ID:

dsi_778

 Coordinate:

2r:11933887-11934036 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.6 -21.4 -21.4 -21.4

Flybase annnotation

Antisense to three_prime_UTR [2r_11932949_11935544_+]; Antisense to exon [2r_11932047_11935544_+]

No Repeatable elements found

Sense Strand Reads

TGCCGATTCGCATCTCGGGTAAATGTACAGTAACACATATATGGTTTACATGCGACAATTGCTCATGCTCTACCATCGCTCTCTTATGCGTCGCTTTAATTAAAATGAATAATGGGATCGAGAACTGTCGAGCCTATGTACAGGATTCGTGGGGACGTGTTCGTGTAGGCGGTAATACAATATTATAATTTCATACGTAGCAACAAAAATGGTCTAATCGTCGATCTAAAACACAGGGAATAAGTTAAGC
********************************************************************************((...(((((((.((................(((((.((((......)))).))))).............)).)))))))..........))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...................................................................................................................................................................................................TGTAGCAACAAAGATGGTCTA.................................. 21 2 1 29.00 29 29 0 0 0 0 0 0 0 0 0
................................................................................................................................CGATCCTACGTACAGGA......................................................................................................... 17 2 4 18.50 74 0 74 0 0 0 0 0 0 0 0
.......................................................................................................................................................GGGACGTGTTCGTGTAGGCGG.............................................................................. 21 0 1 16.00 16 16 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATGTAGCAACAAAGATGGTCT................................... 21 2 1 10.00 10 10 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACGTGTTCGTGTAGGCGGTA............................................................................ 21 0 1 9.00 9 9 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATATGTAGCAACAAAGATGGT..................................... 21 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACGTGTTCGTGTAGGCGGTTT........................................................................... 22 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGGATTCGTGGGGACGTGTT......................................................................................... 21 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGTAGCAACAAAGATGGTCT................................... 20 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
....................................................................................................TAAAATGAATAATGGTATCGA................................................................................................................................. 21 1 1 6.00 6 0 0 0 6 0 0 0 0 0 0
...............................................................................................................................................................................................CATATGTAGCAACAAAGATGG...................................... 21 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
................................................................................................................................CGATCCTACGTACAGG.......................................................................................................... 16 2 10 5.00 50 0 50 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGGGA............................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGTGTTCGTGTAGGCGGTAAT.......................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCATATGTAGCAACAAAGATGG...................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATGTAGCAACAAAGATGGTC.................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACGTGTTCGTGTAGGCGGTAA........................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATGTAGCAACAAAGATGGTCTAAT................................ 25 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTACAGGATTCGTGGGGACGC............................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCATATGTAGCAACAAAGATGGTC.................................... 25 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0
................................................................................CTCTTATGCGTCGCTTTAATT..................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTACAGGATTCGTGGGGACGT............................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAGATGGTCTAATTGTCGAT......................... 21 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAATTTCATATGTAGCAACAAAGATGG...................................... 27 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTACAGGATTCGTGGGGAC.............................................................................................. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCATATGTAGCAACAAAGATGGT..................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................TAATTAAAATGAATAATGGTATCGAGAAC............................................................................................................................. 29 1 1 2.00 2 0 0 1 0 1 0 0 0 0 0
.....................................................................................................................................................TGGGGACGTGTTCGTGTAGGCGGTAA........................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................CGAGCCTATGTACAGGATTCGTGGAGA............................................................................................... 27 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................CTATGTACAGGATTCGTGGGG................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................CGAGCCTATGTACAGGATTCGTGGGGA............................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................TGGGGACGTGTTCGTGTAGGCGGTAAT.......................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TACAGGATTCGTGGAGACTTG........................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TACAGGATTCGTGGAGACGTGC.......................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTACAGGATTCGTGGGGAC.............................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAGATGGTCTAATTGTCGA.......................... 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................TCTTATGCGTCGCTTTAATTA.................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GGGACGTGTTCGTGTAGGCGGT............................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGACGTGTTCGTGTAGGCGGTT............................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGTGTTCGTGTAGGCGGTAAT.......................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGTGTTCGTGTAGGCGGTAT........................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCATATGTAGCAACAAAGATGGTCTA.................................. 26 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................CAGGATTCGTGGGGACGTG........................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TACAGGATTCGTGGAGACGT............................................................................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATGTAGCAACAAAGATGGTCTT.................................. 22 3 2 2.00 4 4 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTAAAACACAGGAAATAAGTTAAG. 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGAGACGT............................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATATGTAGCAACAAAGATGGTTT................................... 23 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TACAGGATTCGTGGAGACGTG........................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGAGACGTGT.......................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACAGGATTCGTGGGGACGTG........................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGTACAGGATTCGTGGGGA............................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACGTGTTCGTGTAGGCGGTAT........................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGTGTTCGTGTAGGCGGTAT........................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACGTGTTCGTGTAGGCGGTTTT.......................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGAGACGTG........................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACAGGATTCGTGGGGACGTGT.......................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGTAGCAACAAAGATGGTCTAA................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................GATCCTACGTACAGGA......................................................................................................... 16 2 19 1.05 20 0 20 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACGTGTTCGTGTAGGCGGTT............................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GTGTTCGTGTAGGCGGTAATA......................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGTGTTCGTGTAGGCGGTTT........................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGTTCGTGTAGGCGGTAATT......................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................GTGGTATCGAGAACTGTCGAGG..................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................TCATATGTAGCAACAAAGATGGTCTAAT................................ 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................GACCTGTTCGTGTAGGCGGTTT........................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGACGTGTTCGTGTAGGCGTA............................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGCGTTCGTGTAGGCGGTAAA.......................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGTGTTCGTGTAGGCGGTATT.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTCGTGTAGGCGGTAAT.......................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................ATGAATAATGGTATCGAGAAC............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATGTAGCAACAAAGATGGCCTAA................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................ATAATGGTATCGAGAACTGTC......................................................................................................................... 21 1 2 1.00 2 0 0 0 0 0 2 0 0 0 0
