ID:

dsi_7795

 Coordinate:

3l:4487812-4488031 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.3 -14.3 -14.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTCAGTTCCGAACGGGCAAAAAACAATTTAGCGCCCTCTGAAACGCTCTGTGTTTTATTTTCCACTTAAAATATTAAAAAAAATGCATAAAAATTGCACACGTCGCTGATAACTCGCTGGTATACTTATTGTCTAAAATACTGGCTTTTCCTTTCAAATCATTTGGAAAATATGACATGATAAGTGAACAGTAGCCGCGCCGAGAATTTTTGGATGAGTGGCGGCTGTTATTCCGTTTATTTTTGAGTTTGTCTTAAAAACCCCAAGCGCATAAACAATTAAAGTCAGACAACACCATCGTTAAACGAATTAAAAGTGA
************************************************************************************************.................((.((((...(((((((((((............((((((.............))))))...))))..)))))))..))))))..*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 GSM343915
embryo
.................................................................................................................................................................................................................................................................................................................ACGAATTAAAAGTGA 15 0 2 37.50 75 51 21 0 1 0 0 0 1 1 0 0 0
..................................................................................................GCACGTCGCTGATAAC.............................................................................................................................................................................................................. 16 1 1 5.00 5 0 0 0 5 0 0 0 0 0 0 0 0
.................................GCCCTCTGAAACGCTCTG............................................................................................................................................................................................................................................................................. 18 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
......TTCCGAACGGGCAAAAAAC....................................................................................................................................................................................................................................................................................................... 19 0 1 3.00 3 0 0 1 0 0 2 0 0 0 0 0 0
............................................................................................................................................................................ATGACATGATAAGTGAACAGTAGCC........................................................................................................................... 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.......................ACAATTTAGCGCCCTCTGAAACGC................................................................................................................................................................................................................................................................................. 24 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................CACGTCGCTGATAACG............................................................................................................................................................................................................. 16 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................ATTTAGCGCCCTCTGAAACGCT................................................................................................................................................................................................................................................................................ 22 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0
...........AACGGGCAAAAAACAATT................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAGGGAACAGTAGGCGCGCCGA.................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................AATTTAGCGCCCTCTGAAACG.................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................AAAGTCAGACAACACCATCG................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................AAACAATTTAGCGCCCTC......................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................GCCCTCTGAAACGCTCTGTGC.......................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TCAGACAACACCATCGTTAAACGAA.......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GCACACGTCGCTGATAACTCGCTGGT...................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TGCACACGTCGCTGATAACTCGCTGGG...................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........CGAACGGGCAAAAAACAATTTAGC............................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................AAAAATTGCACACGTCGCTGATAACT............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................GCACACGTCGCTGATAACTCGCTGGC...................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................ATACTTATTGTCTAAAATACT................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................TTTTTGAGTTTGTCTTAAAAACCCC....................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................CACGTCGCTGATAAC.............................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................CCCAAGCGCATAAACAATTAAAGTCAGA.............................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAGTGAACAGTAGCCGCGCCG..................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................TTTGGAAAATATGACATG............................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................GCCCTCTGAAACCCTCTG............................................................................................................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................ACGTCGCTGATAACG............................................................................................................................................................................................................. 15 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGAGAATTTGTGGATGAGT.................................................................................................... 19 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................CACGTCGCTGATAACGA............................................................................................................................................................................................................ 17 2 17 0.24 4 0 0 0 4 0 0 0 0 0 0 0 0
