ID:

dsi_7774

 Coordinate:

3l:8355517-8355735 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.3 -28.2 -28.2

Flybase annnotation

exon [3l_8355736_8356367_+]; CDS [3l_8355736_8356367_+]; exon [3l_8354857_8355516_+]; CDS [3l_8354857_8355516_+]; intron [3l_8355517_8355735_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCACCACAGACGAAAGTGACACCGAGTACGCCTATAGAAGCCAGAACAATGTATGAAACACGTTTATTACTTTTCCACATTGTTATATTTTGTATTAGTCTTTGAAAGCACCAGCAAATGAAATTGGCATTGAGATGAATGGCAAAATTGAAGCACCAATTTGTTTCAAGTAGTCTAGCTATAATATCTGGTCTGGGTAGCAAATCTAACACGTAACCGATCTAACCGGCAGTATTTCTTTTCTCTCTTCTAACCTCTAACCATAACAGACTTTGGGTCGCAGCGGTTACTACGGTTCCAGCGAAATGCGCAGTTCGCC
**************************************************.............................(((((((....(((.((((..((((..((.(((((.........(((.((((......)))).)))..((((((((......))))))))(((((...))))).....)))))))......)))).)))).)))...(((.......))).................................)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 O001
Testis
 O002
Head
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.........................GTACGCCTATAGAAGCCAGAACAATGT........................................................................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................TATAGAAGCCAGAACAAT............................................................................................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................GTACGCCTATAGAAGCCAGAACAATGC........................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................GTACGCCTATAGAAGCCAGAACAATGG........................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................ACACCGAGTACGCCTATAGAA........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................ATAGAAGCCAGAACAATGTATGAAAC.................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................ATACTTTGGGTCGCAGCGGTT............................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGACCGATCTAACCGGCAGT...................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................TTGAGATGAATGGCAAAATTG......................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGCAGTAACTCTTTTCTCTCTT...................................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0
...................................................TATGAAACGCGCTTATTACTTTG..................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................AAGTAGTCTAGGTAAAATA..................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TCTCTTTTCTCTCTCCTA................................................................... 18 2 11 0.18 2 0 0 0 0 0 2 0 0 0
.......................................................................TTTCCACATTCTGATCTTTTGT.................................................................................................................................................................................................................................. 22 3 7 0.14 1 0 0 0 0 0 1 0 0 0
................CGAGACCGAGTACGCCT.............................................................................................................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................ATCTAACTGGCAGTAT.................................................................................... 16 1 12 0.08 1 0 0 0 0 0 1 0 0 0
........................................................................................TTTGTATTGGACTTTGAACG................................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................ACCGTTATAACCGGC......................................................................................... 15 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

