ID:

dsi_7863

 Coordinate:

4:157870-158019 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.6 -20.6 -20.6

Flybase annnotation

exon [4_157007_157869_-]; CDS [4_157007_157869_-]; intron [4_157870_159283_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCACGTGAACCATATACAAGTGACACCTTCTTTACTAGTAATATATATAAATATATTTTAAAAAGTTTCGATGTGAACTATTTAGCTATTTTAGCTGTTATAGTTTTGCCTTGAAACAAAAGACTTCAGTTGGACTTTCTGTGTGGCGTATATATACATGCACAAGCATACATATGTTATTAATTTTTTTAATCTTTTAGGTGGAAATGCAGCAGCTAAGGCATGCATACAACCGCCTGGTAAACCAAAT
**********************************************************......(((((((.(((((((((.((((((...))))))..)))).))))).)))))))...........((((.((.....)).)))).......************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 M025
embryo
 M053
female body
 SRR902008
ovaries
..................................................................................................................................TGGACTTTCTGTGTGGCGTATATA................................................................................................ 24 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCAGTTGGACTTTCTGTGTGGCGTA.................................................................................................... 25 0 1 4.00 4 1 1 1 0 1 0 0 0 0 0 0
........................................................................................................TTTGCCTTGAAACAAAAGACTTCAGTTGG..................................................................................................................... 29 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AATGCAGCAGCTAAGGCATGC........................ 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
..............................................................................................................TTGAAACAAAAGACTTCAGTTGGACTT................................................................................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCAGTTGGACTTTCTGTGTGGCGT..................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAAGGCATGCATACAACCGCCTGGTA........ 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................TGAAACAAAAGACTTCAGTTGGACTT................................................................................................................. 26 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................GACTTCAGTTGGACTTTCTGTGTGGCGT..................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAAGGCATGCATACAACC................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................TATTTAGCTATTTTAGCTATTATAGT.................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GAAATGCAGCAGCTAAGGC............................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................TTCTGTGTGGCGTATATATACATGCACA...................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................TAAAAAGTTTCGATGTGAACT........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................TTCAGTTGGACTTTCTGTGTGGCG...................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGCAGAAGCATACATATGTTATGTAT.................................................................. 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................AAAGACTTCAGTTGGACTTTCTGTGT.......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TATTAATTTTTTTAATCTTTTAGGTGGAA............................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TGGACTTTCTGTGTGGCGTATATAT............................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAAAGACTTCAGTTGGACTTTCTGTG........................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TGCCTTGAAACAAAAGACTTCAGTTGGA.................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CTTCAGTTGGACTTTCTGTGTGGC....................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................TTTGCCTTGAAACAAAAGACTTCAGT........................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GACTTCAGTTGGACTTTCTGTGTGGC....................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................TGGACTTTCTGTGTGGCGTATATATAC............................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................CAGTTGGACTTTCTGTGTGGC....................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................TACATATGTTATTAATTTTTTTAATCT....................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TAAGGCATGCATACAACCGCCTGGT......... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TTCTGTGTGGCGTATATATA.............................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................ATGCAGCAGCTAAGGCATGC........................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................GCATACAACCGCCTGGTAAACCAAA. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................TTAACGGTGGAAATGCAGCAGCTAA............................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................AGACTTCAGTTGGACTTTCTGTGT.......................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTCTGTGTGGCGTATATATACA............................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AATCTTTTAGGTGGAAATGCAGCAGC.................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................ATATTTTAAAAAGTTTCGATGTGAAC............................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................ACGGTGGAAATGCAGCAGCTAAGGCA........................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................TTCAGTTGGACTTTCTGTGTGGTGTA.................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CAGTTGGACTTTCTGTGTGGCGTA.................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................CAGTTGGACTTTCTGTGTGG........................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................TAAGGCATGCATACAACCGCCTGGA......... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................TCTGCCTTGAAACAAAAGACTTCAGTTGG..................................................................................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TATTTTAGCTATTATAGTTTTGCCTTGA........................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TTCAGTTGGACTTTCTGTGTGGCGTA.................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TAACGGTGGAAATGCAGCAGCTAAGGCA........................... 