ID:

dsi_7822

 Coordinate:

2r:20892409-20892641 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2r_20892642_20893519_-]; CDS [2r_20892642_20893340_-]; CDS [2r_20892184_20892408_-]; exon [2r_20891567_20892408_-]; intron [2r_20892409_20892641_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGTTGTTTGGTCACCTCATCTTCCCTACGGGGGTGTTAGTGGGGCCGGGTGGTTGGACGACAACCATGTGGCACACTTTCGCACTCTCTTAAGTCCTCTCTTGCGACATTGCTGCGCATGCCCATGTAGCCACGGAGAGTTGTGGCGGCGGGGAAGAGGAGGACCCATCCACCTGGCCCATCTGTGCTGATTTGTTTATATCATCGATTTGCTTTCTCCGATCCTTGCAGCTCATGCTGGACGAGGAGGGCCGCTCCCGGCGCTTCGGTTTCGTGGCCTA
**************************************************(((((.((...(((((((((.(((((((...((((((((.((((..((((.(((((((.....))))))).)))).))))...)))))))).............((((.((....))))))((((......(((((((....)))))))))))))))))).))))...........)))))))..)))))((((........)))).....((((..............))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................................................................................................................................CTCATGCTGGACGAGGAGG............................... 19 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................CATGCTGGACGAGGAGGGC............................. 19 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CATGCTGGACGAGGAGGGCCGCTCCC...................... 26 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................GTTGGACAACAACCATGTGGCACA............................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TGGAGACACGGAGTGTTGTGG....................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0
........................................................................................................................................................................................ACGGAGGCTTGTGGCGGC................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0
................GTTCGAGTCCTACTGCCGGA......................................................................................................................................................................................................................................................................................................... 20 3 9 0.22 2 0 0 0 0 0 1 1
.............................................................................................GGGGGCGGGTGGTTGG................................................................................................................................................................................................................................ 16 1 20 0.15 3 0 0 0 0 0 3 0
.......................................................................................................................................................................................................................................................................................................................GGCGTGTCGGGTTCGTGGC... 19 3 20 0.05 1 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................................GACGAGGATGGCCGTTCT....................... 18 3 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

TCGTAAACGCGCTCTACAAGCTCGGGATGCCGGCGTAGTGGTCAGTGTTCCATGCAACAAACCAGTGGAGTAGAAGGGATGCCCCCACAATCACCCCGGCCCACCAACCTGCTGTTGGTACACCGTGTGAAAGCGTGAGAGAATTCAGGAGAGAACGCTGTAACGACGCGTACGGGTACATCGGTGCCTCTCAACACCGCCGCCCCTTCTCCTCCTGGGTAGGTGGACCGGGTAGACACGACTAAACAAATATAGTAGCTAAACGAAAGAGGCTAGGAACGTCGAGTACGACCTGCTCCTCCCGGCGAGGGCCGCGAAGCCAAAGCACCGGAT
**************************************************(((((.((...(((((((((.(((((((...((((((((.((((..((((.(((((((.....))))))).)))).))))...)))))))).............((((.((....))))))((((......(((((((....)))))))))))))))))).))))...........)))))))..)))))((((........)))).....((((..............))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
............................................................................................................................................................................................................................................................................................AGTCCGACCTGCTCCTC................................ 17 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GGCCGCGAAGCGAAAG........ 16 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................ACCGGCTCCTACCGGCGAGGCCC.................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..........GCTCTACTACCTCGGGAT................................................................................................................................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 1 0 0 0
...........................................................................................................ACTGCTGTTGGTACGCGGTG.............................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 1 0 0
..............................................................................................................GCTGTTGGTACGCCGTGG............................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 1 0
.............................................................................................................TGCTGTTGGTACATCG................................................................................................................................................................................................................ 16 1 8 0.13 1 0 1 0 0 0 0 0
............................................................................................................CTGCTGTTGGTACGC.................................................................................................................................................................................................................. 15 1 8 0.13 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................AAAAGAAAGTGGCTAGGA....................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0
