ID:

dsi_7852

 Coordinate:

3l:6608433-6608582 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAACAACAACAACAGCAGCAGCAACAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCCAATGTTCCTAGGAAGGCTGGCGGAAATCCTACTCACAGAGCGGGAACCAGACACAAAACAGATACATTGAACTCACTTGCATACCAAAAGCATCTTTGATTTATGTTTTCAATTGATCTTTTGAGTTGCCGTAATTTTATAATTTGTTGAGCCAAAATACTCTTCGCTTACAATTTGTGTTGCTGCAGT
***************************************************************************************************************************....................((((((((.(((.((((.........))))..))))))))).))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 O002
Head
 M053
female body
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................TACATTGAACTCACTTGCATACCAAA..................................................................................................... 26 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.....ACAACAACAGCAGCAGCAAC................................................................................................................................................................................................................................. 20 0 20 2.60 52 0 0 52 0 0 0 0 0 0 0 0 0
.........................................................................................................................GATACATTGAACTCACTTGCATACCAAA..................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GAACTCACTTGCATACCAAAAGCATCTTT............................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................AGATACATTGAACTCACTTGC............................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................AAACAGATACATTGAACTCACTT............................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GATACATTGAACTCACTTGCATACCAA...................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATTTTATAATTTGTTGAGCC.................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ACACAAAACAGATACATTGAACTCACT................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATTGAACTCTCTTGCATACCAA...................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................TATGTTTTCAATTGTTCTTTTGT................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................TACTCACAGAGCGGGAATCAGAAACA...................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................AATTGATCTTTTGAGT............................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................CTAGGAAGGCTGGCGGAAATCCTACT............................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAACAGATACATTGAACTC................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGAACTCACTTGCATACCAAAAGCATCA.............................................................................................. 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................CTAGGAAGGCTGGCGGAAATC................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TTCAATTGATGTTTTGAGTTGCCGTA........................................................ 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................AAACAGATACATTGAACTCACTTGC............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTGGGTTGTCGTTATTTTATA................................................ 22 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................GTAGCCGTGATTTTATAAATT............................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................TATGATCCTAGGTAGGCTG.......................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................TATGATCCTAGGTAGGCT........................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
...CAACAACAACAGCAGCAGCAACA................................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................AACAAAACAGATACATTA........................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................CTCAGACGGTTAGAGCGC.............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GTTGTTGTTGTTGTCGTCGTCGTTGTTAGCGTCGTCGCGTGTGCGTCTGCCAATCGTGCGGTTACAAGGATCCTTCCGACCGCCTTTAGGATGAGTGTCTCGCCCTTGGTCTGTGTTTTGTCTATGTAACTTGAGTGAACGTATGGTTTTCGTAGAAACTAAATACAAAAGTTAACTAGAAAACTCAACGGCATTAAAATATTAAACAACTCGGTTTTATGAGAAGCGAATGTTAAACACAACGACGTCA
***************************************************************....................((((((((.(((.((((.........))))..))))))))).))*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 SRR902008
ovaries
..............................................................................ACCGCCTTTAGGATGAGTGTCTCG.................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................ATGTAACTTGAGTGAACGTATGGTTTT.................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................AGAAACTAAATACAAAAGTTAACTACAA..................................................................... 28 1 1 1.00 1 1 0 0 0 0
................................................................................................................TTGTTTTGTCTATGTAACTTG..................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................................TATGGCTTTCGTAGCAAC........................................................................................... 18 2 6 0.33 2 0 0 2 0 0
..........TTGTCGTCGTCGTTGT................................................................................................................................................................................................................................ 16 0 20 0.25 5 0 5 0 0 0
...GTTGTTGTTGTCGTCGTCGTT.................................................................................................................................................................................................................................. 21 0 20 0.25 5 0 5 0 0 0
.....................................................................................................................................................TCGTAGAAACTGAATGCA................................................................................... 18 2 5 0.20 1 0 0 0 1 0
...GTTGTTGTTGTCGTCGTCGTTGT................................................................................................................................................................................................................................ 23 0 20 0.20 4 0 4 0 0 0
..............CGTCTTCGTTGTTAGAGTCG........................................................................................................................................................................................................................ 20 2 9 0.11 1 0 0 0 0 1
......GTTGTTGTCGTCGTCGTTG................................................................................................................................................................................................................................. 19 0 20 0.10 2 0 2 0 0 0