28 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................CAAAAGACTTCAGTTGGACT.................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................TGAAACAAAAGACTTCAGTTGGACTTTC............................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................TGAACTATTTAGCTATTTTAGCTA......................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTTAGGTGGAAATGCAGCAGC.................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................AGACTTCAGTTGGACTTTCTGTGC.......................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.............................................TAAAAATATATTTTAAAATGTTTCGATGTGA.............................................................................................................................................................................. 31 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................GTTTTGCCTTGAAAAAAA.................................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................GAAAGTTTCGATGTGAA............................................................................................................................................................................. 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
........................ACCATCTTTACTGGTAAGA............................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................AGTGTCGATGTGAACAATGT....................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................TTCTAGTTTTGTCTTGAA....................................................................................................................................... 18 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGTGCACTTGGTATATGTTCACTGTGGAAGAAATGATCATTATATATATTTATATAAAATTTTTCAAAGCTACACTTGATAAATCGATAAAATCGACAATATCAAAACGGAACTTTGTTTTCTGAAGTCAACCTGAAAGACACACCGCATATATATGTACGTGTTCGTATGTATACAATAATTAAAAAAATTAGAAAATCCACCTTTACGTCGTCGATTCCGTACGTATGTTGGCGGACCATTTGGTTTA
************************************************************************************************......(((((((.(((((((((.((((((...))))))..)))).))))).)))))))...........((((.((.....)).)))).......********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...GCACTTGGTATATGTTCACTGTGG............................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................GGTTCGTATGTATACACCAATT................................................................... 22 3 3 0.33 1 0 1 0 0
........................................................................................................................................................................................AAAAAATTAGAAACTC.................................................. 16 1 17 0.12 2 0 0 2 0
....................................................................................................................................................................................................................................TGTTGTCGCACCACTTGGT... 19 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:157820-158069 - dsi_7863 GCAC---------G---------TG-----------------------AACCATATACAA---------GTGACA-------------------CCTT---------------------------------------------------------------------CTTTACTAGTAATATA-TATAAATATATTT------------------------TAAAAAGTTTCGATG-------------------------------TGAACTATTTAGCTATTTTAGCT---GTTATAGTTTTGCCTTGAAACAAAAGACTTCAG--TTGGACTTTCTGTGT-GGCGTATAT---------------------------------------------------------------------------ATACAT------------------------------------------------------------------------GC-----ACAAGCATACATATGTTATTA----ATTT-TT-----TTAATCTTTTAGG-TGGAAATGCAGCAGCTAAGGCATGCATACAACCGCCTGGTAAACCAAAT
droSec2 scaffold_52:155513-155762 - GCAC---------G---------TG-----------------------AACCATATACAA---------GTGACA-------------------CCTT---------------------------------------------------------------------CTTTACTAGTAATATA-TATAAATATATTT------------------------TAAAAAGTTTCGATG-------------------------------TGAACTATTTAGCTATTTTAGCT---ATTATAGTTTTGCCTTGAAACAAAAGACTTCAT--TTGGACTTTCTGTGT-GGCGTATAT---------------------------------------------------------------------------ATACAT------------------------------------------------------------------------GC-----ACAAGCATACATATGTTATTA----ATTT-TT-----GTAATCTTTTAGG-TGGAAATGCAGCAACTAAGGCATGCATACAACCGCCTGGTAAACCAAAT
dm3 chr4:207417-207710 - GCAA---------G---------TG-----------------------AACCATATACAA---------GTGACA-------------------CCTTTAGGGGTCGAATTTTTC------------------------------------TTAGTATGCTCTCTTACTGTACTAGTAAAATT-TATAAATGTTTTT------------------------CAACAAGTTTCACTT-------------------------------TGAACTATTTAGTTATTTTAGCT---ATTAACGTTTAGCCTTGAAAGAAAACACTGCAA--TTGGGATTTCTGGGT-GGCGCATAC---------------------------------------------------------------------------ATACATACC---------------------------------------------------------------AAAAATTC-----ACAAGTATACATATGTTAATCATTA--TT-TT-----TAAATTTTTTAGG-TGGAAATGCAGCAGCTAAGGCAGGCATACAACCGCCTGGTAAATCAAAT
droEre2 scaffold_4512:1113916-1114243 + ACCT---------G---------TT-----------------------A---------------------------------------------------------------------------------CATACTT---TTA-AAGGAACCTAGTATACTCTTTCACACTAAGAGTAACATT-TATAAAAACAATC------------------------TAATA-GCTTAGATT-----------------------TGCCAC------------------T-AAGCT---GTTAACTTTTAGCCTTGAAACAAAACACCTCAA--A-----------GGC-AGCGCAAA---------------------ATATAAATACAAAT-----------------------------------------ATAAATACTTGGAAATGCAAAACTCTTCAAAAGGTTATTCCCAATAGTTTTAAAGCAGAGACTAGTTTGTATACAAATATAC-ATATG----TACATATAGTAAACATTTTTTT-GT-----TGCATATTTTAGG-TCGAGATGCAGCAGCTACGGCAAGCGTACAACCGCCTTGTAAATCAAAT
droYak3 4:187964-188233 - AGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATT-CATAACA-T-TTC------------------------TAACAAGTTTTGATG----------------------TTGCCAC------------------TAGGCCT---ATTAACTTTTAGCTTTGAAACAAAAGGCTTCAAAGCTAGGC--------T-TGCGTAGAT---------------------------------------------------------------------------ATACATACTTGGATATGAAAAACACTTGAAAAGGTTCTTCCGAATATTGTTGAAGCAGAGACTTGTATATATACAAATAT---------ACATACATATGTTAATCAAT----T-TTTCATTTGTATATTTTAGG-TGGAGATGCAGCAGCTTCGGCAGGCATACAACCGCCTTGTAAATCAAAT