..................................................................................................................................................................................................ATGTAGCAACAAAGATGGTCTA.................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TAATTGTCGATCTAAAACAC................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGTTCGTGTAGGCGGTAATA......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................ATAATGTTATCGAGAACTGTCGAGCCT................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................CGTGTTCGTGTAGGCGGTATT.......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AGAACTGTCGAGCCTATGTACA............................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................GAAGTGTTCGTGTAGGCGGTATT.......................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACGTGTTCGTGTAGGCGTT............................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGACGTGTTCGTGTAGGCGG.............................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGGGGACGTGTTCGTGTAG.................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATATGTAGCAACAAAGATGGTCTA.................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GGGACGTGTTCGTGTAGGCGTT............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................AAATGAATAATGGTATCGAGAACTG........................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GGGACGTGTTCGTGTAGGCGAT............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATGTAGCAACAAAGATGGT..................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGTGTTCGTGTAGGCGGTT............................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGAGACGTGTTT........................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TGAATAATGGTATCGAGAAATGTCGA....................................................................................................................... 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................CACTCTTATGCGTCGCTTTA........................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCATATGTAGCAACAAAGATGG...................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCATATGTAGCAACAAAGATGGTCT................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGGGGACGTGTTCGTGTAGGCG............................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TACAGGATTCGTGGGGACGTT........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GAAGTGTTCGTGTAGGCGGTA............................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGGATTCGTGGGGACGTGTTTA....................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCAACAAAGATGGTCTAATTGTCG........................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGTTCGTGTAGGCGGTATTT......................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGGTT............................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGTGTTCGTGTAGGCGGTAA........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGTAGGCGGTAATACAATATT.................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGGATTCGTGGAGACGTGTT......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGACGTGTTCGTGTAGGCGGTTT........................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACAGGATTCGTGGAGACGTGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATGTAGCAACAAAGATGGTCTA.................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GGGGACGTGTTCGTGTAGGCGTA............................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TAATGGTATCGAGAACTGTCGAGCC.................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................CAACAAAGATGGTCTAATTGTCGAT......................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TGTAGCAACAAAGATGGTCTT.................................. 21 3 3 1.00 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................TGAATAATGGTATCGAGAACT............................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGTGTTCGTGTAGGCGGTAATACAATA.................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAACACAGGAAATAAGTTAAG. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGTGTTCGTGTAGGCGGTTTT.......................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GGGACGTGTTCGTGTAGGCGGTT............................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CATATGTAGCAACAAAGATGGTC.................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCATATGTAGCAACAAAGATGGTCTAA................................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGTTCGTGTAGGCGGTAATACAATATT.................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTACAGGATTCGTGGGGACGTGTT......................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGTAGCAACAAAGATGGTCTAATT............................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CGTGGGGACGTGTTCGTGTAGGCGG.............................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................GAATAATGGTATCGAGAACTGTCG........................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GGGACGCGTTCGTGTAGGCGG.............................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CGTGGGGAAGTGTTCGTGTAG.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGGG................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGCAACAAAGATGGTCTAATTGTCGA.......................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGGATTCGTGGGGACGTGTTT........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TACAGGATTCGTGGGGACGT............................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GGGGACGTGTTCGTGTAGGCG............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CATATGTAGCAACAAAGATGGT..................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTACAGGATTCGTGGGGA............................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCATATGTAGCAACAAAGATGGTCT................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACAGGATTCGTGGGGACGTGTT......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................ACTCTTATGCGTCGCTTTAA....................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TGAATAATGGTATCGAGAACTGT.......................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................ACAGGATTCGTGGAGACGTGA.......................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCATATGTAGCAACAAAGATGGTC.................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................TATGTGTCGCTTTAATTAAAATGAATA........................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TGTAGCAACAAAGATGGTC.................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTCGTGTAGGCGGTAATACAATAA................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGGATTCGTGGGGACGTGTTA........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................ATGAATAATGGTATCGAGAACTG........................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTACAGGATTCGTGGGGA............................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGGAGACGTGTTCGTGTAGGC................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TAGGCGGTAATACAATATTATAATT............................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTACAGGATTCGTGGAGACGTGTTA........................................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGTGTTCGTGTAGGCGGTA............................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................CCTATGTACAGGATTCGTGGA................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GAGACGTGTTCGTGTAGGCGGAT............................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGTGTTCGTGTAGGCGGTAA........................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTACAGGATACGTGG.................................................................................................. 16 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................CTATGTACAGGATTCGTGGGGT............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................TTAAAATGAATAATGGTATCGAGAAC............................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................AAATATGAATAATGGTATCGAGAAC............................................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................ACAGGATTCGTGGAGACGTG........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGGATTCGTGGGGACGTGTTC........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CATGTTCGTGTAGGCGGTATTT......................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TCGTGGGGACGTGTTCGTGTAGGCGG.............................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGGGACGTG........................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................AATAATGGTATCGAGAACTG........................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGTACAGGATTCGTGGGGATGTGT.......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TACAGGATTCGTGGGGACGTAAA......................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGTACAGGATTCGTGGGGATT............................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGACGTGTTCGTGTAGGCGGT............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGTGTTCGTGTAGGCGGTATTT......................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................TAAAACTGAATAATGGTATCG.................................................................................................................................. 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATATGTAGCAACAAAGATGGTT.................................... 22 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0
......TTCGCATCTCGGGTAAATGTACAA............................................................................................................................................................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GGGAAGTGGTCGTGTAGGCGGA............................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATATGTAGCAACAAAGATGG...................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTATGTACAGGATTTGTGGTT................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGTAGCAACAAAGATGGTCTAT................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GATGGTCTAATTGTCGATCTT...................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTAAAACACAGGGC........... 15 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................TATCTAAAACACAGG............. 15 1 7 0.29 2 0 0 0 0 0 0 0 2 0 0
..........................................................................................................................................................ACGTGTTCGTGTAGGCGTTTT........................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTACAGGATTCGTGGGGTTT............................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTACAGGATAGGTAGGG................................................................................................ 18 3 20 0.15 3 0 0 0 0 0 3 0 0 0 0
...............................................................................................................................................................................................................................ATCTAAAACACAGGA............ 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTATCTAAAACACAGGG............ 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................AAGTAAAATCAATAAAGGGAT.................................................................................................................................... 21 3 17 0.12 2 0 1 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................TATCTAAAACACAGGGC........... 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................TGTACAGGATAGGTGG.................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................AATATGGTGTAAACGTCGA.......................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
ACGGCTAAGCGTAGAGCCCATTTACATGTCATTGTGTATATACCAAATGTACGCTGTTAACGAGTACGAGATGGTAGCGAGAGAATACGCAGCGAAATTAATTTTACTTATTACCCTAGCTCTTGACAGCTCGGATACATGTCCTAAGCACCCCTGCACAAGCACATCCGCCATTATGTTATAATATTAAAGTATGCATCGTTGTTTTTACCAGATTAGCAGCTAGATTTTGTGTCCCTTATTCAATTCG
******************************************************************************((...(((((((.((................(((((.((((......)))).))))).............)).)))))))..........))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 O002
Head
 GSM343915
embryo
................................................GTACGCTGTTAACGAGTACGAGATGGT............................................................................................................................................................................... 27 0 1 13.00 13 5 1 2 1 0 0 0 0 4 0 0 0 0 0