.....TGTTGTTGTCGTCGTCGTTG................................................................................................................................................................................................................................. 20 0 20 0.10 2 0 2 0 0 0
...GTTGTTGTTGTCGTCGTCGTTG................................................................................................................................................................................................................................. 22 0 20 0.10 2 0 2 0 0 0
.....................................................................................................................................................................................................................GGTTTATGAGAAGCG...................... 15 1 13 0.08 1 0 1 0 0 0
..TGTTGTTGTTGTCGTCGTCGTTGT................................................................................................................................................................................................................................ 24 0 19 0.05 1 0 1 0 0 0
..TGTTGTTGTTGTCGTCGTCGT................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
.....TGTTGTTGTCGTCGTCGTTGT................................................................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0
..TGTTGTTGTTGTCGTCGTCGTT.................................................................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
........TGTTGTCGTCGTCGTTGTT............................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:6608383-6608632 - dsi_7852 CAACAA-CA---ACAACAGC---AGCAGCA------------ACAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAGGAAGG-----------CTGGCGGAA-----------A-------TCCT------------------------------------------------------------------------ACTCACAG---AGCGGGAAC-----------------CAGACACAAA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAA--TTTTAT----------AATTT-GTTGA--GCCAA---AATACTCTTCGC-TTACAATTTGTGTTG------CT---GCAGT----------------------
droSec2 scaffold_2:6670172-6670433 - CAGCAA-CAACAACAGCAGCAACAACAGCA------------GCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAGGAAGG-----------CTGGCGGAC-----------A-------TCCT------------------------------------------------------------------------ACTCACAG---AGCGGAAAT-----------------CAGAAACAAA--------------------------------A----CATACATTGATACA----T-TGAA-----CTCACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTC---------------TGAGTTGCCGTAA--TTTTAT----------AATTT-GTTGA--GCCAA---AATACTCTTCGC-TTACAATTTGTGTTG------CT---GCAGT----------------------
dm3 chr3L:6733552-6733810 - CAGCAG-CA---ACAACA---------GCA------------GCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAGGAAGG-----------CTGGCGGACGCGACGGCCACA---TCCATTCT------------------------------------------------------------------------ACTCACAG---AGCGCGAAT-----------------CAGAAACAAG--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATTTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAA--TTTTAT----------AATTT-CTTGA--GCCAA---AATACTCTTCGC-TTACAATTTCTGTTG------CT---GCAGT----------------------
droEre2 scaffold_4784:4630417-4630684 + CAACAA-CA---ACAGCAGC---AGCAGCA------------GCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGTACGAGACGGCCACA---TCCATCCT------------------------------------------------------------------------ACTCACAG---AACAGGAAG-----------------CAGAAACAAA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGCAT--AACAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAC--TTTTAT----------AATTT-GTTAA--GCGAAGCGAAGTGTATTCGC-TTACAATTTGTGTTG------CT---GCAGT----------------------
droYak3 3L:7318482-7318749 - CAGCAA-CA---GCAGCAGCATCAACAGCA------------GCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGCAAGCGACGGCCACA---TCCATCCT------------------------------------------------------------------------ACTCACAG---AACAGGAAG-----------------CAGAAACAAA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGCAT--ACCGAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAC--ATTTAT----------AATTT-GTTGA--GCCAA---AATACTCTTCGC-TTACAATTTGCGTTG------CT---GCAGT----------------------
droEug1 scf7180000409711:4298531-4298796 - CAGCAG-CA---ACAGCAAC---AGCAGCA------------GCAATCCCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGGAAGCGTCGGCCACA---T----CTC------------------------------------------------------------------------ACGCATAC---AACAGGAAC-----------------CAAATTCGAA--------------------------------A----CAG------ATACA----T-CCAA---CACACACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCTGTAC--TTTTAT----------GATTT-GTTGA--GCCAA---AACACTTTTTGC-TTACAACTTGTGTTG------CT---GCAGTAA-------------------A
droBia1 scf7180000302193:4293754-4293992 - CAGCAA-CA---ACAACAGC---AGCAGCA------------GCAATCTCAGCAGCGAACACGCAGACGGTTAGCACGCC-AATGCTC--------------------------CTAAGAGGG-----------TCGACAGAAGCGACGGCCACA---T----CCCA---------------------------------------------------------------------C-ATCCACA----AACAGGAAC-----------------CAACACCGAA--------------------------------A----CAG------AAACA----T-CCAA-----CACATTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAA--CTTTAT----------GATTT-GCTGA--GTG----------------------AATTTGTGTTG------CC------------------------------
droTak1 scf7180000415809:683293-683565 - CAACAG-CA---TCAACA------ACAGCA------------GCAATCCCTGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGGAAGCGACGGCCACA---T----CCCA---------------------------------------------------------------------CATCCCACAA---AACAGGAAA-----------------CAAAACCGAA--------------------------------A----CAG------ATACA----T-CCAACAACACACATTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCATCA--TTTTAT-------T-TGATTT-GTTGA--GCCAACAACACACTATTCGC-TTACAATTTGTGTTG------CT---GCAGTAA--------------------
droEle1 scf7180000491193:1584488-1584762 - CAACAA-CA---GCAACAGC---AGCAACAACAACAGCAGCAGCAATCCCAACAGCGTACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAAAAGC-----------CTGGCGGAAGCGACGGCCACA---T----CCC------------------------------------------------------------------------GCCCATAT---ACCTGGAACCAAAA------T-----CGAAACCGAA--------------------------------A----CAG------ATCCA----T-C-AA-----CACACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ACGTT------TCAATTGATC-TTT---------------TGAGTTGTCGTAA---TTTAT----------GATTT-GTTGA--ACCAA----ACAATTTTCGC-TTGCAATTTGTTTTG------CC---GACGT----------------------
droRho1 scf7180000779207:60212-60471 - CAGCAA-CA---ACAACAGC---AGCAGCA------------GCAATCCCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTCGCGGATTTGACGGCCACA---T----CCC------------------------------------------------------------------------ACCCATAC---ATCAGGAAC-----------------CGAAACCGAA--------------------------------A----CAG------ATACA----T-CCAA-----CACACTTGCAT--ACAAAAAGCAT---------------CTTTGATTT------------AAATT-----TTTAATTGATC-TTT---------------TGAGTTGCCGTAA--TTTTAT----------GATTT-CTTGA--AACAA----ACACTTTTCGC-TTAAAATTTGTGTTG------CT---GCAGT----------------------