droEug1 scf7180000408900:336472-336587 - CTTA---------T--------------AATAGTCATAAATATTATTTTAAATAAACTAA---------AC----------------------------------------------------------------------------------------------------------------------AA-TG-TTT-----------------------TAAAA--------------TATT-------------------------------TTCCATTTTTTACTT---ATTATAATGTCTATTTAAAACCAAAGACTTCTT--CCAGATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGT
droBia1 scf7180000300932:19948-20070 - TTAA---------G---------TA-----------------------AA------------------------------CAAATTCATTCA-------------------------------------------------------------AGTTTGGAAACCTA--TTATTATTATTATT-TATATTATTATTT------------------------TAAAAATTTTTAGTT-------------------------------TTTAATATTTAATTTTTTTTATTCTTGTTTTAATATTAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAA
droTak1 scf7180000415456:23731-23906 + ACTCGGCTAG--TG------------ACCCTGATCA----------------------------------------------AGAATATATATACTTTATGGGGTCGGAAACGCTTCATTCTAGCTGTTACATACTT---TTG-CACGAATCTAGTATACCCTTTTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACGAGT-AACGGGTAT---------------------------------------------------------------------------AAAAAT------------------------------------------------------------------------AC---------------ACATTCTAT-A----AGCT-CT-----AAAACATTTTAGGACGGAAAAGTAC---------------------------------GAACT
droEle1 scf7180000490970:314299-314380 + TAAT---------A---------TG-----------------------GA--------------------------------------------------------------------------------------------------------------------------------------AACAATTATATTT------------------------TAAAAAGTTCCTATT-------------------------------TGAAATAT--GGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTAAATTAAA-GTTTA----GATATTAAA--------------------------------------------------------------------------------TAAA
droRho1 scf7180000779753:7646-7857 - ATTG---------G---------CA-----------------------A-------------------------TATATTCAAAAACATTCAGACTTTGCAAT-----------------------------------------------------------------------TTAAGTTATTTATAACA-TA-TTTAAAATAATTTGATGTTTGTTTCTCTTAGAGAAA-----------------------------GCCTT--T-------------------GCT---G-----------------------------------TGTTCTTCTTGTAT-GTATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATATGTTAATCAGTTTATT-CT---TTTATAATATATAGG-TGGAGATGCAGCAGCTACGGCAAGCATACAATCGCTTAGTAAATCAAAT
droFic1 scf7180000454086:129886-129952 - TTGT---------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTATTAGG-TGGAAATGCAACAGCTGAGGCAGGCATACAATCGTCTTGTCAACCAGAT
droKik1 scf7180000302685:684854-685005 + TATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATATA-TATAAATATAGTT------------------------TAATAATATTTCATA-------------------------------TTTATTATACATATTTATTT------GTCAGAATAATGTTTTGTGGTGACA--TTGCTT--TCC-----------------------------------------------------------------------------AAAGGATTATTCTGACATATAAAT--------------------------------------------------------------------------ATGTATTATAAACAT-TAAATATAAATA----A---------------------------------------------------------------------TTTTT
droAna3 scaffold_13034:535974-536146 + TAAA---------A---------AA-----------------------AA------------------------------AG--------------------------------------------------------------------------------------------------------------------------------------------------TCCTCAATCGAAAAATTGGTTGCTCCGACGTTGTCTATG-----T--GTCTATGTATTTTTT---TTTGTCATGCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----TCAAGCCCAAATTTATTAGTAACTA--CA-TT----TTATTATTCCCAGG-TGGAGATGCAGCAGCTACGACATGCATATAACCGACTTATAAGTCAAAT
droBip1 scf7180000394771:12364-12570 + AGCT---------G---------TTGATGCTGATCAAGAATACTAGTATACTGCATACTA---------GTAATACTGTAGTATATATAACATATTTTATGGGGTCGGAGGTTATTCCGTCTCTATGTTACATATGTAGATTCACACGACTACAATATACCCTTGTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACGAAT-GCCGTTTAT---------------------------------------------------------------------------AAAAAG------------------------------------------------------------------------GC-----AAAAATATATTTTAGTTCTATA---AATTCTC-----ATAATATTTTA----------------------------------------------------
dp5 Unknown_group_425:5397-5482 - TAAA---------A---------TT-----------------------AA------------------------------AG-----------------------------------------------------------------------------------------------------------TTTTCTTT------------------------TAAA---------------CAAT----------------------------------------------------------------------------------------------TATCT-TGCGTTAAT---------------------------------------------------------------------------GGGCAT------------------------------------------------------------------------A------GCAAACATATATATGTATTTA----TTTT-TT-----TTGGTATTTTA----------------------------------------------------
droPer2 scaffold_6:5372755-5372848 + TTTT--CCAA--TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC--AATACTTATTTTT------------------------TAAAGAGTTTTCCCC-------------------------------TGTAATATTTGTATACTTTAGTT---TTTAAATTCTT------AAATAAAAAACCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTT
droWil2 scf2_1100000004909:1965064-1965246 - AGAC---------T---------TT-----------------------GATCAAATGCAATGCAAAATGGTCGATTTATAGCAAAATATGCATGCCTTATAAA-----------------------------------------------------------------------AAAATAGAT-TTAAATATTATTT------------------------AAA------------------------------------------------------TCTATTTTGATT---ATTAA------------AAAAATAAGATTTTAA--TTGATATTTTAGTGCTGGCCATTAA---------------------------------------------------------------------------ATCCAT------------------------------------------------------------------------TC-----ACTTCAAAGTATAG-TATCAT----AAAT-T----------------------------------------------------------------TCTCT
droVir3 scaffold_12958:599995-600197 + GCATAGCTAGATCAACCCGGCTCTTTATGCTGATCA----------------------------------------------------TATATATTTTATGGGGTCAAAGATGCTTCGCTGTGCCTGTTACATACAT---TTGCCACAACTACTTTATACGCTTT----------------------------------------------------------------------------------------------------------------------------------TAATTATTTTTCATGGGTTCAAGGTATAAAA--TTAAAATTATTAATT-TGTTTAAAT---------------------------------------------------------------------------TCACGT------------------------------------------------------------------------A------GAAGACAAACATATTTAACTT----ATAT-TT----------------------------------------------------------------TTAA
