCA-AAT--AAGT---GAAA----A--GGTTTC---GCCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------TAT---GT-C--------------TTACCC--GC--------TAAGCCTTGATCTCT---------GCCAGAA-----CTAATTG------------G------TATTTTCTTGTTCG--------CC-CTAGGTTATACCACAGTTGGGCAAGCTCTATGTGGGCGGCAGCCAG---CAG------------------------------------CAGTASizeHit CountTotal NormTotal
No Reads
droTak1
AAAA------AGT----------------ATCCGAAGCTTGTGTTGAAAGTATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GAGGACC---AAGTCC------------AGCAGGTAACG--CAG---------------------GAA-ATT--AAGC---GAAA-------GGGTCC---ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------CAT---GTTT--------------CTCCCC------------CATTCTTTACCGTCT---------ACATGGA-----CTAAAGC------------G------TCTTCTCTTGTGTG--------CC-TTAGGTCATACCGCAGTTGGGCAAGCTCTACGTTGGCGGCAACCAG---CAG------------------------------------CAGTASizeHit CountTotal NormTotal
No Reads
droEle1
GCAAA-AA--TGT----------------ATCCGTAGCTTGTGTCGAAAGTATTCTCCTCGAGACGGT---TGAAAA-GTTAGAAA------------CA--GAAGACC---CAGTGC------------AGCAGGTAACG--CCG---------------------ACG-CGG--AAGT---AAAA----ACCGTATTC---GCCAAGCTCT-CAAGTTGTAGCCATT-------------AATA--------GTT---GT-T--------------TTTCAAAT-------------TACCCACTCTTA---------ACAAAAA-----TTAACAT------------T------CGCGTTCTTGTATG--------CC-TTAGGTTATACCACAAATGGGCAAGCTCTACGTGGGCAGCGGCCAG---CAG------CT---------------------------GCAGTASizeHit CountTotal NormTotal
No Reads
droRho1
AAAA------AGT----------------ATCCGAAGCTTGTGTCGAAAGTATTCTCCTCGAGACGGT---TGAAAA-GTTAGAAA------------CA--GAAGACC---CATTTC------------AGCAGGTAACG--CAG---------------------GAA-AAT--AAGT---GAAA-------GGATTC---ACAAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------------GT-A--------------TTTTTAAAAT-----------TACCTACTCTTA---------ACAAAGA-----TTTAAAT------------T------TATATTCTTGTGTG--------CC-TTAGGTTATACCACAATTGGGCAAGCTCTACGTGGGCAGCGGCCAG---CAG---CAACA---------------------------ACAGTASizeHit CountTotal NormTotal
No Reads
droFic1
GAAA------ATT----------------ATCCCTAGCTTGTGTCGAAAGCATTCTCCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GAAGACC---AAGTCC------------CGCAGGTAACAAGCAG------------CAG------GAT-GCA--AACT---AAAC-------AGATT----ACCAAGCTCT-CAAGTTGTAGCCACT-------------AATA--------GCT-TTGT-----------------TCCCC------------AATCCGTTACTCCGT---TA----ACAACGA-----CTTAAGT------------T------GAGTCTCTTGTATG--------CC-TTAGGTTATACCACAGTTGGGCAAGCTCTTCGTGGGCGGCAACCAG---CAG------------------------------------CAGTASizeHit CountTotal NormTotal
No Reads
droKik1
CGAAAAAAGAATT----------------ATCCGAGGCCTGTGTCGAGAGTATTCACCTCGAGACAGT---TGAAAA-GTTAGAAA------------CA--GAAGACCAAAAAGTGG------------ATCAGGTAACAAACAG------------GAG------AAG-ATT--AAGCTAAGAAA-------GGATTCCTTACCCAGCTCT-CAAGTTGTAGCCTTTGCCTT--------AGTA--------GTTGTTGT-T--------------TTTCT----T---------------TAGTATCCTGGAA----ACCCTCA-----CTAAAGT------------TAAG---CTTTTCCTTGTGTT--------TG-TTAGGTTATACCGCAGTTGGGAAAACTGTATGTGGGCTCTGGCCAG---CAG------------------------------------CAATASizeHit CountTotal NormTotal
No Reads
droAna3
CCACAGAA--AGT----------------TTCTGAGGCTTATGTCGAGAGCATTGTGCTCGAGACGGT---TGAGAA-GTTAGAGT------------CA--GAAGTGC---CAGTCC------AAGTGAATCAGGTAAAAAAGGGGGTACCAGGTACCAGATACCGGATACCA--CGGT----AAAGGACAT-ACA-TA---TCCAAGCTCT-CGAGTTGTAGCCAAT-------------TGAA-----ATAGTT---GT-C--------------CTTTGAA--------GGA---------------GGTATA----TGATAA-----TAATCAT------------A------TATATTCTTATTCGAACCATCCCT-TTAGGTTATACCGCAGCTGGGCAAGCTCTATGTAGGTGGCGGCCAG---CAACAGCAGCA---------------------------GCAGTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................GCTTATGTCGAGAGCATTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.................................................GCATTGTGCTCGAGACGGT---TG...................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................................................................................................CA--GAAGTGC---CAGTCC------AAGTGG..........................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGGCGGCCAG---CAACAGC.....................................2211.001100000