droFic1 scf7180000453929:863960-864231 + CAACAA-CAACTACAGCAGC---AGCAGCAACAACAGCAGCAGCAATCGCAGCAGCGCACACGCAGACGGTTAGCTCGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGGAAGCGACGGCCACA---T----CCC------------------------------------------------------------------------ACCCATAC---AGCAGAAAC-----------------CGA-----GA--------------------------------A----CAG------ATACA----T-TCAC---ACTTCACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ACGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCATAA--TTTTAT----------GATTT-CTTGA--GCCAA----ACACTTTTCGC-TTACAATTTGTGTTG------CT---GCAGT----------------------
droKik1 scf7180000302510:455447-455659 - CAGCAA-CA---ACAGCAGC---AACAGCA------------ACAACAACAGCAGCGCACACGGAGACGGTTAGCACGGGCCGCATTTTAAGC-------------------------GAAAC-----------CTGGCGAA-ACAACAGCCTCT---T----C-A------------------------------------------------------------------------ACTC-----------------------------------------------------------------------------------------ATCCA----C-CAAA-----AACACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ACGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTTC--AATTT-GT-----TATGATTT----------------------CTGCGC-TTGCAATTTGAGT----------------------------------------
droAna3 scaffold_13337:20179390-20179631 + CAACAG-CA---ACAGCAG------------------------------ACCCAACGCACACGCAGACGGTTAGATCGAACTAAATTC---------------------------TAA-CCGC-----------CTGGCGGAT-----------A-------GCTC------------------------------------------------------------------------ATCCACAC---AGCAG-AACC--AG------A-----CACAACCGAA--------------------------------A----CAGACATCCAGACA----T-CCAC-----CACACTCGCAT--ACCGAAAGCAT---------------CTTTGAGTT------------ACGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAT--ACTTAT----------AATTT-GTTGA--GCCCG----ACACTTTTCGC-TTGCCATTTGTGTTG------CG---TCAGC----------------------
droBip1 scf7180000396529:233467-233682 - ------------------------------------------------GTCGCAGCGCACACGCAGACGGTTAGAACGAACTAAATTC---------------------------TAA-CCGC-----------CTGGCGGAC-----------A-------CCTC------------------------------------------------------------------------ATCCACAC---AGCCGAAAC-----------------C--------A--------------------------------A----CCG------ACACA----T-CCAC-----TACACTCGCAT--ACCGAAAGCAT---------------CTTTGAGTT------------ACGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTATATATTTAT----------AATTT-GTTGA--GCCCG----ACACTTTTCGC-TTGCCATTTGTGTTG------CGTCAGCAGT----------------------
dp5 XR_group8:5194921-5195130 + AACCAG-------------------------------------------AACCAGCGCACACGCAGACGGTTAGAACGCCCAGTATTA--------------------------TAAAGAAAACAGAACAGAAG-------------------------------------------------------------------------------------------------------------------------AACC--TGGAGGACACGCACCA-----GAAACAGAAA-------------------------A----CA-------TGCAATACAT-T--A-----CTCTCT---------------CAT---------------CCTTGATTT-------------CGTTAATTCGTTAATTGATC-GT----------------TGAGTTGCCTTTA--ATTTTC----------ATTTT-GTTAA--GAAAA-------TTATACGTTTTGCAATCAGAATTC------A--------T----------------------
droPer2 scaffold_38:496885-497094 - AACCAG-------------------------------------------AACCAGCGCACACGCAGACGGTTAGAACGCCCAGTATTA--------------------------TAAAGAAAACAGAACAGAAG-------------------------------------------------------------------------------------------------------------------------AACC--TGGAGGACACGCACCA-----GAAACAGAAA-------------------------A----CA-------TGCAATACAT-T--A-----CTCTCT---------------CAT---------------CCTTGATTT-------------CGTTAATTCGTTAATTGATC-GT----------------TGAGTTGCCTTTA--ATTTTC----------ATTTT-GTTAA--GAAAA-------TTATACGTTTTGCAATCAGAATTC------A--------T----------------------
droWil2 scf2_1100000004510:2371470-2371697 + CAACAA-CA---GCAGCAGC---AACAGTAACA---------AC-ATTTCAGCTACAAAAGGGTCGACGACTTTTGCGCC-CGCATTGAAGGCAGAGGGACGTCTATAAGGAAACTGAGAAGG-----------CTAAAGGAGGAGGTAG----------------------------------------------------------------------------------------------AG---AAGGAGGAG-----------------CATGA-----------GGACTGCAGCTGGTCAATGGCATAAAG----CAA------ATAAA----T-GGAA-----ATTGTT---------TAAAGTTAG---------------CTTTGGTTT------------ATGGC-----CTTAGTCGTTC-ATG---------------CTAATTGC--------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:1079588-1079923 - CA-------------------------------------------------GCAGCGCTCACGCAGACGGTTAGCACGTCCAGTATTATAAGCAGAGAGCCA----------------GAGAG-----------AGGGCGGAC-----------AGCAT----TTCACAATCATA-T--ATCACACATTGAGAAC--AAC-----GACAACAACAACAA-CAACAACCACAACAAA-------C-A---CACAGACAA-----------------CAACAACA-A--------------------------------A----CAG------AACAA----TTCAAG-----CACACGCACATCTATCTAAAGCATATTTTGTTTTTTTTTTTTTTTTTTTTAAAAAAGTTGCTGTT-----TAA-TTTGATTTAC-AAATTGATTTGTTTTTCTACTCTTTTTA--ATTTTC-----A----ATTGT-TTTCA--CTTAA----ACAAAATTTGC-TTGCAATTTGTGTTTGAAGAATT---GTCAT----------------------
droMoj3 scaffold_6680:202603-202908 + CGAGTT-TG---GCACCGCC---AGCGG-------------------TGCAGCAACGCTCACGCAGACGGTTAGCACGTCCAGTATTATAAACAG-----------------------AGCAA-----------CAAGCGGAC-----------AGCATCTATCAC--AATCATAAACAACCACA----------------------------CAACAA-CAACAACCAAAACA-A-------T-A---CACAGACAA-----------------CAACAACA-A--------------------------------ACAGCCAG------AACTA----T-CAAG-----CACACGCACAT--CC---AAGCAT---------------ATTTTGTTT---CAAAAGCCGCTGTT-----TAAGTTTGATT-ATT---------------GAAATTGATTTTG--TTTT-CATTTCGATTTGTTTTACTTGAAAGACAA---CAAACAAGTTGC-TTAAAGAA-TTGTCA------TT---GAAAC----------------------
droGri2 scaffold_15110:2228633-2228917 - CAACAAGCA--GACATCAG-----ACAGCA------------GCA------------------------------------------------------------------------------------------AAGCGGAT-----------ACCAT----TTCACAATCACA-TTAACCACACATTGAGAACTCAACTCACTCAGAACAACAAGAAGCGACAGCAAAGAAACAC-ACTCAGACAACAACAGAAAC-----------------CACAGAAACA--------------------------------ACAGCAAC------AATTA----T-CCAA---AACACACTCACAT--CTCAAAAGCAT---------------ACTTAAGTT------------GAGTT-----AACAATTTAAT-TTC-----------TTT-TGATTTGTT--TG--TTTT------------GTTTTACTTAA--ACG---------A------------AATTTGCTTGT------TT---GAAAAAAAAGAAAAGAGAAGAACAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAACAA-CA---ACAACAGC---AGCAGCA------------ACAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAGGAAGG-----------CTGGCGGAA-----------A-------TCCT------------------------------------------------------------------------ACTCACAG---AGCGGGAAC-----------------CAGACACAAA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAA--TTTTAT----------AATTT-GTTGA--GCCAA---AATACTCTTCGC-TTACAATTTGTGTTG------CT---GCAGT----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................TACA----T-TGAA-----CTCACTTGCAT--ACCAAA.......................................................................................................................................................................................................2613.00300300000000000000
.....A-CA---ACAACAGC---AGCAGCA------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20202.6052000005200000000000