droMoj3 scaffold_6473:1699035-1699241 + GCAC---------A---------AA-----------------------ACCAATATACTC---------ATTTCA-------------------CTTT---------------------------------------------------------------------CGTGAATGAG-------TATAAAAACAA---------------------------------TTGCGACG--------------------------------------------------------------------------------------------------TAATAGAAT-TGTAAGAGTTCGCTCAGAGAGCAGAGGCTATATTATTGCATAGATAAGTCGCGTGTGTGTGTGTACACGGTTACTCAATCATATATACAT------------------------------------------------------------------------GC-----ATACATATACATATGTCTGTCTGT----C-TG-----CTGAG-TTATTTG-TGAAAATGC----------------------------------------
droGri2 scaffold_14822:467154-467241 + TATA---------T---------AT-----------------------TT-AATTATTTC---------TAATTA-------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCCGCATCAGG-TTGAGCTGCAGCAGCTGAGGCAGGCTTACAATCGTCTGGTGAACCAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCAC---------G---------TG-----------------------AACCATATACAA---------GTGACA-------------------CCTT---------------------------------------------------------------------CTTTACTAGTAATATA-TATAAATATATTT------------------------TAAAAAGTTTCGATG-------------------------------TGAACTATTTAGCTATTTTAGCT---GTTATAGTTTTGCCTTGAAACAAAAGACTTCAG--TTGGACTTTCTGTGT-GGCGTATAT---------------------------------------------------------------------------ATACAT------------------------------------------------------------------------GC-----ACAAGCATACATATGTTATTA----ATTT-TT-----TTAATCTTTTAGG-TGGAAATGCAGCAGCTAAGGCATGCATACAACCGCCTGGTAAACCAAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................TGGACTTTCTGTGT-GGCGTATAT---------------------------------------------------------------------------A........................................................................................................................................................................................2416.00600000005010000000
..................................................................................................................................................................................................................................................................................................................................TCAG--TTGGACTTTCTGTGT-GGCGTA.......................................................................................................................................................................................................................................................................2514.00400000011110000000
.............................................................................................................................................................................................................................................................................................................TTTGCCTTGAAACAAAAGACTTCAG--TTGG.........................................................................................................................................................................................................................................................................................2913.00300000021000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGCAGCTAAGGCATGC........................2112.00200000000000200000
...................................................................................................................................................................................................................................................................................................................TTGAAACAAAAGACTTCAG--TTGGACTT.....................................................................................................................................................................................................................................................................................2712.00200000001010000000
.................................................................................................................................................................................................................................................................................................................................TTCAG--TTGGACTTTCTGTGT-GGCGT........................................................................................................................................................................................................................................................................2512.00200000001010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGCATGCATACAACCGCCTGGTA........2612.00200000000000002000
....................................................................................................................................................................................................................................................................................................................TGAAACAAAAGACTTCAG--TTGGACTT.....................................................................................................................................................................................................................................................................................2612.00200000000110000000
..............................................................................................................................................................................................................................................................................................................................GACTTCAG--TTGGACTTTCTGTGT-GGCGT........................................................................................................................................................................................................................................................................2811.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGCATGCATACAACC................1811.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGCAGCAGCTAAGGC............................1911.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................TTCTGTGT-GGCGTATAT---------------------------------------------------------------------------ATACAT------------------------------------------------------------------------GC-----ACA.................................................................................................2811.00100000000100000000