..................................................................................................GCACGTCGCTGATAA............................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................CATGTCGCTGATAAC.............................................................................................................................................................................................................. 15 1 13 0.15 2 0 0 0 2 0 0 0 0 0 0 0 0
..................CAAAAACGATTTAGCGCC............................................................................................................................................................................................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGCACGTCGCTGATAAC.............................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................ACACTTAGACTATTAAAAAAAA............................................................................................................................................................................................................................................ 22 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GCACGTCGCTGATAACG............................................................................................................................................................................................................. 17 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTGGAGAATTTGACATGATT......................................................................................................................................... 21 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................ACAATATAGGGCCCT.......................................................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................TCGAATTAAAAGTGA 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TGAGTCAAGGCTTGCCCGTTTTTTGTTAAATCGCGGGAGACTTTGCGAGACACAAAATAAAAGGTGAATTTTATAATTTTTTTTACGTATTTTTAACGTGTGCAGCGACTATTGAGCGACCATATGAATAACAGATTTTATGACCGAAAAGGAAAGTTTAGTAAACCTTTTATACTGTACTATTCACTTGTCATCGGCGCGGCTCTTAAAAACCTACTCACCGCCGACAATAAGGCAAATAAAAACTCAAACAGAATTTTTGGGGTTCGCGTATTTGTTAATTTCAGTCTGTTGTGGTAGCAATTTGCTTAATTTTCACT
***************************************************************************************************************************.................((.((((...(((((((((((............((((((.............))))))...))))..)))))))..))))))..************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body
.......................................................................................................................................................................................................................ACTCACCGCCGACAATAAGGC.................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................ATAAAAGGTGAATTTTATAAT................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
TGAGTCAAGGCTTGCCCGTTT........................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................ATAAAAGCTGAATGTTATAATTTCTT.............................................................................................................................................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................GTGCAGCGACTATTGGGCGA......................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................AAAGGTGAATTTTATAATTT................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CGGCGCGGCTCTTAGAAAGCT......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................TTTGTTAAATCGCGGGAGACC...................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................AAAAGGAAAGTTTAGTAAAC.......................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................AGACTTTGCGAGACACAAAAT...................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATACTGTACTATTCA...................................................................................................................................... 15 0 5 0.60 3 0 0 0 2 0 0 0 1 0
.........................................................................................................................................................................TTATACTGTACTATTCA...................................................................................................................................... 17 0 5 0.40 2 0 0 0 2 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TTTGTTAATTTCAGTCT.............................. 17 0 3 0.33 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................TTTATACTGTACTATTCA...................................................................................................................................... 18 0 5 0.20 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................TCGTCTGCGCGGCTCTTA................................................................................................................ 18 2 8 0.13 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................TTATTCCAGTCTGTTGT......................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0 0
.........................................................................................TTTTTTGGGTGTGCAGCGAC................................................................................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................AAAGAGAAGTTTAGTAAA........................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................GAAAAGGTGAATTGTATA..................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................TATTCCAGTCTGTTGT......................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:4487762-4488081 + dsi_7795 ACTCAGTTCCGAACGGGCAAAAAACAATTTAGCGCCCTCT------------------GAAACGCTCT----GTGTTTTATTTTCCACTTAAAA-TATTAAA-AAAAATGCATA-----A--------AAATTGCACACGTCGCTGATAACTCGCT-GGTATACTTATTGTCT-----------------A-AAATA-----CTGGCTTTTCCTTTC-AAATCATTTGGAAAAT------ATGACATGA---TAAGTGAACAGTAGCCGCGCCGAGAATTT-TTGGATGAGTGGCGG-CTGTTATTCCGTTTATTTT---TGAGTTTGTCTT-AAAAA--CC--CCAAGCG--CATAA-----ACAATT--------AAAGTCAGAC--AACACCATC---GTTAAAC---------GAATTA--AAAGTGA
droSec2 scaffold_2:4524813-4525135 + ACTCAGTTCCGAACGAGCAAAAAACAATTTAGCGCCCTCT------------------GAAACGCTCT----GTGTTTTATTTTCCACTTAAAA-TATTAAAAAAAAATTCATA-----A--------AAATTGCACACGTCGCTGATAACTCGCTCGGTATACTTATTGCCT-----------------A-AAATA-----CTGGCTTTTCCTTTC-AAATCATTTGGAAAAT------ATGACATGATATTAAGTGATTA--AGCCGCGCCGAGAATTT-TTCGATGAGTGACGG-CTGTTTTTCCGTTTATTTT---TGAGTTTGTCTT-AAAAA--CC--CCAATCG--CATAA-----ACAATT--------AAAGTCGGAC--AACACCATC---GTTAAAC---------GAATTA--AAACTGA