.......................................................................AGAAGGGAAGCCCCGAC..................................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................GAGGGCCGCGAAGCTG........... 16 2 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................CAGACTGCTGTTGGTACG................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1
........................................................................GCAGGGATGCCCCTA...................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0 0
............................................................................................................CTGCTGTTGGTACGGGGTG.............................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:20892359-20892691 - dsi_7822 AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTCCCTAC----------------------------------------------------------------------------------------------GG---------------------GGGTGTTAG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACACTTTCGC-ACT---------C---------------------------------------------------------TCTTAAGTCCTCTCT------------TGCGACA-TTGCTG--CGCATGCCCAT--------------GTAGC----------CAC----G-----GA-------------------GAG-TTGTG---GCGGCGGGGA--AG-A---GGAGGACCCAT-------------------CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGCCGCTCCCGGCGCTTCGGTTTCGTGGCCTA
droSec2 scaffold_23:286250-286582 - AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TATCCTAC----------------------------------------------------------------------------------------------GG---------------------GGGTGTTAG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACACTTTCGC-ACT---------C---------------------------------------------------------TCTTAAGTCCTCTCT------------TGCGACA-TTGCTG--CGCATGCCCAT--------------GTAGC----------CAC----G-----AG-------------------GAG-TTGTG---GCGGCGGGGA--AG-A---GGAGGACCCAT-------------------CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTAGACGAGGAGGGGCGCTCCCGGCGCTTCGGTTTCGTGGCCTA
dm3 chr2R:20412016-20412346 - AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTCCCTAC----------------------------------------------------------------------------------------------GG---------------------GGATGTTCG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACAGTTTTGC-ACT---------C---------------------------------------------------------TCTTAAGTCCTCTCT------------TGCGCCA-TTGCTG--CGCATGCCCAT--------------GTAGC----------CAC----G-----AG-------------------GAGTTTGTG---ACGGCGGGGA--AG-A---TGAGGAC---T-------------------CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------AATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTTCGGTTTCGTCGCCTA
droEre2 scaffold_4845:21781042-21781371 - AGCATTTGCGCGAGATGTTTGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTCCCTGC----------------------------------------------------------------------------------------------GG---------------------GGGTGTTAG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACAGTTTCGC-ACT---------C---------------------------------------------------------TCTTGGGTGTTCTCT------------TGCGACA-TTGCTG--CGCATGCCTAT--------------GGTGC----------CAC----G-----AG-------------------GAG-TTGTG---GCGGCGGGGA--AG-A---GGAGGAC---T-------------------CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTTCGGTTTCGTGGCGTA
droYak3 2R:20380512-20380850 - AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTTCCTGC----------------------------------------------------------------------------------------------GG---------------------GGGTGTTAG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACAGTTTTGC-ACT---------C---------------------------------------------------------TCTTACATCCGCTCT------------TGCGACA-TTGCTG--CGCATGCCCAT--------------GTAGC----------CAC----G-----AG-------------------GAG-TTGTG---GCGGCGGGGA--AG-A---TGAGGAC---TCC---ACA------TGGCT-CAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGCTTCGGTTTCGTGGCCTA
droEug1 scf7180000409464:775773-776089 - AGCACTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGCTT--------------------GGTCACCTCACA--------------------------------------------------TTACCAGC----------------------------------------------------------------------------------------------GG---------------------GGGTGTGAG---CTGGGCCGGGTG------------GTTGGC---CGACAACCATGTGGCATAGTTTCTC-ACG---------C---------------------------------------------------------TCTTAAATCCTCTCT------------TGTCCCA-TTGCTG--CGCATGCTCAC--------------GGA------------------------------------------------G-CTGTG---GAAGCGGGGG--AG------GA-GAT---T-------------------CCGT--TG---------------------------------------------------------------GGCCCATCTGTGCG-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTGTGAT--CTTTGCAGCTCATGTTGGACGAGGAGGGCCGCTCCCGGCGATTCGGTTTCGTGGCTTT
droBia1 scf7180000301754:3499269-3499619 + AGCACTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCTCCTCGCT--------------------------------------------------TTCCCA----TCCCATTCCAC----CCGA-----------------------------------------------------------------------GCGG---------------------GGGTGTGAG---CTGGGCCGGGTG------------GTTGGA---CGTCAACCATGTGGCACAGTTTCTC-ACG---------C---------------------------------------------------------TCTTAAATCCTCTCT------------TGGCCCG-TTGCTG--CGCATGCCTAA--------------GGAGTCG--TAACTCCGC----G-----TG-------------------------GTGGCAGCAGCGGGGG--AGGA---GGA-GAT---T-------------------CCTT--TG---------------------------------------------------------------GGCCCATCTGTGCG-------GATTTGTTT------ATAG-----TATCGTTTTGCCTT--------------------------CTCCGAT--CATTTCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGCCGCTTCGGTTTCGTGGCGTT