....................................................TTGTGCTCGAGACGGT---TGAGA................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......AA--AGT----------------TTCTGAGGCTTATGTCGAGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........................................................................GAA-GTTAGAGT------------CA--GAAGTGC---CAGTC.......................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAG---CAACAGCAGCA---------------------------GCAGT.2211.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTAGGTGGCGGCCAG---............................................1911.001100000
.......A--AGT----------------TTCTGAGGCTTATGTCGAGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
................................................AGCATTGTGCTCGAGACGGT---TGAGA................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................................................................................................................................GAATCAGGTAAAAAAGGGGGTACCAG..................................................................................................................................................................................................................................................................................................................................2611.001010000
droBip1
CCACATAA--AGT----------------ATCCGAGGGTTATGTTGAGAGCATTCTGCTCGAAACGGT---TGAGAA-GTTAGAAT------------CA--GAAGTCC---CAGTCCAAGTCCAAGTGAATCAGGTAACA--CA-----------------------AT-GCC--AAGCTTACAAT----GT-ACA-AT---GCCAAGCTCT-CAAGTTGTAGCTACT-------------T--A--------GTT---GT-CCTACCAAGGAGGTCCTACG----AAAAAGTAC---------------TGAAAA-------TAA-----CAATAAA------------A------TAAATTCTTTTTCA-ACCAACCCT-TTAGGTTATACCGCAGCTGGGCAAGCTCTATGTAGGCGGCGGCCAG---CAACAGCAGCA---------------------------GCAGTASizeHit CountTotal NormTotal
No Reads
dp5
CCAGTCGC--AGTCGCTGTTGCAGTCGCAGTCGGAGGCATTCGTTGAGAGTGTATTGCTTGAGACAGTTGTTGAAAA-GTTAGACAGTTCGACGAGTGAA--GAGGAGC---AGCTGG------------AGCAGGTAAACGGCCC------------CAG---------------AGGC---AGAC----AC-AG--AT---GCAGAGCTCT-CAAGTTGTTTCCAAA-------------GATATTGATATAAAT---GA-A--------------TACAGAA--------TAC---------------AGAATATGCCAAACCA-----ATAACAT------------C------TCTCAATTCCTTTG--------CC-ACAGGTTATACCGCAGTTGGGAAAACTCTATGTGGGCAGCAGTCAA---CAG------------------------------------CAGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTCTATGTG...........................................................1911.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAACTCTATGTGGG.........................................................1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGGAAAACTCTATGTGG..........................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGGTTATACCGCAGTTGGGA.......................................................................2011.0010000100000
..........................................................................................GACGAGTGAA--GAGGAGC---AGCTGG------------..........................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTATGTGGGCAGCA....................................................1911.0010001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCAGCAGTCAA---CAG------------------------------------C....1911.0010100000000
.....................................................ATTGCTTGAGACAGTTGTTGAAA................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTATGTGGGCAGCAGT..................................................2111.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTCTATGTGGGCAGCA....................................................2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACTCTATGTGGGCAGCAGT..................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGTGGGCAGCAGTCAA---CAG------------------------------------CAGT.2711.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTATGTGGGCAGCAGTC.................................................2211.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAAACTCTATGTGGGC........................................................2011.0010000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTATGTGGGCAGCAGTCAA---CAG------------------------------------CAG..2911.0010010000000
droPer2