.............................................................................................................................................................................................................................TAAAAAGTTTCGATG-------------------------------TGAACT....................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................TTCAG--TTGGACTTTCTGTGT-GGCG.........................................................................................................................................................................................................................................................................2411.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................AAAGACTTCAG--TTGGACTTTCTGTGT-.............................................................................................................................................................................................................................................................................2611.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTA----ATTT-TT-----TTAATCTTTTAGG-TGGAA............................................2911.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................TGGACTTTCTGTGT-GGCGTATAT---------------------------------------------------------------------------AT.......................................................................................................................................................................................2511.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................AAAAGACTTCAG--TTGGACTTTCTGTG...............................................................................................................................................................................................................................................................................2611.00100000010000000000
...............................................................................................................................................................................................................................................................................................................TGCCTTGAAACAAAAGACTTCAG--TTGGA........................................................................................................................................................................................................................................................................................2811.00100000001000000000
................................................................................................................................................................................................................................................................................................................................CTTCAG--TTGGACTTTCTGTGT-GGC..........................................................................................................................................................................................................................................................................2411.00100100000000000000
.............................................................................................................................................................................................................................................................................................................TTTGCCTTGAAACAAAAGACTTCAG--T............................................................................................................................................................................................................................................................................................2611.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................GACTTCAG--TTGGACTTTCTGTGT-GGC..........................................................................................................................................................................................................................................................................2611.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................TGGACTTTCTGTGT-GGCGTATAT---------------------------------------------------------------------------ATAC.....................................................................................................................................................................................2711.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................CAG--TTGGACTTTCTGTGT-GGC..........................................................................................................................................................................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATGTTATTA----ATTT-TT-----TTAATCT........................................................2711.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGCATGCATACAACCGCCTGGT.........2511.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................TTCTGTGT-GGCGTATAT---------------------------------------------------------------------------ATA......................................................................................................................................................................................2011.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCAGCTAAGGCATGC........................2011.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACAACCGCCTGGTAAACCAAA.2511.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................AGACTTCAG--TTGGACTTTCTGTGT-.............................................................................................................................................................................................................................................................................2411.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................TTTCTGTGT-GGCGTATAT---------------------------------------------------------------------------ATACA....................................................................................................................................................................................2311.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTTTAGG-TGGAAATGCAGCAGC..................................2611.00100000000001000000