droTak1 scf7180000415376:419166-419437 - AGCACTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTGGGT------------TATTTGCCTGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---------CCAACCATGTGGCACAGTTATTC-CCT---------C---------------------------------------------------------TCTTAAATCCGCTCT------------TGTTGCT-TTGCTG--CGCATGCCCAG--------------GAAGC-------------------------------------------------------------GGGGGA-GGGA---GTA-GAT---T-------------------CCTT--CA---------------------------------------------------------------GGCCCATCTGTTCC-------GATTTGTTT------ATAT-----CATCGATTTGCTTT-----C--------------------CAACGAT--CCTTTTAGCTCATGCTGGACGAGGAGGGGCGCTCGCGGCGCTTCGGCTTCGTGGCCTT
droEle1 scf7180000491214:4590546-4590883 + AGCATTTGCGTGAAATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--TTGGTTGTTTTTGCTTCTGGTTACCTTTTT--------------------------------------------------TGACCAGC----------------------------------------------------------------------------------------------GG---------------------GGGTGTGAG---TTGAGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACAGTTTCTC-ACG---------C---------------------------------------------------------TCTTAAATCCGCTCT------------TGCCACA-TTGCTG--CGCATGCCCAT--------------GGA------------------------------------------------G-TTGGG---G------G------------GC-AGT---T-------------------ACAC--TG-----------------------------------------G-------------------GCGGCCCATCTGTTCAGATTTCAGATTTGTTT------ATAT-----CATCGATTTGATCC-----------------------GATCTCCGAT--CCTTGCAGCTCATGTTGGACGAGGAGGGGCGCTCGCGGCGCTTCGGTTTCGTGGCTTT
droRho1 scf7180000776849:95557-95881 - AGCACTTGCGTGAAATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--TTGGTT----------TTGGTCACCTTCC------------------------------------------------------CCAGC--------------------------------------------------------------------------------------------GAGG---------------------GGGTGTGAG---TTGGGCCGGGTA------------GTTGGA---CGACAACCATGTGGCACAGATTCAC-ACG---------C---------------------------------------------------------TCTTAAATCCGCTCT------------TGCCACA-TTGCTG--CGCATGCCCAT--------------GAAGC----------CGC----G-----AG-------------------GAG-GTGGG----------G------------GC-AGT---T-------------------ACAC--TG-----------------------------------------G-------------------GCGGCACATCTGTTCA-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCTGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGTCGCTTCGGTTTCGTGGCTTT
droFic1 scf7180000453342:264265-264591 - AGCACTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TTGTT-TTT----------------GTTC---CCAT-------------------------------------------------------------------ACCTC----CGTAAAGAGG------------G-C----------------------------------------------------GG---------------------TAGTGCAAG---TTGGGCCGGGTG------------GTTGCA---GGACAACCATGTGGCACAGTTTCTC-ACG---------C---------------------------------------------------------TCTTAAATTCGCTCT------------TGCCGCA-TTGCTG--CGCATGCCCAT--------------TA--------------------G-----AG-------------------GAA-ATA--------GGAGGGGA-A--A---CGA-GAT---T-------------------CCGC--TA---------------------------------------------------------------GGTCCATCTG--CG-------GATTTGTTT------ATATCAC--CATCAACGTGTTCT--------------------------ATCTGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGCTTCGGTTTCGTGGCCTA
droKik1 scf7180000302277:765900-766266 + AGCACTTGCGCGAGATGTTTGAGCCGTACGGCCGCATCACCAGTCACAAGGTATGTTC----------TTTTT--------------------GGTCACCTTTCC--------------------------------------------------TCAC--GG--CTCT----------------------------------------------------------------------------------------AA---------------------GGCTGTGGG---TG------GGTGGGTGACAG---GACTGCAGATGGACAACCATGTGGCACTGTTTCTC-ACGCACT-----C--------------A---GCCG------------------CGC--------------TCTTAGTTCCGCTCT-----------TTGTCCCC-TTGCTG--CGCATGCTCAC--------------GG----------------------GATGAGAGAA----------AGAGAGAG-ATGTG---ACAGCGGGGG--AGGA---CAAG---C---GACTGAGAGAGAGAGACTTGCAC--TT---------------------------------------------------------------GGCCCATCTGAGCG-------GATTTGTTT------ATTT-----CATGGACTT-----------------------------------GAT--CCTTGCAGCTCATGCTGGACGAGGAAGGGCGCTCGCGGCGCTTCGGTTTCGTGGCTTT
droAna3 scaffold_13266:15959773-15960155 - dan_2036 AGCACTTGCGGGAGATGTTCGAGCCCTACGGTCGCATCACCAGTCATAAGGTATGT------------TTGAA-GTTGTTTGTCTACGTGTGTGGTCACCTTCCC--------------------------------------------------TCTC--GC-----------------CGGAATGTGT------------G-CGGGGT-------------------------------------------------------------------GTGGAATGTG-------------GGTGGGTGAGAG---AAATGCAGATGGACGACCATGTGGCACAGTTTCTC-ACGCACCCGGTGC---------------------------------------------------------TCTTACGTGCGCTCT------------TCCCTGT-TTGGTG--CGCATGCTCCTTGGTGAGGCTGTTAAG------------------------------------------------------------CATTAAGGG--AGGA---GGAG---C---GC---ACA------TGATTGCAC--TT---------------------------------------------------------------GTGCCGCCGA-G-A-------GGTTTGTTT------ATTTCGCAACATCTCATTGATTT--------------------------CTCTGAT--CCTGGCAGCTTATGCTCGACGACGAGGGACGCTCCCGCCGTTTCGGATTCGTGGCCTA
droBip1 scf7180000396567:449246-449626 - AGCACTTGCGGGAGATGTTCGAGCCCTACGGTCGCATTACCAGTCATAAGGTATGT------------TTGAA-GTTGTTTGTCTACGTG--TGGTCACCTTCCC--------------------------------------------------TCTC--GC-----------------CGGAATGTGT------------G-CGGGGT-------------------------------------------------------------------GTGGAATGTG-------------GGTGGGTGAGAG---AAATGCAGATGGACGACCATGTGGCACAGTTTCTC-ACGCACCCGGTGC---------------------------------------------------------TCTTAGGTGCGCTCT------------TCCCTGTTTTGGTG--CGCATGCTCCC-----------------------------CGC----A-----TG-------------------GAG-CAGTT---TCATTAAGGG--AGGA---GGAG---C---GT---ACA------TGATTGCAC--TT---------------------------------------------------------------GGACCGCCGA-G-A-------GGTTTGTTT------ATTTCGCAACATCTTATTGATTT--------------------------CTCTGAT--CCTGGCAGCTAATGCTCGACGATGAGGGACGCTCCCGCCGTTTCGGATTCGTAGCCTA
