ID:

dsi_7787

 Coordinate:

3l:11833018-11833167 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_11833168_11833293_+]; exon [3l_11833168_11833293_+]; intron [3l_11832051_11833167_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATGCCAATGTACTTAACAAATGAAATTTCTCTGATTCATGTCTATTCACTTACTCAAACTCAATCCGAACTAAACTTGTTGCCTCAGGCCGTCAAAATACTTAACTGAAAGCATTACTTGTAAGATTACGTTTTTGGAATACCAGTCCGCGCCAGGGAAACCTACGAGATTTATAAATGCCTTCCTCTCGCACCCCAAGGTCCCGCCATCAATCCGATCGTCGATAACTCGGACGAGCCCCAACCCAGT
**************************************************........................((..(((((.((((.................))))..)))..))..)).......(((..((((....))))...)))..(((....))).(((((................))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902008
ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
................................................................................................................................................................................................................................ATATCCCGGACGAGCCCCCA...... 20 3 3 61.33 184 56 40 31 22 5 16 0 12 0 0 1 1
................................................................................................................................................................................................................................ATATCCCGGACGAGCCCC........ 18 2 10 1.20 12 0 1 6 1 1 0 1 2 0 0 0 0
....................................................................................................................................................................................................................ATCCGATCGTCGATAACT.................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AACCCGGACGAGCCCCCA...... 18 2 4 1.00 4 0 0 0 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCAATCCGATCGTCGATAACTCGGA................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTCGATAACTCGGACAAGCCC......... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGATAACTCGGACGAGCCC......... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................AAGGTCCCGCCATCAATCCGATCGT............................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................ACTCGGACGAGCCCCAACC.... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATATCCCGGACGAGCCCCAA...... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATCAATCCGATCGTCGAT........................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTCGATAACTCGGACGAGCCCCCACCCA.. 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................CGATAACTCGGACGAGCCCCAACC.... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATATCCCGGACGAGCCCCCAC..... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AACTCGGACGAGCCCCAACCC... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................TTCCTCTCGCACCCCAAA.................................................. 18 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................AGGTCCCGCCATCAATCCGATCGTC........................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................TCCGAACTAGACTTGTTGCCC..................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGTCCCGCCATCAATCCGATCGT............................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................ATATCGCGGACGAGCCCC........ 18 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATATCCCGGACGAGCCCCC....... 19 3 17 0.76 13 1 0 10 0 0 0 0 2 0 0 0 0
.....................................................................................................................................................................................................................................CCGGACGAGCCCCCACCC... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATCCCGGACGAGCCCCCACC.... 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATCCCGGACGAGCCCCAA...... 18 2 10 0.30 3 2 0 0 1 0 0 0 0 0 0 0 0
...........................TTCTCTGATGCATCGCTATT........................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTTCGGACGAGCCCC........ 15 2 20 0.10 2 0 0 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................TATCCCGGACGAGCCCCTA...... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGTCGGACGAGCCCCCA...... 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
........................AATTTCTCGGATTCATTT................................................................................................................................................................................................................ 18 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................TAACTGACAGCATTCCT................................................................................................................................... 17 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACCCCGGACGAGCCCC........ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CCCGGACGAGCCCCTA...... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................TCCCGGACGAGCCCCAA...... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATCGTCGATCACTGGG................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CTACGGTTACATGAATTGTTTACTTTAAAGAGACTAAGTACAGATAAGTGAATGAGTTTGAGTTAGGCTTGATTTGAACAACGGAGTCCGGCAGTTTTATGAATTGACTTTCGTAATGAACATTCTAATGCAAAAACCTTATGGTCAGGCGCGGTCCCTTTGGATGCTCTAAATATTTACGGAAGGAGAGCGTGGGGTTCCAGGGCGGTAGTTAGGCTAGCAGCTATTGAGCCTGCTCGGGGTTGGGTCA
**************************************************........................((..(((((.((((.................))))..)))..))..)).......(((..((((....))))...)))..(((....))).(((((................))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
........................................................................................................................................................................................GGAGAGCGTGGGGTTC.................................................. 16 0 1 5.00 5 5 0 0 0 0 0 0
.......................................................................................................................................ACCTAATGGTCAGGCCCG................................................................................................. 18 2 2 3.00 6 0 0 6 0 0 0 0
........................................................................................................................................................................................GGAGAGCGTGGGGTT................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................GAGAGCGTGGGGTTC.................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0
.................................................GAATGAGTTTCAGTTATGC...................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0
...............................................GTGAATGAGTTTGAGTTAGGC...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................TTTTATAAATTGACTGTCATAAT..................................................................................................................................... 23 3 2 0.50 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................AGAGCGTGGGGGTCC................................................. 15 1 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................................................................................GGAGAGCGTTGGGTTC.................................................. 16 1 9 0.33 3 2 0 0 0 0 1 0
...................................................ATGAGTTTCAGTTATGCT..................................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0
................................................CGAATGAGTTTCAGTTATGC...................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1
........................................................................................................................................................................................GGAGAGCGTGGGGTTCG................................................. 17 1 11 0.18 2 0 2 0 0 0 0 0
.........................................................................................................................................................................................GAGGGCGTGGGGTTC.................................................. 15 1 12 0.17 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................TGGAGAGCGTGGGGTT................................................... 16 1 13 0.15 2 0 2 0 0 0 0 0
.........................................................................................................................................................................................................AGTGCTGTAGATAGGCTAG.............................. 19 3 7 0.14 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................GGGTAGTTAGGCTAGC............................. 16 1 7 0.14 1 0 0 0 0 1 0 0
..................................................................................................................................................................GATGCTCGAAAAATTTAC...................................................................... 18 2 8 0.13 1 1 0 0 0 0 0 0
............................................................AGTTAGGCGTGATTT............................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 1 0 0
........................................................................................................................................................................................GGAGAGCGTTGGGTTCC................................................. 17 1 9 0.11 1 0 0 0 0 1 0 0
........................................................................................................................................................................................GGAGGGCGTGGGGTT................................................... 15 1 20 0.10 2 0 0 0 0 1 1 0
..............................................................TTAGGCTTGATGTTAAC........................................................................................................................................................................... 17 2 20 0.10 2 0 2 0 0 0 0 0
...................................................ATGAGTTTCAGTTATGC...................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 1 0
...................................................................................................TCAATTGAATTGCGTAATG.................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
....................................AGTACAGAGAAGTGG....................................................................................................................................................................................................... 15 2 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:38 AM