...............................................................................................................................................................................................ATATTT------------------------TAAAAAGTTTCGATG-------------------------------TGAAC.....................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................CAG--TTGGACTTTCTGTGT-GGCGTA.......................................................................................................................................................................................................................................................................2411.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................CAG--TTGGACTTTCTGTGT-GG...........................................................................................................................................................................................................................................................................2011.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGCATGCATACAACCGCCTGGA.........2511.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................TTCAG--TTGGACTTTCTGTGT-GGCGTA.......................................................................................................................................................................................................................................................................2611.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................CAAAAGACTTCAG--TTGGACT......................................................................................................................................................................................................................................................................................2011.00101000000000000000
....................................................................................................................................................................................................................................................................................................................TGAAACAAAAGACTTCAG--TTGGACTTTC...................................................................................................................................................................................................................................................................................2811.00100000000010000000
...........................................................................................................................................................................................................................................................................TGAACTATTTAGCTATTTTAGCT---A...............................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGG-TGGAAATGCAGCAGC..................................2211.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................AGACTTCAG--TTGGACTTTCTGTGC-.............................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
GCAC---------G---------TG-----------------------AACCATATACAA---------GTGACA-------------------CCTT---------------------------------------------------------------------CTTTACTAGTAATATA-TATAAATATATTT------------------------TAAAAAGTTTCGATG-------------------------------TGAACTATTTAGCTATTTTAGCT---ATTATAGTTTTGCCTTGAAACAAAAGACTTCAT--TTGGACTTTCTGTGT-GGCGTATAT---------------------------------------------------------------------------ATACAT------------------------------------------------------------------------GC-----ACAAGCATACATATGTTATTA----ATTT-TT-----GTAATCTTTTAGG-TGGAAATGCAGCAACTAAGGCATGCATACAACCGCCTGGTAAACCAAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATACAACCGCCTGGTAAACCAAAT2811.0010010
GCAC---------G---------TG-----------------------AACCATATACAA---------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAACCGCCTGGTAAACCAA..2211.0010010
dm3
GCAA---------G---------TG-----------------------AACCATATACAA---------GTGACA-------------------CCTTTAGGGGTCGAATTTTTC------------------------------------TTAGTATGCTCTCTTACTGTACTAGTAAAATT-TATAAATGTTTTT------------------------CAACAAGTTTCACTT-------------------------------TGAACTATTTAGTTATTTTAGCT---ATTAACGTTTAGCCTTGAAAGAAAACACTGCAA--TTGGGATTTCTGGGT-GGCGCATAC---------------------------------------------------------------------------ATACATACC---------------------------------------------------------------AAAAATTC-----ACAAGTATACATATGTTAATCATTA--TT-TT-----TAAATTTTTTAGG-TGGAAATGCAGCAGCTAAGGCAGGCATACAACCGCCTGGTAAATCAAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCTAAGGCAGGCATACAAC.................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACAACCGCCTGGTAAATCA...2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TCTGGGT-GGCGCATAC---------------------------------------------------------------------------ATAC.....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TAACGTTTAGCCTTGAAAGAA.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGCAGCAGCTAAGG.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTAAGGCAGGCATACAACCGCC.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