dp5 3:18256344-18256851 + AGCACTTGCGCGAGATGTTCGAGCCCTATGGGCGCATCACCAGTCACAAGGTTCGT------------TATGT-CTTGATTGTCTACTTACA-----ACCTTACA--------------------------------------------------CTTCC--------CGTCCGTCCGTCCAGCCTGTTC------------G-CATGGCGTGGGTGATGTCCGTGTGGGTGGATTGGCGAAAGCCGATTGCCA----------------AGAGGGAGGGCGGC------AGAG------------AGAGTG---AACTGCAGATGGAAAACCATGTGGCACAGTTTCCC-ACTATC----TGC---------------------------------------------------------TCTTAAATTCGCTCT------------TCC--CT-TTGCCGCGCGCATGCCCACTG-----------------------------CTCGCGGGTCGTGGGAATACGTCGACAATAGAGGG-GAGGG---CCGGCCCGGC-C-GGATAA---C---C-----CCAAGAAAGTGTGGATTGCAG--TC--GTC--TTAATGTG-----CGCGAGCGGGA-GCCCCTATCG-ACAGC---------------------------TT-------GATTTGTTT------A--C-----TATCGATTTCG---AATAGATGATAACAGGATATTTTCGTTTGTAAT--CATTGCAGTTGATGCTCGACGAGGAGGGACGCTCACGCCGGTTCGGATTTGTGGCTTT
droPer2 scaffold_34:198952-199459 + AGCACTTGCGCGAGATGTTCGAGCCCTATGGGCGCATCACCAGTCACAAGGTTCGT------------TATGT-CTTGATTGTCTACTTACA-----ACCTTACA--------------------------------------------------CTTCC--------CGTCCGTCCGTCCAGCCTGTTC------------G-CATGGCGTGGGTAATGTCCGTGTGGGTGGATTGGCGAAAGCCGATTGCCA----------------AGAGGGAGGGCGGC------AGAG------------AGAGTG---AACTGCAGATGGAAAACCATGTGGCACAGTTTCCC-ACTATC----TGC---------------------------------------------------------TCTTAAATTCGCTCT------------TCC--CT-TTGCCGCGCGCATGCCCACTG-----------------------------CTCGCGGGTCGTGGGAATACGTCGACAATAGAGGG-GAGGG---CCGGCCCGGC-C-GGATAA---C---C-----CCAAGAAAGTGTGGATTGCAG--TC--GTC--TTAATGTG-----CGCGAGCGGGA-GCCCCTATCG-ACAGC---------------------------TT-------GATTTGTTT------A--C-----TATCGATTTCG---AATAGATGATAACAGGATATTTTCGTTTGTAAT--CATTGCAGTTGATGCTCGACGAGGAGGGACGCTCACGCCGGTTCGGATTTGTGGCTTT
droWil2 scf2_1100000004512:2030925-2030980 - AGCATTTGCGTGAGATGTTTGAGCCCTATGGGCGCATCACCAGTCATAAGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:16895355-16895814 + dvi_7364 AGCATTTGCGTGAAATGTTCGAGCCCTATGGCCGCATCACCAGTCACAAGGTGCGT------------ATATT-TATGTTTGTCTA-----------------------------------------------------------------------TTTTGCGAAT--ATTTTAG--CACAGGATGTGTAGGCCGG----GG-CG--GG-GCGGCGGAGCTGGTGG----GGGTTG-------CC-GTTACCGAGAGA----------------GAGTGAGATATGGAAGGGG---AGAGCTA------------GTTGCA---GATAAACCATGTGGCACACTTTGCC-A-T---------CTCTTAAG-----CCA---ACAGCAGGC-ATCTCA-----ACGCTTTCCGCTCCCGGCTCTC---CGCTCTCTTAGCCAACGCTCCGGCTCA-ATGCTG--CGCATGCCCGC---------CCTAAAGAAC-------CTG--GTCGT------------------------------------------------------------------------------------------GGTTGT----GGCCC-ATGCGTTCCCAGCCAATGGCT-GCCGCAATGG-GCAG-----------------------------C-------AATTTGTTA------A-AC-----ATTTGATTTTAATT--------------------------ATTCAATGCACTTGCAGTTGATGCTGGATGAGGAGGGACGCTCGCGTCGTTTTGGATTTGTGGCATT
droMoj3 scaffold_6496:11106921-11107403 - AGCATTTGCGAGAAATGTTTGAGCCCTATGGCCGCATTACCAGTCACAAGGTGCGTCTATTCTAATGTTGTTT--------------------GTTCACTTCTCT--------------------------------------------------TTTTTTGTGAATATATTTTAG--GGCAGGCAG-GCAGGCAGGCCAATGCCG--GG-GC--------------------------------------------GGTGGCGGGAGAAAGGG-----GGAGTATGAG---TGAGAGCTG----------G---AGCTGCA---GATAAAGCATGTGGCACACTTTGTC-A-T---------CTCTTAAGAAACGCCACTCACAGCACTCTCTCTCACACTCACAC--------------TCTCACTCTCGCTCTTAGCCCGCGCTCCGGCCAA-CTGGTG--CGCATGCCCGC---------CCTAAAGAATTAACTAAC--------------------------------------------------------------------------------------------TGATTGTCG--TC--GTC--CCGCT----------ACAAAGGTTCGCTGCAACGGGGCAGCAGTAGCAGCCGCAGCAACCGA-TTGTTGTCATTGTA-----ATTG------CTAT-----TATTAATTCGAA---------------------------------ATTCATTTACAGTTGATGCTGGATGAGGAGGGACGTTCACGCCGTTTTGGATTCGTGGCATT
droGri2 scaffold_15245:16435949-16436417 + AGCATTTGCGTGAGATGTTCGAACCCTATGGCCGCATCACCAGTCACAAGGTGCGTTTA----------TATT-TATTATTCTTTACTTAT-------CTTTTCTTTTTTCGGTTTTTCTGTTTTCTGTTTTCTGTTTTTTTTTTTTTTTTTTTGCTACTTACGAATCTGTTTTT-------------GTGGGCGGG----TG-CTGGGG-GC--------------------------------------------GGT------------GG-----GGTGCGTAAG---CGAGAGCTG----------GTTTTGCTGCAG--CCAAAACCATGTGGCACACTTTGGCTACT--C----AGCTCTTAAGAG--GCCA---ACAG------------------------------------------CGCTCTCTTTGCTCCAGCTGCGGCTCT-TTGCTG--CGCATGCCCGC---------CCTCAAC--------------------A-----A----------------------C-CAGTC---GA-----------TGT---GTAG---------CAAAGAAATTGTGAATTGCAA--TTTCGTC--T-------------------------------------------------------G--CAA-TTCTTGT-ATTGTA-----ATTGTAATTCA--T-----TGTTCAATTC----AATAACAA--------------------ATAAC--AATTGCAGCTGATGCTGGATGAGGAGGGACGTTCGCGACGCTTCGGATTTGTGGCATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTCCCTAC----------------------------------------------------------------------------------------------GG---------------------GGGTGTTAG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACACTTTCGC-ACT---------C---------------------------------------------------------TCTTAAGTCCTCTCT------------TGCGACA-TTGCTG--CGCATGCCCAT--------------GTAGC----------CAC----G-----GA-------------------GAG-TTGTG---GCGGCGGGGA--AG-A---GGAGGACCCAT-------------------CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGCCGCTCCCGGCGCTTCGGTTTCGTGGCCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTGGACGAGGAGG...............................1911.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGGACGAGGAGGGC.............................1911.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGGACGAGGAGGGCCGCTCCC......................2611.00101000000000000000