dm3 chr3L:4542129-4542445 + ACTCAGTTCCGAACGGGCAAAAAACAATTTAGCGCCCTCT------------------GAAACGCTCT----GTGTTTTATTTTCCACTTAAAA-TATTAAA--AAAGTGCATA-----A--------AAATTGCACACGTCGCTGATAACTCGCTCGGTATACTTATTCTCT-----------------A-AAATA-----CTGTCT------TTC-AAATCAGTTGGAAAAT------ATGACATGATAATAAGTGAACAATAGCCGCGCCGAGAATTT-TTCGACGAGTGACGG-CGGTTATTCCGTTTTTTAT---TCAGTTTTTCTT-AAAAA--AC--CCAAGCG--CATAA-----ACAATT--------AAAGTCGGAC--AACACCATC---GTTAAAT---------GAATTA--AAAGTGA
droEre2 scaffold_4784:7250662-7250969 + ACTCGGTTCCGAACGCGCAAAAAACAATTCAGCGCACTCT------------------GAAACGCGCT----GTGTATC--GTACCACTTAAAATTAA-ACA-AAAAATACATA-----A--------AAATTGCACACGTCGCTGATAAATCGCACGGTAAACTAATCATTT-----------------C-AAATA-----CCGCCTTTCTATTTC-AAATCGGTTAAAAAAT------ATGACATGATAATAAGTGAACAGTAGCCGCGCCGAGAATT-----GATGAGTGGCGG-CGGCTATTCTGTTG-TTCT---TTAGTT---CTT-AAAA----------AGCG--CATAA-----ACAAAT--------ACATGCAGAC--AACACCGTT---GTTAAAC---------GAATTG--AAAGTGA
droYak3 3L:5114780-5115098 + ACTCAGTTTCGAACGAGCAAAAAACAATTTAGCGCCCTCT------------------GAAACGCTCT----GTGTATCATT-CTCAATTAAAA-TATTAAA---AAATACATA-----A--------AAATTGCACACGTCGCTGATAAATCTAACGGTACACTTATCATCT-----------------A-AAATA-----CAGGCTTTCGCTTTC-AAATCTGTTGAAAAAT------ATGACATGATAATAAGTGAACAGTAGCCGCGTCGAAAATGG-TTCGATGAGTGGCGG-CGGCTATTCTGTTG-TTTT---TTAGTT---CTT-TAAAA--AA--CTAAGTG--CATAA-----ACAATT--------AAAGTCAGACGCAACATCATT---GTTAAAT---------GAGTTT--AAAGTGA
droEug1 scf7180000409466:2316598-2316895 + TCTCAGTTCCAAGCGAGCAA---ACAATTTAGCACCCTCT------------------------------------TTTCATTCCCAGTTGGAATTATTAAT---AATTATATA-----T--------ATTTAACAAAG------GATTAACTGTTGGGCACAAATATCTAGC-----------------AAAAGTA-----C-GTCCTTAAATTTCAAAAACGGTTA-AAATT------ATGACTTGGTAATAAAAGAAAGGAAGCCGCGCGGTAAATTTGTTCGATGAGTAGCGG-CGGTTTTTCTCCTT-TTTT---TAAGTTATTCCT-TAAAA--A---AAGTACG--CATAA-----ACAATA--------ATACTCAAAA--A-AAACAAC---ATAAAAC---------AAATAC--AAAGTGA
droBia1 scf7180000302428:9927272-9927542 - A-----------------------CAATTTTGCACCCTCT------------------GAGACGCGCTGCTCGTGTTT--TTCCCCACTTGAAATTGT-TTA-AAGTATATATT-A---A--------AAAACACAGTCGTCGGTGACTTTTCGCG-GGTAAAGTAGTGAAGC-----------------A-ACATATGTAGCTTGTTTTCGCTTTC-AAAACTGCTA-CGGTT------ATGCCATGATGCCAAATGAGTTATATCCG-GCTGATA------------------------------------TTAG---TTTATTTATCAT-CAAAA--A---CGCAACT--CATAA-----ACAATA--------ATAT---AAC--AGCAACATATGGATAAAAC---------CAGTGC--AAAGTGA
droTak1 scf7180000415941:455630-455959 + AA---GT-ATAAACGCTC-----ACATTTTAGCACCCTTT------------------GAAACGCGCAGCTTGTGTTT--TTCCCGACTTAAAAATAT-AAA-AAGAATATATCTAAAAA--------GAAACGCAGTCGACGCTGACTTATCGCCGGTTACAAA-AT--------CGAAATCGTGAAGTAATATTA-----CTGGCTTTCGATTTCCAAAACGATTT-GAGTT------ATGACATGATACTCAATAAATTATAGCCGCGCGGTAAAATT-ATCTACGAGTGGCGG-CGGTACTTAGGTTT--TTT---TTATTTATTCTT-CAAGAGAA--ACAAAACG--CATAA-----ACAATA--------GTAGCCAAAC--AACAACAAA----TGAAAG---------AATTTT--AAAGTGA
droEle1 scf7180000491249:5437586-5437902 + TTTGAATTTCAT---------------------------T------------------TAGACGCGCTACTCGTGTTTTCTTTCCCACTTAAAAATATTAAA---AAATATATCTAAAAAAAGGAAGCAAATAACATCCGGTGTCAGTACATCTTTGTATGTAATTTTCTACTGAT-----------------AATA------TAGTTACCGTTATT-AAAATTGTTG-AAATTATTGAAATTACACGATGATAAATAATTTATAACCGCGCAGTGGTTTT-TCCGTTTTGTGGCGT-CGGTTTTTATGTTT---TT---TAAGTAAATGTT-AAAAA--GCAGCATTACT--CATAA-----ACAATA--------ATAATCATTC--GTCAACAAA---TAAAACC---------GAAATA--AAAGTGA
droRho1 scf7180000779370:1015-1350 + ---------CGAACGAGCA--------TTTAGCACCCTCTCACTCTGTGAATTTCACTTAGACGCGCTGCTTGTGTTTTCTTTCCCACTTAAGAATATTAAA---AAATATATA-AAAACTAGGAAA-AAATAGCAATCGTTGTCAGTATAACGCCGTTTACAATTTTCTACTAATT----------------GATA-----CTGTGTACAGC---T-AAAACTGTTG-AAATT------ATGACAAGATGTTAAATAAATTTTAACCGCGCTGTGGTTTT-TTCGATGAGTGGTGG-CGGTTTTTATGTTT--TTT---TAAGTTTATATTTAAAAAAAA--ACATTACG--CATAA-----AAAA----------AGAATCTTAC--GGCAACAAA---TCAAAAC---------ATATAC--AAAGTGA
droFic1 scf7180000454065:1046927-1047049 - A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTAGTGAAAAATAGCCGCGCGGCGGTTTT-TTCGATTAGGGGCGC-TGATTCTTTC-----TGTT---TAAGTTAATAAT-AAATA--AC--AA---------------------A---------AAAATTAAAA--AACAACATA---ATTAAGA---------AAATTT--AAAGTGA
droKik1 scf7180000302486:355234-355356 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTCGGTGTGTGGCGG-TGGTTTTTATTTGT--TTT---CGGTGAAAAATT-CAAAAAAC--CTGGCACTCAAGTAC-----ACAATTTAGCCAAAAAAATAAGTA--AGCCATATG---TTTCAAC---------AAATTT--AAAGTGC
droAna3 scaffold_13337:2622677-2622793 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCGGGTTGTTTTTTTGTTT----TCGTTGGATTT--TTC-GAAAA--CC--ACAAGAA--TATATTCGCGAAGGCC--------TAAGCCAAAC--CGCGCCAAC---GACAGGCACTTTTTAAGAATTAAAAAGGTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACTCAGTTCCGAACGGGCAAAAAACAATTTAGCGCCCTCT------------------GAAACGCTCT----GTGTTTTATTTTCCACTTAAAA-TATTAAA-AAAAATGCATA-----A--------AAATTGCACACGTCGCTGATAACTCGCT-GGTATACTTATTGTCT-----------------A-AAATA-----CTGGCTTTTCCTTTC-AAATCATTTGGAAAAT------ATGACATGA---TAAGTGAACAGTAGCCGCGCCGAGAATTT-TTGGATGAGTGGCGG-CTGTTATTCCGTTTATTTT---TGAGTTTGTCTT-AAAAA--CC--CCAAGCG--CATAA-----ACAATT--------AAAGTCAGAC--AACACCATC---GTTAAAC---------GAATTA--AAAGTGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................AC---------GAATTA--AAAGTGA15237.50750000005121111000000
.................................GCCCTCT------------------GAAACGCTCT----G.......................................................................................................................................................................................................................................................................................................................................................................1813.00330000000000000000
......TTCCGAACGGGCAAAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................1913.00310200000000000000
................................................................................................................................................................................................................................................ATGACATGA---TAAGTGAACAGTAGCC....................................................................................................................................................................2512.00202000000000000000
.......................ACAATTTAGCGCCCTCT------------------GAAACGC...............................................................................................................................................................................................................................................................................................................................................................................2412.00200000200000000000