CCAGTCGC--AGTCGCTGTTGCAGTCGCAGTCGGAGGCATTCGTTGAGAGTGTATTGCTTGAGACAGTTGTTGAAAA-GTTAGACAGTTCGACGAGTGAA--GAGGAGC---AGCTGG------------AGCAGGTAAACGGCCC------------CAG---------------AGGC---AGAC-------ACACAT---GCAGAGCTCT-CAAGTTGTTTCCACA-------------GATATTGATATAAAT---GA-A--------------TACAGAA--------TAC---------------AGAATATGCCAAACCAATGGGCTAACAT------------C------TCTTAATTCTTTTG--------CC-ACAGGTTATACCGCAGTTGGGAAAACTCTATGTGGGCAGCAGTCAA---CAG------------------------------------CAGTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTCTATGTGGG.........................................................2111.001000001
.....................................................ATTGCTTGAGACAGTTGTTGA..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCAGCAGTCAA---CAG------------------------------------C....1911.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTCTATGTGG..........................................................2011.001010000
.................................................GTGTATTGCTTGAGACAGTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
......................................................................................GTTCGACGAGTGAA--GAGGAGC---............................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................GGTTATACCGCAGTTGGGAA......................................................................2011.001000010
droWil2
CT-------------------------------------TTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGA-----TTAAAAGTTAAATACATTTT------CAATATTCTATTAT--------TC-TCAGGTTATACCACAGCTAAGCAAACTCTATGTGGGCAATAATCAA---CAG------------------------------------CAGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................AGGTTATACCACAGCTAAGCA......................................................................2111.00100001
droVir3
CCAC------AGC----------------AGAGCCTATTGCTATCGAAAGTGTTTTAATAGAAAGCGT---TGAGTCTGTTCAACCGCTCGACGAGGTAAAAGTTGCCC---ATCTAC------------AGC-----------------------------------GA-TT-------------------------AT---TCAGAGCTTTTGCAGTTGCACAAAAAAA-AAAAAAAACTA-----------ATT---AA-C--------------TATAAAT--------------------------AAACGAAGCTTTACAATTGCATTAACCA------------A------TCTA--CATGTTTG---------T-ATAGGTCATACCGCAGCTGGGCAAGCTCTATGTGGGCACACAGCAGCAGCAGCAGCAGCA---------------------------GCAGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCTGGGCAAGCTCTATGTG...........................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GGTCATACCGCAGCTGGGCA......................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................GAGTCTGTTCAACCGCTCGAC...............................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GTCATACCGCAGCTGGGCA......................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
........................................................AATAGAAAGCGT---TGAGTCT..............................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................GTTCAACCGCTCGACGAG............................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................GA-TT-------------------------AT---TCAGAGCTTTTGCA...................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGCAGCAGCAGCA.......................................19110.182000000000000001100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAGCAGCAGCAGCAGCA....................................21200.051000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGCAGCAGCAGCAGCAGCA---------------------------GC....25200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGTCATACCGCAGCTAGGCAAGCTCTATGTGGGCACTCAGCAG---CAGCCGCAGTT---------------------------GCCCTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................TACCGCAGCTAGGCAAGCTCTATGTGG..........................................................2711.001100000
droGri2
CCAA------GGA----------------GACAATAGC---TATTGAAAGTGTTTTCATAGAAACGGT---TGAGTGCGTTAAACCACTCGATGAGGTAAACGACGAGC---AACAAG------------AA-----------------------------------------C--AATT---CAAC-------AAATT-----CAGAGCTTT-CCAGTTGCACACCAAAACAAACAAAACTAACA--------CAT---CC-C--------------TTTTAC------------AA-ACTGGGGTATTT---------ATAT---------TAATCT------------GAATCTTTACATT-----TTG--------CTATCAGGTCATACCGCAGCTGGGTAAGCTTTATGTGAGCACACAGCAGCAGCAACAGCAGCAACAGCAACAACAGCAGCAGCAACAATTGCCCTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAAT.......21200.05110

Generated: 05/19/2015 at 12:13 PM