....................................................................................................................................................................................................................................................................................................................................G------ATACA----T-TGAA-----CTCACTTGCAT--ACCAAA.......................................................................................................................................................................................................2812.00201100000000000000
.......................................................................................................................................................................................................................................................................................................................................................GAA-----CTCACTTGCAT--ACCAAAAGCAT---------------CTTT...............................................................................................................................................................................2911.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................AG------ATACA----T-TGAA-----CTCACTTGC.................................................................................................................................................................................................................2111.00100000000000010000
...........................................................................................................................................................................................................................................................................................AA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTT...................................................................................................................................................................................................................2311.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................G------ATACA----T-TGAA-----CTCACTTGCAT--ACCAA........................................................................................................................................................................................................2711.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TTTTAT----------AATTT-GTTGA--GCC.......................................................................2011.00101000000000000000
......................................................................................................................................................................................................................................................................................ACACAAA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACT....................................................................................................................................................................................................................2711.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATC-TTT---------------TGAGT.................................................................................................................1611.00100000000001000000
..................................................................................................................CTAGGAAGG-----------CTGGCGGAA-----------A-------TCCT------------------------------------------------------------------------ACT........................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........................................................................................................................................................................................................................................................................................AA--------------------------------A----CAG------ATACA----T-TGAA-----CTC.......................................................................................................................................................................................................................1911.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................TGAA-----CTCACTTGCAT--ACCAAAAGCAT---------------CA.................................................................................................................................................................................2811.00100000000000001000
..................................................................................................................CTAGGAAGG-----------CTGGCGGAA-----------A-------TC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................AA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGC.................................................................................................................................................................................................................2511.00101000000000000000
...CAA-CA---ACAACAGC---AGCAGCA------------ACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000001000000000
droSec2
CAGCAA-CAACAACAGCAGCAACAACAGCA------------GCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAGGAAGG-----------CTGGCGGAC-----------A-------TCCT------------------------------------------------------------------------ACTCACAG---AGCGGAAAT-----------------CAGAAACAAA--------------------------------A----CATACATTGATACA----T-TGAA-----CTCACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTC---------------TGAGTTGCCGTAA--TTTTAT----------AATTT-GTTGA--GCCAA---AATACTCTTCGC-TTACAATTTGTGTTG------CT---GCAGT----------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................GCC-AATGTTC--------------------------CTAGGAAGG-----------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................................................CAGCAGCGCACACGCAGACGGTTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...........................................................................................................................................GGAC-----------A-------TCCT------------------------------------------------------------------------ACTCACAG---AGCGGA..........................................................................................................................................................................................................................................................................................................................2311.0010010
.......................AACAGCA------------GCAATCGCAGCAGCGCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
...........AACAGCAGCAACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020020
.................AGCAACAACAGCA------------GCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.0811000
..........CAACAGCAGCAACAACAGCA------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000
dm3