........................................................................................................................................CACGTCGCTGATAACG........................................................................................................................................................................................................................................................................................1612.00200000000020000000
..........................ATTTAGCGCCCTCT------------------GAAACGCT..............................................................................................................................................................................................................................................................................................................................................................................2212.00210100000000000000
...........AACGGGCAAAAAACAATT...................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.........................AATTTAGCGCCCTCT------------------GAAACG................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAAGTCAGAC--AACACCATC---G..............................2011.00100000100000000000
.....................AAACAATTTAGCGCCCTC.........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.................................GCCCTCT------------------GAAACGCTCT----GTGC....................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TCAGAC--AACACCATC---GTTAAAC---------GAA............2511.00100000010000000000
.....................................................................................................................................GCACACGTCGCTGATAACTCGCT-GGT................................................................................................................................................................................................................................................................................2611.00101000000000000000
....................................................................................................................................TGCACACGTCGCTGATAACTCGCT-GGG................................................................................................................................................................................................................................................................................2711.00101000000000000000
.........CGAACGGGCAAAAAACAATTTAGC...............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.................................................................................................................A-----A--------AAATTGCACACGTCGCTGATAACT........................................................................................................................................................................................................................................................................................2611.00100100000000000000
.....................................................................................................................................GCACACGTCGCTGATAACTCGCT-GGC................................................................................................................................................................................................................................................................................2611.00101000000000000000
................................................................................................................................................................ATACTTATTGTCT-----------------A-AAATA-----CT....................................................................................................................................................................................................................................2111.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................TTTT---TGAGTTTGTCTT-AAAAA--CC--CC......................................................................................2511.00100010000000000000
........................................................................................................................................CACGTCGCTGATAAC.........................................................................................................................................................................................................................................................................................1511.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................C--CCAAGCG--CATAA-----ACAATT--------AAAGTCAGA..............................................2811.00100000001000000000
................................................................................................................................................................................................................................TTTGGAAAAT------ATGACATG........................................................................................................................................................................................1811.00110000000000000000
.........................................................................................................................................ACGTCGCTGATAACG........................................................................................................................................................................................................................................................................................1530.33100000000010000000
........................................................................................................................................CACGTCGCTGATAACGA.......................................................................................................................................................................................................................................................................................17170.24400000000040000000
droSec2