droSec2
AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TATCCTAC----------------------------------------------------------------------------------------------GG---------------------GGGTGTTAG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACACTTTCGC-ACT---------C---------------------------------------------------------TCTTAAGTCCTCTCT------------TGCGACA-TTGCTG--CGCATGCCCAT--------------GTAGC----------CAC----G-----AG-------------------GAG-TTGTG---GCGGCGGGGA--AG-A---GGAGGACCCAT-------------------CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTAGACGAGGAGGGGCGCTCCCGGCGCTTCGGTTTCGTGGCCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGACGAGGAGGGGCGCTCCC......................2311.0010001
dm3
AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTCCCTAC----------------------------------------------------------------------------------------------GG---------------------GGATGTTCG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACAGTTTTGC-ACT---------C---------------------------------------------------------TCTTAAGTCCTCTCT------------TGCGCCA-TTGCTG--CGCATGCCCAT--------------GTAGC----------CAC----G-----AG-------------------GAGTTTGTG---ACGGCGGGGA--AG-A---TGAGGAC---T-------------------CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------AATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTTCGGTTTCGTCGCCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAGGAGGGGCGCTCCCGGCGTA................26110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGGCGTTTCGGTTTCGT......2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGAGGAGGGGCGCTCCCGG....................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGACGAGGAGGGGCGCTCCCGGC...................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTTGCGCGAGATGTTCGAGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCCCTACGGCCGCATCACCAGTCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TACGGCCGCATCACCAGTCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGACGAGGAGGGGCGCTCCCG.....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGATGTTCGAGCCCTACGGCCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGACGAGGAGGGGCGCTCCCGG....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................CACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAGGGGCGCTCCCGGC...................2011.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGACGAGGAGGGGCGCTCCCGGC...................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCTCTCT------------TGCGCCA-TT............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............AGATGTTCGAGCCCTACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......TGCGCGAGATGTTCGAGCCCTACGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGACGAGGAGGGGCGCT.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGCGCTCCCGGCGTTTCGGTT..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTT--------------------------CTCCGAT--CCTTGCAG..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGACGAGGAGGGGCGCT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGCGAGATGTTCGAGCCCTACGGCCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAGGGGCGCTCCCGGCG..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCGAGCCCTACGGCCGCATCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGA--AG-A---TGAGGAC---T-------------------CCAC--CT---------------------------------------------------------------GG......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------------GAGTTTGTG---ACGGCGGGGA--AG-A---TG...........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGACGAGGAGGGG.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTGGACGAGGAGGGGCGCTCCCGG....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...ATTTGCGCGAGATGTTCGAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCATTTGCGCGAGATGTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGACGAGGAGGGGC............................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--------------GTAGC----------CAC----G-----AG-------------------GAGTTT......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGGGA--AG-A---TGAGGAC---T-------------------CCAC--.........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...ATTTGCGCGAGATGTTCGAGCCCTACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGAGCCCTACGGCCGCATCACCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCGAGCCCTACGGCCGCATCACCAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAGGAGGGGCGCTCCCGGC...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ACGGCGGGGA--AG-A---TGAG.........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................................................................................................................TG------------GTTGGA---CGACAACCATGTGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGCTGGACGAGGAGGGGCGCT.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCGAGCCCTACGGCCGCATCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---ACGGCGGGGA--AG-A---TGAGGAC---...................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGACGAGGAGGGGCGCTCCCGGC...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCATTTGCGCGAGATGTTTGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTCCCTGC----------------------------------------------------------------------------------------------GG---------------------GGGTGTTAG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACAGTTTCGC-ACT---------C---------------------------------------------------------TCTTGGGTGTTCTCT------------TGCGACA-TTGCTG--CGCATGCCTAT--------------GGTGC----------CAC----G-----AG-------------------GAG-TTGTG---GCGGCGGGGA--AG-A---GGAGGAC---T-------------------CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTTCGGTTTCGTGGCGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................GTTTGAGCCCTACGGCCGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GCGGCGGGGA--AG-A---GGAGGAC---...................................................................................................................................................................................................................................................2111.0010000010
.............GATGTTTGAGCCCTACGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------G..................................................................................................................................2111.0010001000
droYak3
AGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCACCTCATC--------------------------------------------------TTTCCTGC----------------------------------------------------------------------------------------------GG---------------------GGGTGTTAG---TGGGGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACAGTTTTGC-ACT---------C---------------------------------------------------------TCTTACATCCGCTCT------------TGCGACA-TTGCTG--CGCATGCCCAT--------------GTAGC----------CAC----G-----AG-------------------GAG-TTGTG---GCGGCGGGGA--AG-A---TGAGGAC---TCC---ACA------TGGCT-CAC--CT---------------------------------------------------------------GGCCCATCTGTGCT-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGCTTCGGTTTCGTGGCCTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTTGCTTT--------------------------CTCCGAT--CCTTGCAG..................................................2711.00101000000000
droEug1
AGCACTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGCTT--------------------GGTCACCTCACA--------------------------------------------------TTACCAGC----------------------------------------------------------------------------------------------GG---------------------GGGTGTGAG---CTGGGCCGGGTG------------GTTGGC---CGACAACCATGTGGCATAGTTTCTC-ACG---------C---------------------------------------------------------TCTTAAATCCTCTCT------------TGTCCCA-TTGCTG--CGCATGCTCAC--------------GGA------------------------------------------------G-CTGTG---GAAGCGGGGG--AG------GA-GAT---T-------------------CCGT--TG---------------------------------------------------------------GGCCCATCTGTGCG-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTGTGAT--CTTTGCAGCTCATGTTGGACGAGGAGGGCCGCTCCCGGCGATTCGGTTTCGTGGCTTTSizeHit CountTotal NormTotal
No Reads
droBia1
AGCACTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--------------------GGTCTCCTCGCT--------------------------------------------------TTCCCA----TCCCATTCCAC----CCGA-----------------------------------------------------------------------GCGG---------------------GGGTGTGAG---CTGGGCCGGGTG------------GTTGGA---CGTCAACCATGTGGCACAGTTTCTC-ACG---------C---------------------------------------------------------TCTTAAATCCTCTCT------------TGGCCCG-TTGCTG--CGCATGCCTAA--------------GGAGTCG--TAACTCCGC----G-----TG-------------------------GTGGCAGCAGCGGGGG--AGGA---GGA-GAT---T-------------------CCTT--TG---------------------------------------------------------------GGCCCATCTGTGCG-------GATTTGTTT------ATAG-----TATCGTTTTGCCTT--------------------------CTCCGAT--CATTTCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGCCGCTTCGGTTTCGTGGCGTTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCACTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTGGGT------------TATTTGCCTGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---------CCAACCATGTGGCACAGTTATTC-CCT---------C---------------------------------------------------------TCTTAAATCCGCTCT------------TGTTGCT-TTGCTG--CGCATGCCCAG--------------GAAGC-------------------------------------------------------------GGGGGA-GGGA---GTA-GAT---T-------------------CCTT--CA---------------------------------------------------------------GGCCCATCTGTTCC-------GATTTGTTT------ATAT-----CATCGATTTGCTTT-----C--------------------CAACGAT--CCTTTTAGCTCATGCTGGACGAGGAGGGGCGCTCGCGGCGCTTCGGCTTCGTGGCCTTSizeHit CountTotal NormTotal
No Reads
droEle1
AGCATTTGCGTGAAATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--TTGGTTGTTTTTGCTTCTGGTTACCTTTTT--------------------------------------------------TGACCAGC----------------------------------------------------------------------------------------------GG---------------------GGGTGTGAG---TTGAGCCGGGTG------------GTTGGA---CGACAACCATGTGGCACAGTTTCTC-ACG---------C---------------------------------------------------------TCTTAAATCCGCTCT------------TGCCACA-TTGCTG--CGCATGCCCAT--------------GGA------------------------------------------------G-TTGGG---G------G------------GC-AGT---T-------------------ACAC--TG-----------------------------------------G-------------------GCGGCCCATCTGTTCAGATTTCAGATTTGTTT------ATAT-----CATCGATTTGATCC-----------------------GATCTCCGAT--CCTTGCAGCTCATGTTGGACGAGGAGGGGCGCTCGCGGCGCTTCGGTTTCGTGGCTTTSizeHit CountTotal NormTotal
No Reads
droRho1
AGCACTTGCGTGAAATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TGTTT--TTGGTT----------TTGGTCACCTTCC------------------------------------------------------CCAGC--------------------------------------------------------------------------------------------GAGG---------------------GGGTGTGAG---TTGGGCCGGGTA------------GTTGGA---CGACAACCATGTGGCACAGATTCAC-ACG---------C---------------------------------------------------------TCTTAAATCCGCTCT------------TGCCACA-TTGCTG--CGCATGCCCAT--------------GAAGC----------CGC----G-----AG-------------------GAG-GTGGG----------G------------GC-AGT---T-------------------ACAC--TG-----------------------------------------G-------------------GCGGCACATCTGTTCA-------GATTTGTTT------ATAT-----CATCGATTTGCTTT--------------------------CTCTGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGTCGCTTCGGTTTCGTGGCTTTSizeHit CountTotal NormTotal