.........................................................CAA---------GTGACA-------------------CCTTTAGGGGTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CT---ATTAACGTTTAGCCTTGA..............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................AAAGAAAACACTGCAA--TTGGG........................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG-TGGAAATGCAGCAGCT.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGCAGCAGCTAAGGC............................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CAA--TTGGGATTTCTGGGT-GGC..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCTAAGGCAGGCATACAACCGC..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGGCAGGCATACAACCGC..............2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A--TTGGGATTTCTGGGT-GGCGC........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAATGCAGCAGCTAAGGCA...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTAAGGCAGGCATA.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAATGCAGCAGCTAAGGCAGGC........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CCATATACAA---------GTGACA-------------------CCTTTAGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAACCGCCTGGTAAATCAAAT2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCAGCTAAGGCAGGCATAC....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGGCAGGCATACAACCGC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GCAA--TTGGGATTTCTGGGT-GGCGCA.......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCTAAGGCAGGCA.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG-TGGAAATGCAGCAGCTAAGGCAGGC........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG-TGGAAATGCAGCAGCTAAGGCAG..........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTAAGGCAGGCA.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AA---------GTGACA-------------------CCTTTAGGGGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droEre2
ACCT---------G---------TT-----------------------A---------------------------------------------------------------------------------CATACTT---TTA-AAGGAACCTAGTATACTCTTTCACACTAAGAGTAACATT-TATAAAAACAATC------------------------TAATA-GCTTAGATT-----------------------TGCCAC------------------T-AAGCT---GTTAACTTTTAGCCTTGAAACAAAACACCTCAA--A-----------GGC-AGCGCAAA---------------------ATATAAATACAAAT-----------------------------------------ATAAATACTTGGAAATGCAAAACTCTTCAAAAGGTTATTCCCAATAGTTTTAAAGCAGAGACTAGTTTGTATACAAATATAC-ATATG----TACATATAGTAAACATTTTTTT-GT-----TGCATATTTTAGG-TCGAGATGCAGCAGCTACGGCAAGCGTACAACCGCCTTGTAAATCAAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAGCAGCTACGGCAAGC........................2311.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTACGGCAAGCGTAC....................1911.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTACGGCAAGCGTA.....................2011.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TCGAGATGCAGCAGCTACGGCAAGC........................2611.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGGCAAGCGTACAACCGCCTT...........2411.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCTACGGCAAGCGTACAACC................2411.0011000000
droYak3
AGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATT-CATAACA-T-TTC------------------------TAACAAGTTTTGATG----------------------TTGCCAC------------------TAGGCCT---ATTAACTTTTAGCTTTGAAACAAAAGGCTTCAAAGCTAGGC--------T-TGCGTAGAT---------------------------------------------------------------------------ATACATACTTGGATATGAAAAACACTTGAAAAGGTTCTTCCGAATATTGTTGAAGCAGAGACTTGTATATATACAAATAT---------ACATACATATGTTAATCAAT----T-TTTCATTTGTATATTTTAGG-TGGAGATGCAGCAGCTTCGGCAGGCATACAACCGCCTTGTAAATCAAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATGCAGCAGCTTCGGCAGGC........................2412.00200200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTTCTTCCGAATATTGTTGAAGC.................................................................................................................................2611.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGGAGATGCAGCAGCTTCGGCAGGC........................2611.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TGGAGATGCAGCAGCTTCGGCAGGC........................2711.00101000000000
droEug1
CTTA---------T--------------AATAGTCATAAATATTATTTTAAATAAACTAA---------AC----------------------------------------------------------------------------------------------------------------------AA-TG-TTT-----------------------TAAAA--------------TATT-------------------------------TTCCATTTTTTACTT---ATTATAATGTCTATTTAAAACCAAAGACTTCTT--CCAGATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTSizeHit CountTotal NormTotal
No Reads
droBia1
TTAA---------G---------TA-----------------------AA------------------------------CAAATTCATTCA-------------------------------------------------------------AGTTTGGAAACCTA--TTATTATTATTATT-TATATTATTATTT------------------------TAAAAATTTTTAGTT-------------------------------TTTAATATTTAATTTTTTTTATTCTTGTTTTAATATTAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAASizeHit CountTotal NormTotal
No Reads
droTak1
ACTCGGCTAG--TG------------ACCCTGATCA----------------------------------------------AGAATATATATACTTTATGGGGTCGGAAACGCTTCATTCTAGCTGTTACATACTT---TTG-CACGAATCTAGTATACCCTTTTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACGAGT-AACGGGTAT---------------------------------------------------------------------------AAAAAT------------------------------------------------------------------------AC---------------ACATTCTAT-A----AGCT-CT-----AAAACATTTTAGGACGGAAAAGTAC---------------------------------GAACTSizeHit CountTotal NormTotal
No Reads
droEle1
TAAT---------A---------TG-----------------------GA--------------------------------------------------------------------------------------------------------------------------------------AACAATTATATTT------------------------TAAAAAGTTCCTATT-------------------------------TGAAATAT--GGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTAAATTAAA-GTTTA----GATATTAAA--------------------------------------------------------------------------------TAAASizeHit CountTotal NormTotal
No Reads
droRho1
ATTG---------G---------CA-----------------------A-------------------------TATATTCAAAAACATTCAGACTTTGCAAT-----------------------------------------------------------------------TTAAGTTATTTATAACA-TA-TTTAAAATAATTTGATGTTTGTTTCTCTTAGAGAAA-----------------------------GCCTT--T-------------------GCT---G-----------------------------------TGTTCTTCTTGTAT-GTATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATATGTTAATCAGTTTATT-CT---TTTATAATATATAGG-TGGAGATGCAGCAGCTACGGCAAGCATACAATCGCTTAGTAAATCAAATSizeHit CountTotal NormTotal
No Reads
droFic1
TTGT---------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTATTAGG-TGGAAATGCAACAGCTGAGGCAGGCATACAATCGTCTTGTCAACCAGATSizeHit CountTotal NormTotal
No Reads
droKik1
TATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATATA-TATAAATATAGTT------------------------TAATAATATTTCATA-------------------------------TTTATTATACATATTTATTT------GTCAGAATAATGTTTTGTGGTGACA--TTGCTT--TCC-----------------------------------------------------------------------------AAAGGATTATTCTGACATATAAAT--------------------------------------------------------------------------ATGTATTATAAACAT-TAAATATAAATA----A---------------------------------------------------------------------TTTTTSizeHit CountTotal NormTotal