ACTCAGTTCCGAACGAGCAAAAAACAATTTAGCGCCCTCT------------------GAAACGCTCT----GTGTTTTATTTTCCACTTAAAA-TATTAAAAAAAAATTCATA-----A--------AAATTGCACACGTCGCTGATAACTCGCTCGGTATACTTATTGCCT-----------------A-AAATA-----CTGGCTTTTCCTTTC-AAATCATTTGGAAAAT------ATGACATGATATTAAGTGATTA--AGCCGCGCCGAGAATTT-TTCGATGAGTGACGG-CTGTTTTTCCGTTTATTTT---TGAGTTTGTCTT-AAAAA--CC--CCAATCG--CATAA-----ACAATT--------AAAGTCGGAC--AACACCATC---GTTAAAC---------GAATTA--AAACTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................GCCCTCT------------------GAAACGCTCT----G.......................................................................................................................................................................................................................................................................................................................................................................1813.0030030
.....................................................................................................................................................................................................................................................................................ATTT-TTCGATGAGTGACGG-C.....................................................................................................................................2011.0010100
.................................GCCCTCT------------------GAAACGCTCT----GTGTTTTATT..............................................................................................................................................................................................................................................................................................................................................................2711.0011000
.....................................................................................................................................................................................................................................................................................ATTT-TTCGATGAGTGACGG-CT....................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................................................ATGAGTGACGG-CTGTTTTTCC............................................................................................................................2111.0011000
.......TCCGAACGAGCAAAAAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................GTTTATTTT---TGAGTTTGTCT.....................................................................................................2011.0010100
................................................................................................................TA-----A--------AAATTGCACACGTCGCTGATAACT........................................................................................................................................................................................................................................................................................2711.0010010
.....GTTCCGAACGAGCAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..........................................................................................................................................................................................................................................................ATTAAGTGATTA--AGCCGCGCCGAGA...........................................................................................................................................................2511.0010100
........................................................................................................................................................................................................................................................ATATTAAGTGATTA--AGCCGCGCCGAGA...........................................................................................................................................................2711.0010010
.......................ACAATTTAGCGCCCTCT------------------GAAACGCT..............................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.......................ACAATTTAGCGCCCTCT------------------GAA...................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................ACAATTTAGCGCCCTCT------------------GA....................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
........................CAATTTAGCGCCCTCT------------------GAAACG................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
...........AACGAGCAAAAAACAATTTAG................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
dm3
ACTCAGTTCCGAACGGGCAAAAAACAATTTAGCGCCCTCT------------------GAAACGCTCT----GTGTTTTATTTTCCACTTAAAA-TATTAAA--AAAGTGCATA-----A--------AAATTGCACACGTCGCTGATAACTCGCTCGGTATACTTATTCTCT-----------------A-AAATA-----CTGTCT------TTC-AAATCAGTTGGAAAAT------ATGACATGATAATAAGTGAACAATAGCCGCGCCGAGAATTT-TTCGACGAGTGACGG-CGGTTATTCCGTTTTTTAT---TCAGTTTTTCTT-AAAAA--AC--CCAAGCG--CATAA-----ACAATT--------AAAGTCGGAC--AACACCATC---GTTAAAT---------GAATTA--AAAGTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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............................................................................................................................................................................................................................................................................................................GTTATTCCGTTTTTTAT---TCAG............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................AGTTGGAAAAT------ATGACATGATAA....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAAACAATTTAGCGCCCT..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TCAGTTGGAAAAT------ATGACATGATA.....................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................ACAATAGCCGCGCCGAGAA..........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................A-----ACAATT--------AAAGTCGGAC--AACACCATC---GT.............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................CT------TTC-AAATCAGTTGGAAA........................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
......TTCCGAACGGGCAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................ACAATTTAGCGCCCTCT------------------GAAACG................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AGTTCCGAACGGGCAAAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AATTGCACACGTCGCTGATAACTC.......................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CAATT--------AAAGTCGGAC--AACACCATC---GTT............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................GAATTT-TTCGACGAGTGACGG-......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TAA-----ACAATT--------AAAGTCGGAC--AACACCATC---GT.............................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AAATTGCACACGTCGCTGATA...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CACACGTCGCTGATAACT........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TTATTCCGTTTTTTAT---TCAGT...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................AAAA--AC--CCAAGCG--CATAA-----ACAATT--------.......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTAAAA-TATTAAA--AAAGTGCA................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AATCAGTTGGAAAAT------ATGACATGA.......................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GCCCTCT------------------GAAACGCTCT----C.......................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCCGAACGGGCAAAAAACAATTTAGCGCC............................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................CT------------------GAAACGCTCT----GTGTTTTATTTTCC..........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAAAAAACAATTTAGCGCCCTCT------------------GA....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................ACAATTTAGCGCCCTCT------------------GAAACGC...............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CCGAACGGGCAAAAAACAATTTAGCGCC............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCCGAACGGGCAAAAAACATC....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GAATTT-TTCGACGAGTGACGG-C.....................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATTTAGCGCCCTCT------------------GAAACGCTC.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTCAGTTCCGAACGGGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ACACCATC---GTTAAAT---------GAATTA--AAAGTG.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAAGTCGGAC--AACACCATC---GT.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GCCCTCT------------------GAAACGCTCT----GTGTA...................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
ACTCAGTTCCGAACGGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATTTAGCGCCCTCT------------------GAAAC.................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................TTAGCGCCCTCT------------------GAAACGCTCT----GT......................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACAATTTAGCGCCCTCT------------------GAAA..................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AAACAATTTAGCGCCCTCT------------------GAAACG................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATTTAGCGCCCTCT------------------GAAACGC...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................AACTCGCTCGGTATACTTATTC......................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CCGAGAATTT-TTCGACGAG.............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AACAATTTAGCGCCCTC.........................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACTCGGTTCCGAACGCGCAAAAAACAATTCAGCGCACTCT------------------GAAACGCGCT----GTGTATC--GTACCACTTAAAATTAA-ACA-AAAAATACATA-----A--------AAATTGCACACGTCGCTGATAAATCGCACGGTAAACTAATCATTT-----------------C-AAATA-----CCGCCTTTCTATTTC-AAATCGGTTAAAAAAT------ATGACATGATAATAAGTGAACAGTAGCCGCGCCGAGAATT-----GATGAGTGGCGG-CGGCTATTCTGTTG-TTCT---TTAGTT---CTT-AAAA----------AGCG--CATAA-----ACAAAT--------ACATGCAGAC--AACACCGTT---GTTAAAC---------GAATTG--AAAGTGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................TAA-----ACAAAT--------ACATGCAGAC--AACACCGTT---...............................2811.0011000000
.......................................................................................................................................................................................................................................................GATAATAAGTGAACAGTAGC.....................................................................................................................................................................2011.0010000100
.........................................................................................................................................................................ATTT-----------------C-AAATA-----CCGCCTTTCC............................................................................................................................................................................................................................2011.0010100000
.............................................................................................................................................................................................................................................................................CGCCGAGAATT-----GATGAGTGGCGG-CGGC..................................................................................................................................2711.0010100000
...............................................................................................................................................................................................................................................................GTGAACAGTAGCCGCGCCGAGAATT-----GA.................................................................................................................................................2711.0010000100
....................................................................................................................................TGCACACGTCGCTGATAAATCGCA....................................................................................................................................................................................................................................................................................2411.0010000010
..............................................................................................................................................................................................................................................................................GCCGAGAATT-----GATGAGTGGC.........................................................................................................................................2011.0010001000
.......................................................................................................................A--------AAATTGCACACGTCGCTGAT............................................................................................................................................................................................................................................................................................2111.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................GTT---GTTAAAC---------GAATTG--AAAGTGA2311.0010000010