No Reads
droFic1
AGCACTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAGTCACAAGGTACGT------------TTGTT-TTT----------------GTTC---CCAT-------------------------------------------------------------------ACCTC----CGTAAAGAGG------------G-C----------------------------------------------------GG---------------------TAGTGCAAG---TTGGGCCGGGTG------------GTTGCA---GGACAACCATGTGGCACAGTTTCTC-ACG---------C---------------------------------------------------------TCTTAAATTCGCTCT------------TGCCGCA-TTGCTG--CGCATGCCCAT--------------TA--------------------G-----AG-------------------GAA-ATA--------GGAGGGGA-A--A---CGA-GAT---T-------------------CCGC--TA---------------------------------------------------------------GGTCCATCTG--CG-------GATTTGTTT------ATATCAC--CATCAACGTGTTCT--------------------------ATCTGAT--CCTTGCAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGCTTCGGTTTCGTGGCCTASizeHit CountTotal NormTotal
No Reads
droKik1
AGCACTTGCGCGAGATGTTTGAGCCGTACGGCCGCATCACCAGTCACAAGGTATGTTC----------TTTTT--------------------GGTCACCTTTCC--------------------------------------------------TCAC--GG--CTCT----------------------------------------------------------------------------------------AA---------------------GGCTGTGGG---TG------GGTGGGTGACAG---GACTGCAGATGGACAACCATGTGGCACTGTTTCTC-ACGCACT-----C--------------A---GCCG------------------CGC--------------TCTTAGTTCCGCTCT-----------TTGTCCCC-TTGCTG--CGCATGCTCAC--------------GG----------------------GATGAGAGAA----------AGAGAGAG-ATGTG---ACAGCGGGGG--AGGA---CAAG---C---GACTGAGAGAGAGAGACTTGCAC--TT---------------------------------------------------------------GGCCCATCTGAGCG-------GATTTGTTT------ATTT-----CATGGACTT-----------------------------------GAT--CCTTGCAGCTCATGCTGGACGAGGAAGGGCGCTCGCGGCGCTTCGGTTTCGTGGCTTTSizeHit CountTotal NormTotal
No Reads
droAna3
AGCACTTGCGGGAGATGTTCGAGCCCTACGGTCGCATCACCAGTCATAAGGTATGT------------TTGAA-GTTGTTTGTCTACGTGTGTGGTCACCTTCCC--------------------------------------------------TCTC--GC-----------------CGGAATGTGT------------G-CGGGGT-------------------------------------------------------------------GTGGAATGTG-------------GGTGGGTGAGAG---AAATGCAGATGGACGACCATGTGGCACAGTTTCTC-ACGCACCCGGTGC---------------------------------------------------------TCTTACGTGCGCTCT------------TCCCTGT-TTGGTG--CGCATGCTCCTTGGTGAGGCTGTTAAG------------------------------------------------------------CATTAAGGG--AGGA---GGAG---C---GC---ACA------TGATTGCAC--TT---------------------------------------------------------------GTGCCGCCGA-G-A-------GGTTTGTTT------ATTTCGCAACATCTCATTGATTT--------------------------CTCTGAT--CCTGGCAGCTTATGCTCGACGACGAGGGACGCTCCCGCCGTTTCGGATTCGTGGCCTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................GGGGT-------------------------------------------------------------------GTGGAATGTG-------------GGTGGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
............................................................................................................................................................................................................CGGGGT-------------------------------------------------------------------GTGGAATGTG-------------GGTGGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000002
...................CGAGCCCTACGGTCGCATCACCAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
................GTTCGAGCCCTACGGTCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGAGGGACGCTCC.......................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCGACGACGAGGGACGC..........................2011.001100000
.GCACTTGCGGGAGATGTTCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCTCGACGACGAGGGACGCTCCC......................2711.001100000
..............................................................................................................................................................................................................GGGT-------------------------------------------------------------------GTGGAATGTG-------------GGTGGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droBip1
AGCACTTGCGGGAGATGTTCGAGCCCTACGGTCGCATTACCAGTCATAAGGTATGT------------TTGAA-GTTGTTTGTCTACGTG--TGGTCACCTTCCC--------------------------------------------------TCTC--GC-----------------CGGAATGTGT------------G-CGGGGT-------------------------------------------------------------------GTGGAATGTG-------------GGTGGGTGAGAG---AAATGCAGATGGACGACCATGTGGCACAGTTTCTC-ACGCACCCGGTGC---------------------------------------------------------TCTTAGGTGCGCTCT------------TCCCTGTTTTGGTG--CGCATGCTCCC-----------------------------CGC----A-----TG-------------------GAG-CAGTT---TCATTAAGGG--AGGA---GGAG---C---GT---ACA------TGATTGCAC--TT---------------------------------------------------------------GGACCGCCGA-G-A-------GGTTTGTTT------ATTTCGCAACATCTTATTGATTT--------------------------CTCTGAT--CCTGGCAGCTAATGCTCGACGATGAGGGACGCTCCCGCCGTTTCGGATTCGTAGCCTASizeHit CountTotal NormTotal
No Reads
dp5