..................................................ACGCTGTTAACGAGTACGAGATGGT............................................................................................................................................................................... 25 0 1 12.00 12 0 7 3 0 0 2 0 0 0 0 0 0 0 0
.................................................TACGCTGTTAACGAGTACGAGATGGT............................................................................................................................................................................... 26 0 1 7.00 7 5 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTGACAGCTCGGATACATGTCCT......................................................................................................... 23 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTACCAGATTAACAGCTAGA....................... 20 2 1 6.00 6 0 0 0 0 6 0 0 0 0 0 0 0 0 0
.........................................................................................................................CTTGACAGCTCGGATACATGTCCT......................................................................................................... 24 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TATGTTATAATATTAAAGTT........................................................ 20 1 2 4.00 8 0 0 0 0 8 0 0 0 0 0 0 0 0 0
................................................GTACGCTGTTAACGAGTACGAGA................................................................................................................................................................................... 23 0 1 3.00 3 0 0 0 0 0 0 0 3 0 0 0 0 0 0
.........................................................TAACGAGTACGAGATGGTAGCGAGAGAAT.................................................................................................................................................................... 29 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CCAAATGTACGCTGTTAACGAGT......................................................................................................................................................................................... 23 0 1 3.00 3 0 0 0 1 0 0 1 1 0 0 0 0 0 0
........................................................................................................................TCTTGACAGCTCGGATACATGTCCT......................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CCTGCACAAGCACATCCGCCATTATG........................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AGCGAGAGAATACGCAGCGAAATT....................................................................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
.....................................................................................................................................................ACCCCTGCACAAGCACATCCGCCATT........................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TACGAGATGGTAGCGAGAGAATA................................................................................................................................................................... 23 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
............................................................CGAGTACGAGATGGTAGCGAGAGAAT.................................................................................................................................................................... 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................ACGAGATGGTAGCGTGAGAAT.................................................................................................................................................................... 21 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................AGATGGTAGCGTGAGAATAC.................................................................................................................................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TACGAGATGGTAGCGTGAGAA..................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGCAGCTAGATTTTGTGTCCCTTATT....... 26 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................ACGCCGTTCACGAGTACGAGATGGT............................................................................................................................................................................... 25 2 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTACCAGATTAACAGCTAGATT..................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ACGCTGTTAACGAGTACGAGATGGTA.............................................................................................................................................................................. 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGACAGCTCGGATACATGTCCT......................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CCAAATGTACGCTGTTAACGA........................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
............AGAGCCCATTTACATGTCATTGTGTAT................................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0
................................................ATACGCTGTTAACGAGTACGAGATGGT............................................................................................................................................................................... 27 1 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................TTTGAGATGGTAGCGTGAGAA..................................................................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TACGAGATGGTAGCGAGAGAA..................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................CGAGATGGTAGCGAGAGAATA................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
...............................................................................................................................................................AAGCACATCCGCCATTATGTTATAAT................................................................. 26 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................CTCTTGACAGCTCGGATACATGTCCT......................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TACGCCGTTAACGAGTACGAGATGGT............................................................................................................................................................................... 26 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TACGCCGTTAACGAGTACGAG.................................................................................................................................................................................... 21 1 2 1.50 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0
.............................................AATGTACGCTGTTAA.............................................................................................................................................................................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................GGTAGCGAGAGAATACGCAGCGAAAT........................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTTATAATATTAAAGTATACATC.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGCAGCTAGATTTTGTGTCCCTTAT........ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................GTTAACGAGTACGAGATGGTAGCGA.......................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCAGATTAGCAGCTAGATTTTGTGTC.............. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................TGAGATGGTAGCGTGAGAA..................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTGACAGCTCGGATACATGTC........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GAGTACGAGATGGTAGCGAGAGAA..................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGCTAGATTTTGTGTCCTTTA......... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGTTTTTACCAGATTAGCAGCTAGAT...................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................CAGCTAGATTTTGTGTCCTTT.......... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............GCCCATTTACATGTCATTG........................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTTACCAGATTAGCAGCTAGATTT.................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAGCAGCTAGATTTTGTGTCCCTT.......... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAGCAGCTAGATTTTGTGTCCCTTAT........ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAGCAGCTAGATTTTGTGTCCCTTATTCAAT... 31 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................CCAAATGTACGCTGTTAACGAGTA........................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................AAGCACCCCTGCACAAGCACATCCGCCA............................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCTAGATTTTGTGTCCCTTATT....... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCAGATTAGCAGCTAGATTTTGT................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................TAGCGAGAGAATACGCAGCGAAAT........................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................CTGCACAAGCACATCCGCCATTATGTTAT.................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTTAACAGATTAGCAGCTAGATTT.................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CCCTTCACCAGCACATCCG................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................AAAGTACGAGATGGTAGCGAGAGAAT.................................................................................................................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............AGAGCCCATTTACATGTCAT.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTACCAGATTAGCAGCTAGATTTTGT................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................GAGTACGAGATGGTAGCGAGAGAATA................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................TGTACGCTGCTAACAAGTA........................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................CTTGACAGCTCGGATACATGT............................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGCACAAGCACATCCGCCATTATGTT...................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................ACGAGTACGAGATGGTAGCGTGAGAAT.................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGGATACATGTCCTAAGCACCCCTGCAC........................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AGCGAGAGAATACGCAGCGAAATTA...................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................TTACGAGATGGTAGCGTGAGAA..................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTACGAGATGGTAGCGTGAGAATACAC................................................................................................................................................................ 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GAGATGGTAGCGTGAGAACA................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CGAGTACGAGATGGTAGCGTGA........................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGCAGCTAGATTTTGTGTCCCT........... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGCTAGATTTTGTGTCCTTTATTCAAT... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGCTCTTGACAGCTCGGATACATGT............................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................CTGCACAAGCACATCCGCCATTATGT....................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTAGCAGCTAGATTTTGTGTCCCTT.......... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................CGAGAGAATACGCAGCGAAATTAATT................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCAGATTAACAGCTAGATTTT................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................AACGAGTACGAGATGGTAGCGTGAGAAT.................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................GTACGAGGTGGTAGCGTGAGA...................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGCTCTTGACAGCTCGGATTCATGT............................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................GTACGCTGTTAACGA........................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................GAGATGGTAGCGTGAGAATAC.................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTAGCAGCTAGATTTTGTGTCC............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAGCCCATTTACATGTCATTGTGT..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CTGTTAACGAGTACGAGATGGTAG............................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGCACAAGCACATCCGCCATTAT......................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................CCAAATGTACGCTGTTAA.............................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................CACAAGCACATCCGCCATTATGTTAT.................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......AAGCGTAGAGCCCATTTACATGTCAT.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ACAGCACATCCGCCATTATGTTATAATATT.............................................................. 30 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACCAGATTAGCAGCTAGATTTTGTGTCCCT........... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AGAGAATACGCAGCGAAATTAATTTT................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAGATTAGCAGCTAGATTTTGTGTCCC............ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AACGAGTACGAGATGGTAGCGAGAG....................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TAACGAGTACGAGATGGTAGCGAGA........................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................TTTGACAGCTCGGATACATGTCCT......................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GTCATTGTGTATATACCA............................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................CGAGTACGAGATGGTAGCGAGAGAATAC.................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGCTAGATTTTGTGTCCTTTATTCAAT... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................AACGAGTACGAGATGGTAGCGAGAGAAT.................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GAGAATACGCAGCGAAATTAATTTTAC............................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................GTCCGCTGTTAACGAGTACGAGATGGT............................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................ATGGTAGCGAGAGAATACGCAGCGAAAT........................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................AGCGAGAGAATACGCAGCGAAATTAATT................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................ATACGCGGTTAACGAATACGAGATGGT............................................................................................................................................................................... 27 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ACGCCGTTAACGAGTACGAGATGGT............................................................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CACGAGTACGAGATGGT............................................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
ACGGCTAAGCGTAGAGCTCAT..................................................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AACGCCGTTCACGAGTACGAGATGGT............................................................................................................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AACGCCGTTAACGAGTACGAGATGGT............................................................................................................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AGATGGTATCGAGAGA...................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................TTGAGATGGTAGCGTGAGAA..................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GAGAGATGGTAGCGTGAGAA..................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CTAGGATGCATGTCCT......................................................................................................... 16 2 19 0.11 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACGAGTACGAGATGGCTG............................................................................................................................................................................. 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................CAGTGTAGCAGCTAGCTTT.................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................AATGAGTACGAGATGGCTG............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................CAGCACGAGATGGTAG............................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11933837-11934086 - dsi_778 T--GCCGAT---TCGCATCTCGGGTAAATGTACAGTAACACATATAT-----------------GGTTTACA---TGCGA--------CAATTGCTC------ATGCTCTACC----------------ATCG--CTCTC------TTATGCGTCGCTTTAA-----------------TTAAAATGAAT------------AAT-------------------------------------------GGGATCGAGAACTG-----------------------------------------T------CGA-GCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TTATAATTTCATA--CGTA------GCAACA--AAAAT----GGTCTAATCGTCGATCTAAAACACA--GGGAATAAGTTAAGC
droSec2 scaffold_1:8753395-8753644 - T--GCCGAT---TCGCATCTCGGGTAAATGTACAGTAACACATATAT-----------------GGTTTGTA---TGCGA--------CAATTGCTC------ATGCTCTACC----------------ATCG--CTCTC------TTATGCGTCGCTTTAA-----------------TTAAAATGAAT------------AAT-------------------------------------------GGGATCGAGAACTG-----------------------------------------T------CGA-GCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TTATAATTTCATA--CGTA------GCAACA--AAAAT----GGTCTAATCGTCGATCTAAAACACA--GGGAATAAGTTAAGC
dm3 chr2R:11273746-11273974 - --------------------------AATGTACAGTAACACATATAT-----------------GGTTTGTA---TGCGG--------CACTCGCTC------ATGCTTTAAC----------------ATCG--CTCTC------TTATGCGTCGCTTTAA-----------------TTAAAATGAAC------------AAT-------------------------------------------GGGATCGAGAACTG-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TTATAATTTCATA--TGTA------GCAACA--AAGAT----GGTCTAACTGTCGATGTAAAACACA--GGAAACAAATTAAGC
droEre2 scaffold_4845:14602004-14602229 + T--GCCGAT---TCGCCTCTTAGGTAAATGTACATTAACAT----------------------------------------------------GCTC------ATGCTTTACT----------------ATCG--CTCTC------GTATGCGTCGCTTGAA-----------------TTAAAATGATT------------AAT-------------------------------------------GGGATCGAGCACTA-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------CGTAGGCGGTAATACAAT--A--TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGACTAATTGTCGATTTAAAACACA--GGAAATAAATTAAGC
droYak3 2R:17728046-17728287 + T--GCCGAT---TCGCCTCTTAGGTAAATGTACAGTAACAGATATATGCCTAT--A----TAT------------------------------GCTA------ATGCTTTACT----------------ATCG--CTCTC------TTATGCGTCGCTTGAA-----------------ATAAAATGAAT------------AAT-------------------------------------------GGGATCGAGCACTT-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGAAGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGC
droEug1 scf7180000409672:132625-132891 - T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATATGCCTAT--A----TATAGGTTTGTA---TGCGG--------CATTCCCTA------TCGCTTTACT----------------CTCTCACTTTC------TTTTGCGTCTCTTCAA-----------------TTAAACTGAAT------------AAT-------------------------------------------AAGATCGAACACTA-----------------------------------------TCGAT--CGA-CCC--TATGTACAGGATTCGTGGGGACGAGTTCG----------------------------------TGTAGACGGTAATACATT--T--TTATAATTTCATA--AGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGC
droBia1 scf7180000302143:134706-134962 + T---CCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATATGCCTATGGA----TTTAGGTTTGCA---CGCGG--------CATGCGTTG------TCGCTATACT----------------CTCG--CTTTC------CTATGCGTCGCTTCAA-----------------CTAAACTGAAT------------AAT-------------------------------------------GGGGTCGAGCACTG-----------------------------------------T------CGA-TCCTATATGTACATGGTTCGTGTAG--GTG--------------------------------------TATAGGCGGTAATACAAT-----TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGC
droTak1 scf7180000410831:26264-26500 + T--GCCGAT---TCGCCTCTGGGCTAAATGTACAGTAACAGATATATG----------------------------------------------CTA------TCGCTTTACT----------------TTCG--CTCTC------TTATGCGTCGCTTCAAAACC------------TTTAAACTGAAT------------AAT-------------------------------------------GGGATCGAGCACTA-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGAAGTGTTCG----------------------------------TGTAGGCGGTAATACAAT-----TTATAATTTCATA--TGTA------GCAACAA-AAAAT----AGTCTAATTGTCGATGTAAAAGACA--GGAAATAAATTAAGC
droEle1 scf7180000491214:4132770-4133045 - T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATGGGCCTAT--ATT---ATGGGTTTGTA---TGCGG--------CATTCGCTC------TCGCTAAACT----------------CTCG--CTCTCGCCTTCGGATGCGTCGCTTCGA-----------------TTAAACTGATCAATGGATC----AAT-------------------------------------------GGGATCGAGCACTA-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCGT---------------------------------AATAGGCGGTAATACATT-----TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGC
droRho1 scf7180000776849:552052-552312 + T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATTGGCCTAT--ATT---ATAGGTTTGTA---TGCGG--------CACTCGCTT------TCACTTTACT----------------CTCG--CTTTC------TTATGCGTCGCTTCGA-----------------CTAAACTGAAT------------AAT-------------------------------------------GGGATCGAGCACAA-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------TGTAGGCGGTAATACATT-----GTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGC
droFic1 scf7180000453342:660733-660997 + T--GCCGAT---TTGCCTCTGGGCTAAATGTACAGTAACAGATATAGGCCTAT--A----TATAGGTTTGCT---TGCGG--------CATTCGGTCTCGCTCTAGCTTTACT----------------CTCG--CTTTC------TGATGCATCGCTTCGG-----------------TAAAACTGAAT------------AGG-------------------------------------------GGGATCGAGCACT------------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------CGTAGGCGGTAATACATT-----TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAAATGTCGATGTAAAACACA--GGAAATAAATTAAGC
droKik1 scf7180000302476:297228-297477 - TATGCCGATGATTCGCCTCTTGGCTAAATGTACAATAACAGATATACGTCTAT--A----TATTG--------------------------------------GGGCTTTACT----------------CTCGC-CTTTT------CTGTGCCTCGCTTCGATTTCGATTTCTTTTTTTTTCAACTGAAT------------G---------------------------------------------GGGATCGAGCACAG-----------------------------------------T------CGA-CCC--TATATACAGGATTCGTGGGGACGTGGTCG----------------------------------------------TACATG-----GTATAATTTCATA-TTGTA------GCAAAG--AAAATA---CGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGT
droAna3 scaffold_13266:7690180-7690474 - T--GCCGATT-TTCGCCTCTTGGCTAAATGTACAGTAACAGATATAACCCTAT--GTATAAATAGGCTTCTAATTCGCTCCTTCAAATCGCTCGCTTTCGATTTT--G-TATTGTTATTACTTAAGTTTTTCG--CTCTATAACTTGTATGCTTCGTTTTA----------------------GCTGA---------------AT-------------------------------------------GGGGTCGAGCACTA-----------------------------------------G------TGA-CCC--TATTTACAGGATTCGGGGGGAAGTGTTCG----------------------------------GTTAGGCGGTAATACGTT-----TTATAATTTCATA--TGTAG-----GCAACG--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGT
droBip1 scf7180000396759:1133635-1133916 + T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATAACCCTAT--ATGCAAATAGGCTTGTA---TTCC--TTCAAATCGCTCGCTTTCGATTTAGCT--T------TTACTTAAGT-GTTCG--CTCTATAACTTGTATGCTTCGTTTT---------------------TAGCTGA---------------AT-------------------------------------------GGGGTCGAGCACTA-----------------------------------------G------TGA-CCC--TATTTACAGGATTCGGGGGGAAGTGTTCG----------------------------------GTTAGGCGGTAATACGTT-----TTATAATTTCATA--TGTA------GCAACG--AAAAT----AGTCTAATTGTCGATGTAAAACACA--AGAAATAAATTAAGT
dp5 3:11915515-11915831 - T--GCCGAT---TCGCCTCTTGGCTAAATGTACACTAACAAATAGACATTTAT--CTATATATTGTATAGTTGTTTGGGG--------CCTTT----GCGATTAA--ATGATTCATGTTGTGGGGGGGTTTCT--GTCAACAAGTTGGATGGTGCGTGGT--------------------------GTAT------------TATGGGGTCACGG-------------TACGGG--T------------------------AAGGGCACGGACATG---------AGCACCG-ACCAGGCAAAGTGCCGGCTG-TCC--TATGTACAGGATTAGTGG----GTGTAGG----------------------------------TCTAGGTAGTAATACAGT-----GTTTAATTTCTTA--TGTA------CCAACG--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATAAAGA
droPer2 scaffold_44:127622-127938 - T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAAATAGACATTGAT--CTATATATTGTATAGTAGTTTGGGC--------CCTCT----GCGATTAA--ATGATTCATGTTGTGGGGGGGTTTCT--GTCAACAAGTTGGATGGTGCATGGT--------------------------GTAT------------TATGGAGTCACGG-------------TACGGG--T------------------------AAGGGCACGGACATG---------AACACCG-ACCAGGCAAAGTGCCGGCTG-TCC--TATGTACAGGATTAGTGG----GTGTAGG----------------------------------TCTAGGTAGTAATACAGT-----GTTTAATTTCTTA--TGTA------CCAACG--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATAAAGA
droWil2 scf2_1100000004954:3141799-3142156 + T--GCGGAT--CTCGCCTCTTGGCTAAATATACAATAACAAATCTAGGC----------------------------------------AGC--CGA------TTCTTTTATT----------------TTTA--CTTTG------TT-TCCGTAAATTTAA-----------------TTGAAATGTTT-------CAGATGTTGGGGTCATGGGTGGAGAAGACAGCATGGGGGGAGCAGAGCGGAGGGATTTACAACTA---------AAACGAAAGCCCATACCACAGAAGCAGACATTTCGCT--TGCCCTC--TATGTACAGGATTAGTTA-------TTTATAAACACTATATGGGTCATTTAGTTATATGTATATTTAGGTGGTAATACGATTCATCATATAATTTCATA--TGTAGTAGTAGCAACGG-AAAAT----TGTCTAA---TCGGTGTAAAACACAGTGGAAATAAATTAAGT
droVir3 scaffold_12875:20256871-20256950 - A--------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATGC--------TTATAATTTCATAATTGTA------TCAAAGGAAAAAT----TGTCTAA---TCGGTGTAAAACACAA-GGAAATAAATTAGGT
droGri2 scaffold_15245:11286360-11286442 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTGTAATGC--------TTATAATTTCATA-TCGTA------TCAGAG--GGAATAAATTGTCTAA---TCGGTGTAAAACACAA-GCAAATAAATTAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
T--GCCGAT---TCGCATCTCGGGTAAATGTACAGTAACACATATAT-----------------GGTTTACA---TGCGA--------CAATTGCTC------ATGCTCTACC----------------ATCG--CTCTC------TTATGCGTCGCTTTAA-----------------TTAAAATGAAT------------AAT-------------------------------------------GGGATCGAGAACTG-----------------------------------------T------CGA-GCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TTATAATTTCATA--CGTA------GCAACA--AAAAT----GGTCTAATCGTCGATCTAAAACACA--GGGAATAAGTTAAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................GGGACGTGTTCG----------------------------------TGTAGGCGG..................................................................................................21116.0016000000000000016000
..................................................................................................................................................................................................................................................................................................................................................GACGTGTTCG----------------------------------TGTAGGCGGTA................................................................................................2119.00900000000000009000
..................................................................................................................................................................................................................................................................................................................................................GACGTGTTCG----------------------------------TGTAGGCGGTTT...............................................................................................2217.00700000000000007000
.....................................................................................................................................................................................................................................................................................................................................CAGGATTCGTGGGGACGTGTT...............................................................................................................................................2117.00700000000000007000
...............................................................................................................................................................................................................................................................................................................................TATGTACAGGATTCGTGGGGA.....................................................................................................................................................2115.00500000000000005000
....................................................................................................................................................................................................................................................................................................................................................CGTGTTCG----------------------------------TGTAGGCGGTAAT..............................................................................................2115.00500000000000005000
..................................................................................................................................................................................................................................................................................................................................................GACGTGTTCG----------------------------------TGTAGGCGGTAA...............................................................................................2213.00300000000000003000
.................................................................................................................................................................................................................................................................................................................................TGTACAGGATTCGTGGGGACGC..................................................................................................................................................2213.00300000000000003000
.........................................................................................................................................CTC------TTATGCGTCGCTTTAA-----------------TT....................................................................................................................................................................................................................................................................................................................2113.00300000000000003000
..................................................................................................................................................................................................................................................................................................................................GTACAGGATTCGTGGGGACGT..................................................................................................................................................2113.00300000000000003000
.................................................................................................................................................................................................................................................................................................................................TGTACAGGATTCGTGGGGAC....................................................................................................................................................2013.00300000000000003000
..............................................................................................................................................................................................................................................................................................................................................TGGGGACGTGTTCG----------------------------------TGTAGGCGGTAA...............................................................................................2612.00200000000000002000
............................................................................................................................................................................................................................................................................................................................C--TATGTACAGGATTCGTGGGG......................................................................................................................................................2112.00200000000000002000
......................................................................................................................................................................................................................................................................................................................CGA-GCC--TATGTACAGGATTCGTGGGGA.....................................................................................................................................................2712.00200000000200000000
..............................................................................................................................................................................................................................................................................................................................................TGGGGACGTGTTCG----------------------------------TGTAGGCGGTAAT..............................................................................................2712.00200000000000002000
..................................................................................................................................................................................................................................................................................................................................GTACAGGATTCGTGGGGAC....................................................................................................................................................1912.00200000000000002000
..........................................................................................................................................TC------TTATGCGTCGCTTTAA-----------------TTA...................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
................................................................................................................................................................................................................................................................................................................................................GGGACGTGTTCG----------------------------------TGTAGGCGGT.................................................................................................2212.00200000000000002000