.................................................................................................................................................GATAAATCGCACGGTAAACTA..........................................................................................................................................................................................................................................................................2111.0010000010
.....................AAACAATTCAGCGCACTCT------------------G.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
................................................................................................................................................................................................................................................................................CGAGAATT-----GATGAGTGGCGG-CGGC..................................................................................................................................2411.0010000010
.................................................................................................................................AATTGCACACGTCGCTGATA...........................................................................................................................................................................................................................................................................................2011.0010100000
...........................................................................................................................................................................................................................................................................CGCGCCGAGAATT-----GATGAGTGGCGG-CGGC..................................................................................................................................2911.0010100000
..............................................................................................................................................................................................................................................................................GCCGAGAATT-----GATGAGTGGCGG-CGGC..................................................................................................................................2611.0011000000
..................................................................................................................................................................................................................................................................................................................................................................ATAA-----ACAAAT--------ACATGCAGA..............................................1911.0010001000
droYak3
ACTCAGTTTCGAACGAGCAAAAAACAATTTAGCGCCCTCT------------------GAAACGCTCT----GTGTATCATT-CTCAATTAAAA-TATTAAA---AAATACATA-----A--------AAATTGCACACGTCGCTGATAAATCTAACGGTACACTTATCATCT-----------------A-AAATA-----CAGGCTTTCGCTTTC-AAATCTGTTGAAAAAT------ATGACATGATAATAAGTGAACAGTAGCCGCGTCGAAAATGG-TTCGATGAGTGGCGG-CGGCTATTCTGTTG-TTTT---TTAGTT---CTT-TAAAA--AA--CTAAGTG--CATAA-----ACAATT--------AAAGTCAGACGCAACATCATT---GTTAAAT---------GAGTTT--AAAGTGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................AACAATTTAGCGCCCTCT------------------GAAACG................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.............................................................................................................ACATA-----A--------AAATTGCACACGTCGCT...............................................................................................................................................................................................................................................................................................2311.00100100000000
...................................................................................................................................................................................................................................................................................AAATGG-TTCGATGAGTGGC.........................................................................................................................................1911.00100000010000
..........................................................................................................................................................................................................................................................AATAAGTGAACAGTAGCCGCGTCGA.............................................................................................................................................................2511.00100000010000
...............................................................................................................................................................................................................................................................GTGAACAGTAGCCGCGTCGAA............................................................................................................................................................2111.00100000010000
.......................................................................................................................................ACACGTCGCTGATAAATCTAACGGTAC..............................................................................................................................................................................................................................................................................2711.00100100000000
..............................................................................................................................................................................................................................................................AGTGAACAGTAGCCGCGTCGAA............................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................................................................................................AGTGAACAGTAGCCGCGTCG..............................................................................................................................................................2011.00100000010000