CAGCAG-CA---ACAACA---------GCA------------GCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAGGAAGG-----------CTGGCGGACGCGACGGCCACA---TCCATTCT------------------------------------------------------------------------ACTCACAG---AGCGCGAAT-----------------CAGAAACAAG--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATTTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAA--TTTTAT----------AATTT-CTTGA--GCCAA---AATACTCTTCGC-TTACAATTTCTGTTG------CT---GCAGT----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--GCCAA---AATACTCTTCGC-TTACA................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ATTCT------------------------------------------------------------------------ACTCACAG---AGCGCGAAT-----------------CAGAAAC...............................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CAAG--------------------------------A----CAG------ATACA----T-TGAA-----CTC.......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCCGTAA--TTTTAT----------AAT....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................TACA----T-TGAA-----CTCACTTGCAT--ACC..........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TTC--------------------------CTAGGAAGG-----------CTGGCGGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................CGAAT-----------------CAGAAACAAG--------------------------------A----CAG------A.............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------------TGAGTTGCCGTAA--TTTTA..................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................ACGCAGACGGTTAGCACGCC-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................TGGCGGACGCGACGGCCACA---TCCATT.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CGCC-AATGTTC--------------------------CTAGGAAGG-----------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................CACACGCAGACGGTTAGCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................A---------GCA------------GCAATCGCAGCAGCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................CA---------GCA------------GCAATCGCAGCAGCGCACACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CACACGCAGACGGTTAGCACGCC-AAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................A----CAG------ATACA----T-TGAA-----CTCACTTGC.................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................AATGTTC--------------------------CTAGGAAGG-----------CTGGCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATC-TTT---------------TGAGTTGCCGTAA--TT.....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................AAGG-----------CTGGCGGACGCGACGGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATC-TTT---------------TGAGTTGCCGTAA--TTTTA..................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TC-TTT---------------TGAGTTGCCGTAA--TTT....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AAAAGCAT---------------CTTTGATTT------------ACA...........................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAACA---------GCA------------GCAATCGCAGCATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAACAA-CA---ACAGCAGC---AGCAGCA------------GCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGTACGAGACGGCCACA---TCCATCCT------------------------------------------------------------------------ACTCACAG---AACAGGAAG-----------------CAGAAACAAA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGCAT--AACAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAC--TTTTAT----------AATTT-GTTAA--GCGAAGCGAAGTGTATTCGC-TTACAATTTGTGTTG------CT---GCAGT----------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................GAAG-----------------CAGAAACAAA--------------------------------A----CAG------ATACA----T-T..................................................................................................................................................................................................................................2511.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTCGC-TTACAATTTGTGTTG------C...............................2511.0011000000
........A---ACAGCAGC---AGCAGCA------------GCAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000010
.AACAA-CA---ACAGCAGC---AGCAGCA------------GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1021000010
....AA-CA---ACAGCAGC---AGCAGCA------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
.AACAA-CA---ACAGCAGC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000
CAACAA-CA---ACAGCAGC---AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010
CAACAA-CA---ACAGCAGC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
...CAA-CA---ACAGCAGC---AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
..ACAA-CA---ACAGCAGC---AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
.AACAA-CA---ACAGCAGC---AGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
droYak3
CAGCAA-CA---GCAGCAGCATCAACAGCA------------GCAATCGCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGCAAGCGACGGCCACA---TCCATCCT------------------------------------------------------------------------ACTCACAG---AACAGGAAG-----------------CAGAAACAAA--------------------------------A----CAG------ATACA----T-TGAA-----CTCACTTGCAT--ACCGAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAC--ATTTAT----------AATTT-GTTGA--GCCAA---AATACTCTTCGC-TTACAATTTGCGTTG------CT---GCAGT----------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATC-TTT---------------TGAGTTGCCGTA..........................................................................................................2211.00100000010000
.............................................ATCGCAGCAGCGCACACGCAGACGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................CTTGCAT--ACCGAAAGCAT---------------CTTTGAT............................................................................................................................................................................2511.00100000100000
.........................................................................................................................................................................................................................................................AACAGGAAG-----------------CAGAAACAAA--------------------------------A----CAG------G.............................................................................................................................................................................................................................................2411.00110000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTGATC-TTT---------------TGAGTTGCC.............................................................................................................2311.00100000010000
......................................................................................TC--------------------------CTAAGAAGG-----------CTGGCGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................A----T-TGAA-----CTCACTTGCAT--ACCGAAA......................................................................................................................................................................................................2411.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------------TGAGTTGCCGTAC--ATTTAT----------AATTT-GTT..............................................................................2911.00100000010000