.................................................................................................................................................................................................................................................................................................................................................GGACGTGTTCG----------------------------------TGTAGGCGGTT................................................................................................2212.00200000000000002000
...................................................................................................................................................................................................................................................................................................................................................ACGTGTTCG----------------------------------TGTAGGCGGTAAT..............................................................................................2212.00200000000000002000
....................................................................................................................................................................................................................................................................................................................................................CGTGTTCG----------------------------------TGTAGGCGGTAT...............................................................................................2012.00200000000000002000
.....................................................................................................................................................................................................................................................................................................................................CAGGATTCGTGGGGACGTG.................................................................................................................................................1912.00200000000000002000
....................................................................................................................................................................................................................................................................................................................................ACAGGATTCGTGGGGACGTG.................................................................................................................................................2012.00200000000000002000
................................................................................................................................................................................................................................................................................................................................ATGTACAGGATTCGTGGGGA.....................................................................................................................................................2012.00200000000000002000
..................................................................................................................................................................................................................................................................................................................................................GACGTGTTCG----------------------------------TGTAGGCGGTAT...............................................................................................2212.00200000000000002000
...................................................................................................................................................................................................................................................................................................................................................ACGTGTTCG----------------------------------TGTAGGCGGTAT...............................................................................................2112.00200000000000002000
....................................................................................................................................................................................................................................................................................................................................ACAGGATTCGTGGGGACGTGT................................................................................................................................................2112.00200000000000002000
..................................................................................................................................................................................................................................................................................................................................................GACGTGTTCG----------------------------------TGTAGGCGGTT................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................GTGTTCG----------------------------------TGTAGGCGGTAATA.............................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................ACGTGTTCG----------------------------------TGTAGGCGGTTT...............................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................TGTTCG----------------------------------TGTAGGCGGTAATT.............................................................................................2011.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................GGACGTGTTCG----------------------------------TGTAGGCGTA.................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................GTTCG----------------------------------TGTAGGCGGTAAT..............................................................................................1811.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................TGTTCG----------------------------------TGTAGGCGGTAATA.............................................................................................2011.00100000000000001000
...............................................................................................................................................................................................................................................................AGAACTG-----------------------------------------T------CGA-GCC--TATGTACA..................................................................................................................................................................2211.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................GGACGTGTTCG----------------------------------TGTAGGCGG..................................................................................................2011.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................TGGGGACGTGTTCG----------------------------------TGTAG......................................................................................................1911.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................ACGTGTTCG----------------------------------TGTAGGCGGTT................................................................................................2011.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................TGGGGACGTGTTCG----------------------------------TGTAGGCG...................................................................................................2211.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................TACAGGATTCGTGGGGACGTT.................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................CAGGATTCGTGGGGACGTGTTTA----------------------------------...........................................................................................................2311.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................TATGTACAGGATTCGTGGGTT.....................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................ACGTGTTCG----------------------------------TGTAGGCGGTAA...............................................................................................2111.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................TGTAGGCGGTAATACAAT--A--TT..................................................................................2111.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................GGACGTGTTCG----------------------------------TGTAGGCGGTTT...............................................................................................2311.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................GGGGACGTGTTCG----------------------------------TGTAGGCGTA.................................................................................................2311.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................CGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--....................................................................................2711.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................GGGACGTGTTCG----------------------------------TGTAGGCGGTT................................................................................................2311.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................TGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TT..................................................................................2711.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................TGTACAGGATTCGTGGGGACGTGTT...............................................................................................................................................2511.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................CGTGGGGACGTGTTCG----------------------------------TGTAGGCGG..................................................................................................2511.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................TATGTACAGGATTCGTGGGG......................................................................................................................................................2011.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................CAGGATTCGTGGGGACGTGTTT..............................................................................................................................................2211.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................TACAGGATTCGTGGGGACGT..................................................................................................................................................2011.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................GGGGACGTGTTCG----------------------------------TGTAGGCG...................................................................................................2111.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................GTACAGGATTCGTGGGGA.....................................................................................................................................................1811.