No Reads
droAna3
TAAA---------A---------AA-----------------------AA------------------------------AG--------------------------------------------------------------------------------------------------------------------------------------------------TCCTCAATCGAAAAATTGGTTGCTCCGACGTTGTCTATG-----T--GTCTATGTATTTTTT---TTTGTCATGCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----TCAAGCCCAAATTTATTAGTAACTA--CA-TT----TTATTATTCCCAGG-TGGAGATGCAGCAGCTACGACATGCATATAACCGACTTATAAGTCAAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATATAACCGACTTATAAGT.....2311.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATAACCGACTTATAAGC.....2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAACCGACTTATAAGT.....1911.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGCAGCTACGACATGC........................2120.501010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGGAGATGCAGCAGCTACGACA...........................2320.501010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGCAGCTACGACAT..........................1920.501100000
droBip1
AGCT---------G---------TTGATGCTGATCAAGAATACTAGTATACTGCATACTA---------GTAATACTGTAGTATATATAACATATTTTATGGGGTCGGAGGTTATTCCGTCTCTATGTTACATATGTAGATTCACACGACTACAATATACCCTTGTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACGAAT-GCCGTTTAT---------------------------------------------------------------------------AAAAAG------------------------------------------------------------------------GC-----AAAAATATATTTTAGTTCTATA---AATTCTC-----ATAATATTTTA----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TAAA---------A---------TT-----------------------AA------------------------------AG-----------------------------------------------------------------------------------------------------------TTTTCTTT------------------------TAAA---------------CAAT----------------------------------------------------------------------------------------------TATCT-TGCGTTAAT---------------------------------------------------------------------------GGGCAT------------------------------------------------------------------------A------GCAAACATATATATGTATTTA----TTTT-TT-----TTGGTATTTTA----------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTTT--CCAA--TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC--AATACTTATTTTT------------------------TAAAGAGTTTTCCCC-------------------------------TGTAATATTTGTATACTTTAGTT---TTTAAATTCTT------AAATAAAAAACCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGAC---------T---------TT-----------------------GATCAAATGCAATGCAAAATGGTCGATTTATAGCAAAATATGCATGCCTTATAAA-----------------------------------------------------------------------AAAATAGAT-TTAAATATTATTT------------------------AAA------------------------------------------------------TCTATTTTGATT---ATTAA------------AAAAATAAGATTTTAA--TTGATATTTTAGTGCTGGCCATTAA---------------------------------------------------------------------------ATCCAT------------------------------------------------------------------------TC-----ACTTCAAAGTATAG-TATCAT----AAAT-T----------------------------------------------------------------TCTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GCATAGCTAGATCAACCCGGCTCTTTATGCTGATCA----------------------------------------------------TATATATTTTATGGGGTCAAAGATGCTTCGCTGTGCCTGTTACATACAT---TTGCCACAACTACTTTATACGCTTT----------------------------------------------------------------------------------------------------------------------------------TAATTATTTTTCATGGGTTCAAGGTATAAAA--TTAAAATTATTAATT-TGTTTAAAT---------------------------------------------------------------------------TCACGT------------------------------------------------------------------------A------GAAGACAAACATATTTAACTT----ATAT-TT----------------------------------------------------------------TTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................TACAT---TTGCCACAACTACTTTATACGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................TATGGGGTCAAAGATGCTTCGCTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TAATTATTTTTCATGGGTTCAAGGTA....................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TATTTTTCATGGGTTCAAGGTATAAAA--T............................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
.........GATCAACCCGGCTCTTTATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TATTTTTCATGGGTTCAAGGT.....................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................ACTACTTTATACGCTTT----------------------------------------------------------------------------------------------------------------------------------TAA...........................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................TATTTTATGGGGTCAAAGATGCTTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................TACAT---TTGCCACAACTACTTTATACGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCAC---------A---------AA-----------------------ACCAATATACTC---------ATTTCA-------------------CTTT---------------------------------------------------------------------CGTGAATGAG-------TATAAAAACAA---------------------------------TTGCGACG--------------------------------------------------------------------------------------------------TAATAGAAT-TGTAAGAGTTCGCTCAGAGAGCAGAGGCTATATTATTGCATAGATAAGTCGCGTGTGTGTGTGTACACGGTTACTCAATCATATATACAT------------------------------------------------------------------------GC-----ATACATATACATATGTCTGTCTGT----C-TG-----CTGAG-TTATTTG-TGAAAATGC----------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................ATACTC---------ATTTCA-------------------CTTT---------------------------------------------------------------------CGTGAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.255500000
.................................................CCAATATACTC---------ATTTCA-------------------CTTT---------------------------------------------------------------------CGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
...................................................AATATACTC---------ATTTCA-------------------CTTT---------------------------------------------------------------------CGTGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
droGri2
TATA---------T---------AT-----------------------TT-AATTATTTC---------TAATTA-------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCCGCATCAGG-TTGAGCTGCAGCAGCTGAGGCAGGCTTACAATCGTCTGGTGAACCAAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:43 AM