..............................................................................................................................................................................................................................................ACTCACAG---AACAGGAAG-----------------CA....................................................................................................................................................................................................................................................................................................1911.00100000010000
....AA-CA---GCAGCAGCATCAACAGCA------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.20101000000000
..GCAA-CA---GCAGCAGCATCAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.20101000000000
CAGCAA-CA---GCAGCAGCATCAACAGCA------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.20100000010000
.........................CAGCA------------GCAATCGCAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.17101000000000
............GCAGCAGCATCAACAGCA------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.06101000000000
droEug1
CAGCAG-CA---ACAGCAAC---AGCAGCA------------GCAATCCCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGGAAGCGTCGGCCACA---T----CTC------------------------------------------------------------------------ACGCATAC---AACAGGAAC-----------------CAAATTCGAA--------------------------------A----CAG------ATACA----T-CCAA---CACACACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCTGTAC--TTTTAT----------GATTT-GTTGA--GCCAA---AACACTTTTTGC-TTACAACTTGTGTTG------CT---GCAGTAA-------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
CAGCAA-CA---ACAACAGC---AGCAGCA------------GCAATCTCAGCAGCGAACACGCAGACGGTTAGCACGCC-AATGCTC--------------------------CTAAGAGGG-----------TCGACAGAAGCGACGGCCACA---T----CCCA---------------------------------------------------------------------C-ATCCACA----AACAGGAAC-----------------CAACACCGAA--------------------------------A----CAG------AAACA----T-CCAA-----CACATTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAA--CTTTAT----------GATTT-GCTGA--GTG----------------------AATTTGTGTTG------CC------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAACAG-CA---TCAACA------ACAGCA------------GCAATCCCTGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGGAAGCGACGGCCACA---T----CCCA---------------------------------------------------------------------CATCCCACAA---AACAGGAAA-----------------CAAAACCGAA--------------------------------A----CAG------ATACA----T-CCAACAACACACATTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ATGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCATCA--TTTTAT-------T-TGATTT-GTTGA--GCCAACAACACACTATTCGC-TTACAATTTGTGTTG------CT---GCAGTAA--------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAACAA-CA---GCAACAGC---AGCAACAACAACAGCAGCAGCAATCCCAACAGCGTACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAAAAGC-----------CTGGCGGAAGCGACGGCCACA---T----CCC------------------------------------------------------------------------GCCCATAT---ACCTGGAACCAAAA------T-----CGAAACCGAA--------------------------------A----CAG------ATCCA----T-C-AA-----CACACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ACGTT------TCAATTGATC-TTT---------------TGAGTTGTCGTAA---TTTAT----------GATTT-GTTGA--ACCAA----ACAATTTTCGC-TTGCAATTTGTTTTG------CC---GACGT----------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAA-CA---ACAACAGC---AGCAGCA------------GCAATCCCAGCAGCGCACACGCAGACGGTTAGCACGCC-AATGTTC--------------------------CTAAGAAGG-----------CTCGCGGATTTGACGGCCACA---T----CCC------------------------------------------------------------------------ACCCATAC---ATCAGGAAC-----------------CGAAACCGAA--------------------------------A----CAG------ATACA----T-CCAA-----CACACTTGCAT--ACAAAAAGCAT---------------CTTTGATTT------------AAATT-----TTTAATTGATC-TTT---------------TGAGTTGCCGTAA--TTTTAT----------GATTT-CTTGA--AACAA----ACACTTTTCGC-TTAAAATTTGTGTTG------CT---GCAGT----------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAACAA-CAACTACAGCAGC---AGCAGCAACAACAGCAGCAGCAATCGCAGCAGCGCACACGCAGACGGTTAGCTCGCC-AATGTTC--------------------------CTAAGAAGG-----------CTGGCGGAAGCGACGGCCACA---T----CCC------------------------------------------------------------------------ACCCATAC---AGCAGAAAC-----------------CGA-----GA--------------------------------A----CAG------ATACA----T-TCAC---ACTTCACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ACGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCATAA--TTTTAT----------GATTT-CTTGA--GCCAA----ACACTTTTCGC-TTACAATTTGTGTTG------CT---GCAGT----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGCAA-CA---ACAGCAGC---AACAGCA------------ACAACAACAGCAGCGCACACGGAGACGGTTAGCACGGGCCGCATTTTAAGC-------------------------GAAAC-----------CTGGCGAA-ACAACAGCCTCT---T----C-A------------------------------------------------------------------------ACTC-----------------------------------------------------------------------------------------ATCCA----C-CAAA-----AACACTTGCAT--ACCAAAAGCAT---------------CTTTGATTT------------ACGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTTC--AATTT-GT-----TATGATTT----------------------CTGCGC-TTGCAATTTGAGT----------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CAACAG-CA---ACAGCAG------------------------------ACCCAACGCACACGCAGACGGTTAGATCGAACTAAATTC---------------------------TAA-CCGC-----------CTGGCGGAT-----------A-------GCTC------------------------------------------------------------------------ATCCACAC---AGCAG-AACC--AG------A-----CACAACCGAA--------------------------------A----CAGACATCCAGACA----T-CCAC-----CACACTCGCAT--ACCGAAAGCAT---------------CTTTGAGTT------------ACGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTAT--ACTTAT----------AATTT-GTTGA--GCCCG----ACACTTTTCGC-TTGCCATTTGTGTTG------CG---TCAGC----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................AG-AACC--AG------A-----CACAACCGAA--------------------------------A----CAGACAT................................................................................................................................................................................................................................................2711.001100000
................CAG------------------------------ACCCAACGCACACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................CAACGCACACGCAGACGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----------AATTT-GTTGA--GCCCG----ACACC............................................................2311.001010000
droBip1
------------------------------------------------GTCGCAGCGCACACGCAGACGGTTAGAACGAACTAAATTC---------------------------TAA-CCGC-----------CTGGCGGAC-----------A-------CCTC------------------------------------------------------------------------ATCCACAC---AGCCGAAAC-----------------C--------A--------------------------------A----CCG------ACACA----T-CCAC-----TACACTCGCAT--ACCGAAAGCAT---------------CTTTGAGTT------------ACGTT-----TTCAATTGATC-TTT---------------TGAGTTGCCGTATATATTTAT----------AATTT-GTTGA--GCCCG----ACACTTTTCGC-TTGCCATTTGTGTTG------CGTCAGCAGT----------------------SizeHit CountTotal NormTotal