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................ACAGGATTCGTGGGGACGTGTT...............................................................................................................................................2211.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................GTTCG----------------------------------TGTAGGCGGTAATACAAT--A--A...................................................................................2511.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................AGGATTCGTGGGGACGTGTTA..............................................................................................................................................2111.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................TGTACAGGATTCGTGGGGA.....................................................................................................................................................1911.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................TAGGCGGTAATACAAT--A--TTATAATT............................................................................2511.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................ACGTGTTCG----------------------------------TGTAGGCGGTA................................................................................................2011.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................CC--TATGTACAGGATTCGTGGA.......................................................................................................................................................2111.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................CGTGTTCG----------------------------------TGTAGGCGGTAA...............................................................................................2011.00100000000000001000
............................................................................................................................................................................................................................................................................................................................C--TATGTACAGGATTCGTGGGGT.....................................................................................................................................................2211.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................AGGATTCGTGGGGACGTGTTC..............................................................................................................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................TCGTGGGGACGTGTTCG----------------------------------TGTAGGCGG..................................................................................................2611.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................TATGTACAGGATTCGTGGGGACGTG.................................................................................................................................................2511.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................TACAGGATTCGTGGGGACGTAAA...............................................................................................................................................2311.00100000000000001000
................................................................................................................................................................................................................................................................................................................................ATGTACAGGATTCGTGGGGATT...................................................................................................................................................2211.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................GGACGTGTTCG----------------------------------TGTAGGCGGT.................................................................................................2111.00100000000000001000
........T---TCGCATCTCGGGTAAATGTACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAAACACA--GGGC...........1530.33100000000010000000
..................................................................................................................................................................................................................................................................................................................................GTACAGGATTCGTGGGGTTT...................................................................................................................................................2050.20100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAAAACACA--GGA............1580.13100000001000000000
droSec2
T--GCCGAT---TCGCATCTCGGGTAAATGTACAGTAACACATATAT-----------------GGTTTGTA---TGCGA--------CAATTGCTC------ATGCTCTACC----------------ATCG--CTCTC------TTATGCGTCGCTTTAA-----------------TTAAAATGAAT------------AAT-------------------------------------------GGGATCGAGAACTG-----------------------------------------T------CGA-GCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TTATAATTTCATA--CGTA------GCAACA--AAAAT----GGTCTAATCGTCGATCTAAAACACA--GGGAATAAGTTAAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................ATTCGTGGGGACGTGTTCG----------------------------------TG.........................................................................................................2190.1110100
...............................................................................................................................................................................................................................................................AGAACTG-----------------------------------------T------CGA-GCC--TATGTA....................................................................................................................................................................2090.1110100
........................................................................................................................................................................................................................................................................................................................................GATTCGTGGGGACGTGTTCG----------------------------------T..........................................................................................................2190.1110001
dm3
--------------------------AATGTACAGTAACACATATAT-----------------GGTTTGTA---TGCGG--------CACTCGCTC------ATGCTTTAAC----------------ATCG--CTCTC------TTATGCGTCGCTTTAA-----------------TTAAAATGAAC------------AAT-------------------------------------------GGGATCGAGAACTG-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TTATAATTTCATA--TGTA------GCAACA--AAGAT----GGTCTAACTGTCGATGTAAAACACA--GGAAACAAATTAAGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................ATGTACAGGATTCGTGGGGAC....................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000021000
...............................................................................................................................................................................................................................................................................................................................TATGTACAGGATTCGTGGGGA.....................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
...........................................................................................................................................................................................................AT-------------------------------------------GGGATCGAGAACTG-----------------------------------------T------CGA-CC.............................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TA--TGTA------GCAACA--AAGAT----GGTC......................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000
.............................................AT-----------------GGTTTGTA---TGCGG--------CACTCG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................AAT-------------------------------------------GGGATCGAGAACTG-----------------------------------------T------...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TA--TGTA------GCAACA--AAGAT----GGT.......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAT----GGTCTAACTGTCGATGT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
............................................................................................................................................................................................................................................................................................................................................CGTGGGGACGTGTTCG----------------------------------TGTAG......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................GAAC------------AAT-------------------------------------------GGGATCGAGAACT....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ATTCGTGGGGACGTGTTCG----------------------------------TG.........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..............................................................................................CTC------ATGCTTTAAC----------------ATCG--CTCT..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................AAATGAAC------------AAT-------------------------------------------GGGATCGAGA.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................ATAT-----------------GGTTTGTA---TGCGG--------CACT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................................................................................................................................CCC--TATGTACAGGATTCGTGG........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAACTGTCGATGTAAAA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
............................................TAT-----------------GGTTTGTA---TGCGG--------CACTC............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GACGTGTTCG----------------------------------TGTAGGCG...................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TATGTACAGGATTCGTGGGGACGTG.................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................GGTTTGTA---TGCGG--------CACTCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................G--CTCTC------TTATGCGTCGCT...........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
............................................TAT-----------------GGTTTGTA---TGCGT--------G................................................................................................................................................................................................................................................................................................................................................................................................................17200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
T--GCCGAT---TCGCCTCTTAGGTAAATGTACATTAACAT----------------------------------------------------GCTC------ATGCTTTACT----------------ATCG--CTCTC------GTATGCGTCGCTTGAA-----------------TTAAAATGATT------------AAT-------------------------------------------GGGATCGAGCACTA-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------CGTAGGCGGTAATACAAT--A--TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGACTAATTGTCGATTTAAAACACA--GGAAATAAATTAAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................ATGTACAGGATTCGTGGGGAC....................................................................................................................................................2111.0010000100