...................................CCTCT------------------GAAACGCTCT----GTG.....................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.............................................................................................................................................................................................................................................................AAGTGAACAGTAGCCGCGTC...............................................................................................................................................................2011.00100000010000
.................................GCCCTCT------------------GAAACGCTCT----G.......................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000
..................................................................................................................................................................................................................................................................................................................................................................ATAA-----ACAATT--------AAAGTCAGACGCA..........................................2311.00100000001000
.........................AATTTAGCGCCCTCT------------------GAAA..................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.................................................................................................................................................................................................................................................................GAACAGTAGCCGCGTCGAAAATGG-TTC...................................................................................................................................................2711.00100000010000
.............................................................................................................................................................................................................................................................AAGTGAACAGTAGCCGCGTCGA.............................................................................................................................................................2211.00100000010000
......................................CT------------------GAAACGCTCT----GTGTATC.................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.................................................................................................................................................................................................................................................................................GAAAATGG-TTCGATGAGTGGCGG-CGGC..................................................................................................................................2711.00100000010000
droEug1
TCTCAGTTCCAAGCGAGCAA---ACAATTTAGCACCCTCT------------------------------------TTTCATTCCCAGTTGGAATTATTAAT---AATTATATA-----T--------ATTTAACAAAG------GATTAACTGTTGGGCACAAATATCTAGC-----------------AAAAGTA-----C-GTCCTTAAATTTCAAAAACGGTTA-AAATT------ATGACTTGGTAATAAAAGAAAGGAAGCCGCGCGGTAAATTTGTTCGATGAGTAGCGG-CGGTTTTTCTCCTT-TTTT---TAAGTTATTCCT-TAAAA--A---AAGTACG--CATAA-----ACAATA--------ATACTCAAAA--A-AAACAAC---ATAAAAC---------AAATAC--AAAGTGASizeHit CountTotal NormTotal
No Reads
droBia1
A-----------------------CAATTTTGCACCCTCT------------------GAGACGCGCTGCTCGTGTTT--TTCCCCACTTGAAATTGT-TTA-AAGTATATATT-A---A--------AAAACACAGTCGTCGGTGACTTTTCGCG-GGTAAAGTAGTGAAGC-----------------A-ACATATGTAGCTTGTTTTCGCTTTC-AAAACTGCTA-CGGTT------ATGCCATGATGCCAAATGAGTTATATCCG-GCTGATA------------------------------------TTAG---TTTATTTATCAT-CAAAA--A---CGCAACT--CATAA-----ACAATA--------ATAT---AAC--AGCAACATATGGATAAAAC---------CAGTGC--AAAGTGASizeHit CountTotal NormTotal
No Reads
droTak1
AA---GT-ATAAACGCTC-----ACATTTTAGCACCCTTT------------------GAAACGCGCAGCTTGTGTTT--TTCCCGACTTAAAAATAT-AAA-AAGAATATATCTAAAAA--------GAAACGCAGTCGACGCTGACTTATCGCCGGTTACAAA-AT--------CGAAATCGTGAAGTAATATTA-----CTGGCTTTCGATTTCCAAAACGATTT-GAGTT------ATGACATGATACTCAATAAATTATAGCCGCGCGGTAAAATT-ATCTACGAGTGGCGG-CGGTACTTAGGTTT--TTT---TTATTTATTCTT-CAAGAGAA--ACAAAACG--CATAA-----ACAATA--------GTAGCCAAAC--AACAACAAA----TGAAAG---------AATTTT--AAAGTGASizeHit CountTotal NormTotal
No Reads
droEle1
TTTGAATTTCAT---------------------------T------------------TAGACGCGCTACTCGTGTTTTCTTTCCCACTTAAAAATATTAAA---AAATATATCTAAAAAAAGGAAGCAAATAACATCCGGTGTCAGTACATCTTTGTATGTAATTTTCTACTGAT-----------------AATA------TAGTTACCGTTATT-AAAATTGTTG-AAATTATTGAAATTACACGATGATAAATAATTTATAACCGCGCAGTGGTTTT-TCCGTTTTGTGGCGT-CGGTTTTTATGTTT---TT---TAAGTAAATGTT-AAAAA--GCAGCATTACT--CATAA-----ACAATA--------ATAATCATTC--GTCAACAAA---TAAAACC---------GAAATA--AAAGTGASizeHit CountTotal NormTotal
No Reads
droRho1
---------CGAACGAGCA--------TTTAGCACCCTCTCACTCTGTGAATTTCACTTAGACGCGCTGCTTGTGTTTTCTTTCCCACTTAAGAATATTAAA---AAATATATA-AAAACTAGGAAA-AAATAGCAATCGTTGTCAGTATAACGCCGTTTACAATTTTCTACTAATT----------------GATA-----CTGTGTACAGC---T-AAAACTGTTG-AAATT------ATGACAAGATGTTAAATAAATTTTAACCGCGCTGTGGTTTT-TTCGATGAGTGGTGG-CGGTTTTTATGTTT--TTT---TAAGTTTATATTTAAAAAAAA--ACATTACG--CATAA-----AAAA----------AGAATCTTAC--GGCAACAAA---TCAAAAC---------ATATAC--AAAGTGASizeHit CountTotal NormTotal
No Reads
droFic1
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTAGTGAAAAATAGCCGCGCGGCGGTTTT-TTCGATTAGGGGCGC-TGATTCTTTC-----TGTT---TAAGTTAATAAT-AAATA--AC--AA---------------------A---------AAAATTAAAA--AACAACATA---ATTAAGA---------AAATTT--AAAGTGASizeHit CountTotal NormTotal
No Reads
droKik1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTCGGTGTGTGGCGG-TGGTTTTTATTTGT--TTT---CGGTGAAAAATT-CAAAAAAC--CTGGCACTCAAGTAC-----ACAATTTAGCCAAAAAAATAAGTA--AGCCATATG---TTTCAAC---------AAATTT--AAAGTGCSizeHit CountTotal NormTotal
No Reads
droAna3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCGGGTTGTTTTTTTGTTT----TCGTTGGATTT--TTC-GAAAA--CC--ACAAGAA--TATATTCGCGAAGGCC--------TAAGCCAAAC--CGCGCCAAC---GACAGGCACTTTTTAAGAATTAAAAAGGTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................TAAGCCAAAC--CGCGCCAAC---GACAGGCACT.....................2911.001010000
.......................................................................................................................................................................................................................................................................................................................................................................CGCGAAGGCC--------TAAGCCAAAC--C..........................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................CAAGAA--TATATTCGCGAAGGCC--------.......................................................2211.001010000

Generated: 05/18/2015 at 10:24 AM