No Reads
dp5
AACCAG-------------------------------------------AACCAGCGCACACGCAGACGGTTAGAACGCCCAGTATTA--------------------------TAAAGAAAACAGAACAGAAG-------------------------------------------------------------------------------------------------------------------------AACC--TGGAGGACACGCACCA-----GAAACAGAAA-------------------------A----CA-------TGCAATACAT-T--A-----CTCTCT---------------CAT---------------CCTTGATTT-------------CGTTAATTCGTTAATTGATC-GT----------------TGAGTTGCCTTTA--ATTTTC----------ATTTT-GTTAA--GAAAA-------TTATACGTTTTGCAATCAGAATTC------A--------T----------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................TA--------------------------TAAAGAAAACAGAACAGAAG-------------------------------------------------------------------------------------------------------------------------AACC--....................................................................................................................................................................................................................................................................................................................2612.0020000000200
...............................................................................................................................................................................................................................................................................................................................................................CTCTCT---------------CAT---------------CCTTGATTT-------------CGTTAA.......................................................................................................................................................2411.0010000001000
..........................................................ACACGCAGACGGTTAGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATC-GT----------------TGAGTTGCCTTTA--ATT....................................................................................................2511.0010000100000
...........................................................CACGCAGACGGTTAGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
.......................................................................................A--------------------------TAAAGAAAACAGAACAGAAG-------------------------------------------------------------------------------------------------------------------------AACC--T...................................................................................................................................................................................................................................................................................................................2611.0010010000000
................................................................................................................................................................................................................................................................................................................................................TACAT-T--A-----CTCTCT---------------CAT---------------CCTTGATTT-------------CGT..........................................................................................................................................................2811.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATC-GT----------------TGAGTTGCCTTTA--ATT....................................................................................................2611.0010010000000
droPer2
AACCAG-------------------------------------------AACCAGCGCACACGCAGACGGTTAGAACGCCCAGTATTA--------------------------TAAAGAAAACAGAACAGAAG-------------------------------------------------------------------------------------------------------------------------AACC--TGGAGGACACGCACCA-----GAAACAGAAA-------------------------A----CA-------TGCAATACAT-T--A-----CTCTCT---------------CAT---------------CCTTGATTT-------------CGTTAATTCGTTAATTGATC-GT----------------TGAGTTGCCTTTA--ATTTTC----------ATTTT-GTTAA--GAAAA-------TTATACGTTTTGCAATCAGAATTC------A--------T----------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................GCACACGCAGACGGTTAGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGTTAATTGATC-GT----------------TGAGTTGCC.............................................................................................................2712.002200000
.......................................................CGCACACGCAGACGGTTAGAACGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
........................................................................................................................AAACAGAACAGAAG-------------------------------------------------------------------------------------------------------------------------AACC--T...................................................................................................................................................................................................................................................................................................................1912.002200000
................................................................................................................................CAGAAG-------------------------------------------------------------------------------------------------------------------------AACC--TGGAGGACACGCACCA-----GA.............................................................................................................................................................................................................................................................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGTTAATTGATC-GT----------------TGAGTTGCCT............................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGATC-GT----------------TGAGTTGCCTTTA--AT.....................................................................................................2611.001100000
..........................................................ACACGCAGACGGTTAGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATC-GT----------------TGAGTTGCC.............................................................................................................1811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTCGTTAATTGATC-GT----------------TGAGT.................................................................................................................2511.001010000