................................................................................................................................................................................................................................................................................................................................ATGTACAGGATTCGTGGGGA.....................................................................................................................................................2011.0010000100
...............................................................................................................................................................................................................................................................................................................................TATGTACAGGATTCGTGGGGA.....................................................................................................................................................2111.0010000100
............................................................................................................................................................................................TT------------AAT-------------------------------------------GGGATCGAGCACTA-----------------------------------------T------...................................................................................................................................................................................2011.0010000100
droYak3
T--GCCGAT---TCGCCTCTTAGGTAAATGTACAGTAACAGATATATGCCTAT--A----TAT------------------------------GCTA------ATGCTTTACT----------------ATCG--CTCTC------TTATGCGTCGCTTGAA-----------------ATAAAATGAAT------------AAT-------------------------------------------GGGATCGAGCACTT-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGAAGTGTTCG----------------------------------TGTAGGCGGTAATACAAT--A--TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................AAATGAAT------------AAT-------------------------------------------GGGATCGAGC.......................................................................................................................................................................................................................................2111.00100000010000
droEug1
T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATATGCCTAT--A----TATAGGTTTGTA---TGCGG--------CATTCCCTA------TCGCTTTACT----------------CTCTCACTTTC------TTTTGCGTCTCTTCAA-----------------TTAAACTGAAT------------AAT-------------------------------------------AAGATCGAACACTA-----------------------------------------TCGAT--CGA-CCC--TATGTACAGGATTCGTGGGGACGAGTTCG----------------------------------TGTAGACGGTAATACATT--T--TTATAATTTCATA--AGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGCSizeHit CountTotal NormTotal
No Reads
droBia1
T---CCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATATGCCTATGGA----TTTAGGTTTGCA---CGCGG--------CATGCGTTG------TCGCTATACT----------------CTCG--CTTTC------CTATGCGTCGCTTCAA-----------------CTAAACTGAAT------------AAT-------------------------------------------GGGGTCGAGCACTG-----------------------------------------T------CGA-TCCTATATGTACATGGTTCGTGTAG--GTG--------------------------------------TATAGGCGGTAATACAAT-----TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGCSizeHit CountTotal NormTotal
No Reads
droTak1
T--GCCGAT---TCGCCTCTGGGCTAAATGTACAGTAACAGATATATG----------------------------------------------CTA------TCGCTTTACT----------------TTCG--CTCTC------TTATGCGTCGCTTCAAAACC------------TTTAAACTGAAT------------AAT-------------------------------------------GGGATCGAGCACTA-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGAAGTGTTCG----------------------------------TGTAGGCGGTAATACAAT-----TTATAATTTCATA--TGTA------GCAACAA-AAAAT----AGTCTAATTGTCGATGTAAAAGACA--GGAAATAAATTAAGCSizeHit CountTotal NormTotal
No Reads
droEle1
T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATGGGCCTAT--ATT---ATGGGTTTGTA---TGCGG--------CATTCGCTC------TCGCTAAACT----------------CTCG--CTCTCGCCTTCGGATGCGTCGCTTCGA-----------------TTAAACTGATCAATGGATC----AAT-------------------------------------------GGGATCGAGCACTA-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCGT---------------------------------AATAGGCGGTAATACATT-----TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGCSizeHit CountTotal NormTotal
No Reads
droRho1
T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATTGGCCTAT--ATT---ATAGGTTTGTA---TGCGG--------CACTCGCTT------TCACTTTACT----------------CTCG--CTTTC------TTATGCGTCGCTTCGA-----------------CTAAACTGAAT------------AAT-------------------------------------------GGGATCGAGCACAA-----------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------TGTAGGCGGTAATACATT-----GTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGCSizeHit CountTotal NormTotal
No Reads
droFic1
T--GCCGAT---TTGCCTCTGGGCTAAATGTACAGTAACAGATATAGGCCTAT--A----TATAGGTTTGCT---TGCGG--------CATTCGGTCTCGCTCTAGCTTTACT----------------CTCG--CTTTC------TGATGCATCGCTTCGG-----------------TAAAACTGAAT------------AGG-------------------------------------------GGGATCGAGCACT------------------------------------------T------CGA-CCC--TATGTACAGGATTCGTGGGGACGTGTTCG----------------------------------CGTAGGCGGTAATACATT-----TTATAATTTCATA--TGTA------GCAACA--AAAAT----AGTCTAAATGTCGATGTAAAACACA--GGAAATAAATTAAGCSizeHit CountTotal NormTotal
No Reads
droKik1
TATGCCGATGATTCGCCTCTTGGCTAAATGTACAATAACAGATATACGTCTAT--A----TATTG--------------------------------------GGGCTTTACT----------------CTCGC-CTTTT------CTGTGCCTCGCTTCGATTTCGATTTCTTTTTTTTTCAACTGAAT------------G---------------------------------------------GGGATCGAGCACAG-----------------------------------------T------CGA-CCC--TATATACAGGATTCGTGGGGACGTGGTCG----------------------------------------------TACATG-----GTATAATTTCATA-TTGTA------GCAAAG--AAAATA---CGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGTSizeHit CountTotal NormTotal
No Reads
droAna3
T--GCCGATT-TTCGCCTCTTGGCTAAATGTACAGTAACAGATATAACCCTAT--GTATAAATAGGCTTCTAATTCGCTCCTTCAAATCGCTCGCTTTCGATTTT--G-TATTGTTATTACTTAAGTTTTTCG--CTCTATAACTTGTATGCTTCGTTTTA----------------------GCTGA---------------AT-------------------------------------------GGGGTCGAGCACTA-----------------------------------------G------TGA-CCC--TATTTACAGGATTCGGGGGGAAGTGTTCG----------------------------------GTTAGGCGGTAATACGTT-----TTATAATTTCATA--TGTAG-----GCAACG--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATTAAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAGATATAACCCTAT--ATGCAAATAGGCTTGTA---TTCC--TTCAAATCGCTCGCTTTCGATTTAGCT--T------TTACTTAAGT-GTTCG--CTCTATAACTTGTATGCTTCGTTTT---------------------TAGCTGA---------------AT-------------------------------------------GGGGTCGAGCACTA-----------------------------------------G------TGA-CCC--TATTTACAGGATTCGGGGGGAAGTGTTCG----------------------------------GTTAGGCGGTAATACGTT-----TTATAATTTCATA--TGTA------GCAACG--AAAAT----AGTCTAATTGTCGATGTAAAACACA--AGAAATAAATTAAGTSizeHit CountTotal NormTotal
No Reads
dp5
T--GCCGAT---TCGCCTCTTGGCTAAATGTACACTAACAAATAGACATTTAT--CTATATATTGTATAGTTGTTTGGGG--------CCTTT----GCGATTAA--ATGATTCATGTTGTGGGGGGGTTTCT--GTCAACAAGTTGGATGGTGCGTGGT--------------------------GTAT------------TATGGGGTCACGG-------------TACGGG--T------------------------AAGGGCACGGACATG---------AGCACCG-ACCAGGCAAAGTGCCGGCTG-TCC--TATGTACAGGATTAGTGG----GTGTAGG----------------------------------TCTAGGTAGTAATACAGT-----GTTTAATTTCTTA--TGTA------CCAACG--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATAAAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGATGTAAAACACA--GGA............2111.0010000000010
...............................................................................................................................................................................................................................................................................................................................................GG----GTGTAGG----------------------------------TCTAGGTAGTAA...............................................................................................2111.0010000001000
................................................................................................................................................................................................................................................................................................................................ATGTACAGGATTAGTGG----GTT.................................................................................................................................................2011.0010000001000
droPer2
T--GCCGAT---TCGCCTCTTGGCTAAATGTACAGTAACAAATAGACATTGAT--CTATATATTGTATAGTAGTTTGGGC--------CCTCT----GCGATTAA--ATGATTCATGTTGTGGGGGGGTTTCT--GTCAACAAGTTGGATGGTGCATGGT--------------------------GTAT------------TATGGAGTCACGG-------------TACGGG--T------------------------AAGGGCACGGACATG---------AACACCG-ACCAGGCAAAGTGCCGGCTG-TCC--TATGTACAGGATTAGTGG----GTGTAGG----------------------------------TCTAGGTAGTAATACAGT-----GTTTAATTTCTTA--TGTA------CCAACG--AAAAT----AGTCTAATTGTCGATGTAAAACACA--GGAAATAAATAAAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................GTGG----GTGTAGG----------------------------------TCTAGGTAG..................................................................................................2012.002000002
...............................................................................................................................................................................................................................................................................................................................TATGTACAGGATTAGTGG----G...................................................................................................................................................1911.001000001
..............................................................................................................................................AGTTGGATGGTGCATGGT--------------------------...............................................................................................................................................................................................................................................................................................................1811.001000001
droWil2
T--GCGGAT--CTCGCCTCTTGGCTAAATATACAATAACAAATCTAGGC----------------------------------------AGC--CGA------TTCTTTTATT----------------TTTA--CTTTG------TT-TCCGTAAATTTAA-----------------TTGAAATGTTT-------CAGATGTTGGGGTCATGGGTGGAGAAGACAGCATGGGGGGAGCAGAGCGGAGGGATTTACAACTA---------AAACGAAAGCCCATACCACAGAAGCAGACATTTCGCT--TGCCCTC--TATGTACAGGATTAGTTA-------TTTATAAACACTATATGGGTCATTTAGTTATATGTATATTTAGGTGGTAATACGATTCATCATATAATTTCATA--TGTAGTAGTAGCAACGG-AAAAT----TGTCTAA---TCGGTGTAAAACACAGTGGAAATAAATTAAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
A--------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATGC--------TTATAATTTCATAATTGTA------TCAAAGGAAAAAT----TGTCTAA---TCGGTGTAAAACACAA-GGAAATAAATTAGGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAT----TGTCTAA---TCGGTGT.........................2112.002000000000100000000000000000010000000000000000000000000000000000
droGri2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTGTAATGC--------TTATAATTTCATA-TCGTA------TCAGAG--GGAATAAATTGTCTAA---TCGGTGTAAAACACAA-GCAAATAAATTAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:54 AM