AGCACTTGCGCGAGATGTTCGAGCCCTATGGGCGCATCACCAGTCACAAGGTTCGT------------TATGT-CTTGATTGTCTACTTACA-----ACCTTACA--------------------------------------------------CTTCC--------CGTCCGTCCGTCCAGCCTGTTC------------G-CATGGCGTGGGTGATGTCCGTGTGGGTGGATTGGCGAAAGCCGATTGCCA----------------AGAGGGAGGGCGGC------AGAG------------AGAGTG---AACTGCAGATGGAAAACCATGTGGCACAGTTTCCC-ACTATC----TGC---------------------------------------------------------TCTTAAATTCGCTCT------------TCC--CT-TTGCCGCGCGCATGCCCACTG-----------------------------CTCGCGGGTCGTGGGAATACGTCGACAATAGAGGG-GAGGG---CCGGCCCGGC-C-GGATAA---C---C-----CCAAGAAAGTGTGGATTGCAG--TC--GTC--TTAATGTG-----CGCGAGCGGGA-GCCCCTATCG-ACAGC---------------------------TT-------GATTTGTTT------A--C-----TATCGATTTCG---AATAGATGATAACAGGATATTTTCGTTTGTAAT--CATTGCAGTTGATGCTCGACGAGGAGGGACGCTCACGCCGGTTCGGATTTGTGGCTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AGCACTTGCGCGAGATGTTCGAGCCCTATGGGCGCATCACCAGTCACAAGGTTCGT------------TATGT-CTTGATTGTCTACTTACA-----ACCTTACA--------------------------------------------------CTTCC--------CGTCCGTCCGTCCAGCCTGTTC------------G-CATGGCGTGGGTAATGTCCGTGTGGGTGGATTGGCGAAAGCCGATTGCCA----------------AGAGGGAGGGCGGC------AGAG------------AGAGTG---AACTGCAGATGGAAAACCATGTGGCACAGTTTCCC-ACTATC----TGC---------------------------------------------------------TCTTAAATTCGCTCT------------TCC--CT-TTGCCGCGCGCATGCCCACTG-----------------------------CTCGCGGGTCGTGGGAATACGTCGACAATAGAGGG-GAGGG---CCGGCCCGGC-C-GGATAA---C---C-----CCAAGAAAGTGTGGATTGCAG--TC--GTC--TTAATGTG-----CGCGAGCGGGA-GCCCCTATCG-ACAGC---------------------------TT-------GATTTGTTT------A--C-----TATCGATTTCG---AATAGATGATAACAGGATATTTTCGTTTGTAAT--CATTGCAGTTGATGCTCGACGAGGAGGGACGCTCACGCCGGTTCGGATTTGTGGCTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGCATTTGCGTGAGATGTTTGAGCCCTATGGGCGCATCACCAGTCATAAGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............AGATGTTTGAGCCCTATGGGCGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...ATTTGCGTGAGATGTTTGAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...ATTTGCGTGAGATGTTTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
droVir3
AGCATTTGCGTGAAATGTTCGAGCCCTATGGCCGCATCACCAGTCACAAGGTGCGT------------ATATT-TATGTTTGTCTA-----------------------------------------------------------------------TTTTGCGAAT--ATTTTAG--CACAGGATGTGTAGGCCGG----GG-CG--GG-GCGGCGGAGCTGGTGG----GGGTTG-------CC-GTTACCGAGAGA----------------GAGTGAGATATGGAAGGGG---AGAGCTA------------GTTGCA---GATAAACCATGTGGCACACTTTGCC-A-T---------CTCTTAAG-----CCA---ACAGCAGGC-ATCTCA-----ACGCTTTCCGCTCCCGGCTCTC---CGCTCTCTTAGCCAACGCTCCGGCTCA-ATGCTG--CGCATGCCCGC---------CCTAAAGAAC-------CTG--GTCGT------------------------------------------------------------------------------------------GGTTGT----GGCCC-ATGCGTTCCCAGCCAATGGCT-GCCGCAATGG-GCAG-----------------------------C-------AATTTGTTA------A-AC-----ATTTGATTTTAATT--------------------------ATTCAATGCACTTGCAGTTGATGCTGGATGAGGAGGGACGCTCGCGTCGTTTTGGATTTGTGGCATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................GTGCGT------------ATATT-TATGTTTGTCTA-----------------------------------------------------------------------TTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000020000000000000000000000000000000000
.........GTGAAATGTTCGAGCCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000002000000000000000000000000000000000
................GTTCGAGCCCTATGGCCGCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCTGGATGAGGAGGGAC............................2311.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
AGCATTTGCGAGAAATGTTTGAGCCCTATGGCCGCATTACCAGTCACAAGGTGCGTCTATTCTAATGTTGTTT--------------------GTTCACTTCTCT--------------------------------------------------TTTTTTGTGAATATATTTTAG--GGCAGGCAG-GCAGGCAGGCCAATGCCG--GG-GC--------------------------------------------GGTGGCGGGAGAAAGGG-----GGAGTATGAG---TGAGAGCTG----------G---AGCTGCA---GATAAAGCATGTGGCACACTTTGTC-A-T---------CTCTTAAGAAACGCCACTCACAGCACTCTCTCTCACACTCACAC--------------TCTCACTCTCGCTCTTAGCCCGCGCTCCGGCCAA-CTGGTG--CGCATGCCCGC---------CCTAAAGAATTAACTAAC--------------------------------------------------------------------------------------------TGATTGTCG--TC--GTC--CCGCT----------ACAAAGGTTCGCTGCAACGGGGCAGCAGTAGCAGCCGCAGCAACCGA-TTGTTGTCATTGTA-----ATTG------CTAT-----TATTAATTCGAA---------------------------------ATTCATTTACAGTTGATGCTGGATGAGGAGGGACGTTCACGCCGTTTTGGATTCGTGGCATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTAGCAGCCGCAGCAACCGA-.................................................................................................................................................2411.001000010
..........................................................................................................................................................................................................................................................................................GTATGAG---TGAGAGCTG----------G---AGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGGACGTTCACGCCG..................2011.001100000
..........................................................................................................................................................................................................................................................................................GTATGAG---TGAGAGCTG----------G---AGCTGCA---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................CCTATGGCCGCATTACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droGri2
AGCATTTGCGTGAGATGTTCGAACCCTATGGCCGCATCACCAGTCACAAGGTGCGTTTA----------TATT-TATTATTCTTTACTTAT-------CTTTTCTTTTTTCGGTTTTTCTGTTTTCTGTTTTCTGTTTTTTTTTTTTTTTTTTTGCTACTTACGAATCTGTTTTT-------------GTGGGCGGG----TG-CTGGGG-GC--------------------------------------------GGT------------GG-----GGTGCGTAAG---CGAGAGCTG----------GTTTTGCTGCAG--CCAAAACCATGTGGCACACTTTGGCTACT--C----AGCTCTTAAGAG--GCCA---ACAG------------------------------------------CGCTCTCTTTGCTCCAGCTGCGGCTCT-TTGCTG--CGCATGCCCGC---------CCTCAAC--------------------A-----A----------------------C-CAGTC---GA-----------TGT---GTAG---------CAAAGAAATTGTGAATTGCAA--TTTCGTC--T-------------------------------------------------------G--CAA-TTCTTGT-ATTGTA-----ATTGTAATTCA--T-----TGTTCAATTC----AATAACAA--------------------ATAAC--AATTGCAGCTGATGCTGGATGAGGAGGGACGTTCGCGACGCTTCGGATTTGTGGCATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGATGAGGAGGGACGTTCG.......................2411.00101

Generated: 05/18/2015 at 09:39 AM