.................................................................................................................................AGAAG-------------------------------------------------------------------------------------------------------------------------AACC--TGGAGGACACGCACCA-----...............................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................................................................AG-------------------------------------------------------------------------------------------------------------------------AACC--TGGAGGACACGCACCA-----G..............................................................................................................................................................................................................................................................................................2311.001010000
droWil2
CAACAA-CA---GCAGCAGC---AACAGTAACA---------AC-ATTTCAGCTACAAAAGGGTCGACGACTTTTGCGCC-CGCATTGAAGGCAGAGGGACGTCTATAAGGAAACTGAGAAGG-----------CTAAAGGAGGAGGTAG----------------------------------------------------------------------------------------------AG---AAGGAGGAG-----------------CATGA-----------GGACTGCAGCTGGTCAATGGCATAAAG----CAA------ATAAA----T-GGAA-----ATTGTT---------TAAAGTTAG---------------CTTTGGTTT------------ATGGC-----CTTAGTCGTTC-ATG---------------CTAATTGC--------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....A-CA---GCAGCAGC---AACAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.14100010
.AACAA-CA---GCAGCAGC---AACAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11101000
CAACAA-CA---GCAGCAGC---AACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
droVir3
CA-------------------------------------------------GCAGCGCTCACGCAGACGGTTAGCACGTCCAGTATTATAAGCAGAGAGCCA----------------GAGAG-----------AGGGCGGAC-----------AGCAT----TTCACAATCATA-T--ATCACACATTGAGAAC--AAC-----GACAACAACAACAA-CAACAACCACAACAAA-------C-A---CACAGACAA-----------------CAACAACA-A--------------------------------A----CAG------AACAA----TTCAAG-----CACACGCACATCTATCTAAAGCATATTTTGTTTTTTTTTTTTTTTTTTTTAAAAAAGTTGCTGTT-----TAA-TTTGATTTAC-AAATTGATTTGTTTTTCTACTCTTTTTA--ATTTTC-----A----ATTGT-TTTCA--CTTAA----ACAAAATTTGC-TTGCAATTTGTGTTTGAAGAATT---GTCAT----------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................AGCGCTCACGCAGACGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002001000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AACAACA-A--------------------------------A----CAG------AACAA----TTCAAG-----CACA......................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................CCACAACAAA-------C-A---CACAGACAA-----------------CAAT..................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................ACACGCACATCTATCTAAAGC....................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGTTTGAAGAATT---GTC........................2111.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................CACACATTGAGAAC--AAC-----GACAACAACA..................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................G-----CACACGCACATCTATCTAAAGC....................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-TTGCAATTTGTGTTTGAAGAAT...............................2611.001001000000000000000000000000000000000000000000000000000000000000
.A-------------------------------------------------GCAGCGCTCACGCAGACGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................GAGAGCCA----------------GAGAG-----------AGGGCGGAC-----------A..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAAG-----CACACGCACATCTATCTAAAGC....................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CACACATTGAGAAC--AAC-----GACAACAA....................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGC-TTGCAATTTGTGT........................................1811.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AG-----CACACGCACATCTATCTA........................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TTGAGAAC--AAC-----GACAA.......................................................................................................................................................................................................................................................................................................................................................................1620.501000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................AAC-----GACAACAACAACAA-CAACAA.......................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CAACAACAA-CAACAACCACA..................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000010000
droMoj3
CGAGTT-TG---GCACCGCC---AGCGG-------------------TGCAGCAACGCTCACGCAGACGGTTAGCACGTCCAGTATTATAAACAG-----------------------AGCAA-----------CAAGCGGAC-----------AGCATCTATCAC--AATCATAAACAACCACA----------------------------CAACAA-CAACAACCAAAACA-A-------T-A---CACAGACAA-----------------CAACAACA-A--------------------------------ACAGCCAG------AACTA----T-CAAG-----CACACGCACAT--CC---AAGCAT---------------ATTTTGTTT---CAAAAGCCGCTGTT-----TAAGTTTGATT-ATT---------------GAAATTGATTTTG--TTTT-CATTTCGATTTGTTTTACTTGAAAGACAA---CAAACAAGTTGC-TTAAAGAA-TTGTCA------TT---GAAAC----------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATTTTG--TTTT-CATTT.............................................................................................2011.001100000
.............................................................................GTCCAGTATTATAAACAG-----------------------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................GTTT---CAAAAGCCGCTGTT-----TAAG................................................................................................................................................2211.001100000
..............................................................................................................................................................................AAACAACCACA----------------------------CAACAA-CAAC.........................................................................................................................................................................................................................................................................................................................................................2111.001000010
....................................................................................ATTATAAACAG-----------------------AGCAA-----------CAAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..........................................................TCACGCAGACGGTTAGCACGTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droGri2
CAACAAGCA--GACATCAG-----ACAGCA------------GCA------------------------------------------------------------------------------------------AAGCGGAT-----------ACCAT----TTCACAATCACA-TTAACCACACATTGAGAACTCAACTCACTCAGAACAACAAGAAGCGACAGCAAAGAAACAC-ACTCAGACAACAACAGAAAC-----------------CACAGAAACA--------------------------------ACAGCAAC------AATTA----T-CCAA---AACACACTCACAT--CTCAAAAGCAT---------------ACTTAAGTT------------GAGTT-----AACAATTTAAT-TTC-----------TTT-TGATTTGTT--TG--TTTT------------GTTTTACTTAA--ACG---------A------------AATTTGCTTGT------TT---GAAAAAAAAGAAAAGAGAAGAACAATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:48 AM