AGTGGTGTCTGCTTTCACTGTGGCTCATGCGGATATCTTCGGTCTTGTTACATACTTTGTGCAAATAATGAAAAGGTGTAACAATATAAAACATAATCAGAAACTTTCGTGGTCGTTTACTTTAACCGTAACTCTACTTACCGTTTTAACTTCGTGGTTAAACAAAGTTCATCAGATCGATATTATAGACCAGACCCATCGTTTAGATTGTGCATTGGCTAGATTGGCCGTCATAAAGAAAAGAGAGAAGATTGGAGATTGGTATTGTCTGAAACCCAGCGTCGCCAATGATGCCAAGGTCGCTTTACGCGTCAAGCGG
**************************************************.............................(((((((....(((.((((..((((..((.(((((.........(((.((((......)))).)))..((((((((......))))))))(((((...))))).....)))))))......)))).)))).)))...(((.......))).................................)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
.....TGTCTGCTTTCACTGTGGCTCA.................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................GGACCAGACCCATCGTTTAGA................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
...................GTGGCTCATGCGGATATCTTC....................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................AAAGAAGCTTGGAGATTG.......................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................AGAAGCTTGGAGATTG.......................................................... 16 1 4 0.50 2 0 0 1 1 0 0 0
...................................................................................................................................................................................................................................................AAAGAAGCTTGGAGATT........................................................... 17 2 10 0.40 4 0 0 0 2 2 0 0
....CTGCCTGCTTTCATTGTGGCT...................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TAGAAGCTTGGAGATTG.......................................................... 17 2 6 0.17 1 0 0 0 1 0 0 0
..................TGTGGCTCAAGAGGATA............................................................................................................................................................................................................................................................................................ 17 2 12 0.17 2 0 0 0 0 0 2 0
..............................GGATCTACTCGGTCTTGTT.............................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0
.....................................................................................................................................................................AGTTCAACAGATCGAAATA....................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:8355467-8355785 + dsi_7774 TCACCACAGACGAAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGTT------TA--------TTA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAAAGCACC---AGCAAATG---AAATTGGCATTGAGATG--AATGGCAAAATTGAAG-CACCAATT-----TGT--TTCA-AGTAGTCTAG--------------CTATAATA-------------------------TCTGGT----CTGGG-T-----------------AGCAAATCTAACACGTAACCGATCTAACCGGCAGTATTTCTT-TTC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAAATGCGCAGTTCGCC
droSec2 scaffold_0:844980-845298 + TCACCACTGACGAAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGTT------TA--------TCA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAGAGCACG---AGCAAATG---AAATTGGCATTGAGATG--AATGGCAAAATTGAAG-CACCAATT-----TGT--TTCA-AGTAGTCTAG--------------CTATAATA-------------------------TCTGGT----GTGGG-T-----------------AGCAAATCTAACACGTAACCGATCTAACCGGCAATATTTCTT-TTC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACATTGGGTCGCAGCGG------------TTACTACGGATCC------AGCGAAATGCACAGTTCGCC
dm3 chr3L:8565728-8566047 + TCACCACAGACGAAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CATGTT------TA--------TCA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAAAGCACC---AGCAAAAG---AAATTGGCATTGAGATG--AATTGCTAAATTGAAG-CACCAATT-----TGT--TTAA-AGTAGTCTAG--------------TTCTAATA-------------------------TCTGGT----GTGGGGT-----------------AGCAAATCTAACACGTAACCGATCTAACCAGCAGTATTTCTT-TTC----------TCTCCTCTAA-----CCTC-TAATCATAACAGACTTTGGGTCGCAGCGG------------TTACTATGGTTCC------AGCGAAATGCCCAGTTCGCC
droEre2 scaffold_4784:5481436-5481749 - TCACCACAGACGAAAGTGACACCGAGTACGCCAAT------------AGAAGCCAGAACAATGTATGAAA-CACGTT------TA--------CCT-TTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAAAGCACG---AACAAAAG--AAAATTGGCATTGAGA------TGGCTAAATTGAAG-CACCATTT-----TGA--TTCA-AGTAGTCTAG--------------TTCTAATTT---------------------------GGT----GTGGG-T-----------------AGCCAATCTAACAAGTAACCAATCTAACCGGCAGTATTTCTT-TTC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGATGCCCAGTTCGCC
droYak3 3L:3347626-3347942 - TCACCACAGACGAAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGTT------TA--------TCT-TTTCTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAAAGCACG---AGCAAATG---AAATTGGCATTGAGATA--GATGGCTAAATTGAGG-CACCAGTT-----TGT--TTCA-AGTAGTCTAA--------------TTATAATTT---------------------------GGT----GTGGG-C-----------------AGTCAATCTAACACTTAACCAATCTAACCGGCAGTATTTCTT-TTC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGCTGCCCAGTTCGCC
droEug1 scf7180000409524:95508-95823 - TCACCACAGACGAGAGTGACACCGAATACGCCTAC------------AAGAGCCAGAACAATGTATGAAA-TA--TT------TA--------TCTATTTTTC-------------------------CACTTTG-T--TCAAA-TTTATAT--TAG-----TTTT-----TGAGAGCACC---AACAAAAG---AAATTGGCATTGAGATC--GATGACGAAATTTAGG-CACCAATT-----TGT--TTTA-AGTAGTCTAA--------------TTCTAACTT---------------------------GGT----TTCGG-A-----------------TGCCAGTCTAACACGTAACCAGTCTAACCAGCAGTATTTCTT-TTC----------TCTCTTCTAA-----CCCC-TAACCATAACAGACTTTGGGTCGCAGTGG------------TTATTACGGTTCC------AGCGAGATGCCCAGTTCGCC
droBia1 scf7180000302428:10499973-10500289 + TCACCACAGACGAGAGTGACACGGAGTACGCCTAC------------AAGAGCCAGGACAATGTATGAAA-CA-GTT------TA--------TCC-ATTTTC-------------------------CATATTG-T--TAAAT-TTTGTAC--TAG-----TTTT-----TGAGAGCACC---AGCTAAGA---ATATTGGCATTGAGAT---GATGGCCAAATTGAGG-CACCATTT-----TCT--TTCT-CATAGTCTAA--------------TTCCAATTT---------------------------GGT----TTCGGGT-----------------AGCCAGTCTAACACATAACCAGTCTAACCGGCCGTATTTCTTTTTC----------TCTTCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------GGCGAGCTGCCCAGCTCACC
droTak1 scf7180000414445:149027-149348 - TCACCACGGACGAGAGTGACACGGAGTACGCCTAC------------AGGAGCCAGGACAATGTATGAAA-CA-GCT------TC--------TCT-ATTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--AAG-----TTCT-----TGAAAGCACC---ACCGAAACAAAAAATTGGCATTGAGATT--GATGGCGAAATTGAGG-CACCATTT-----TGT--TTCA-AGTAGTCTAA--------------TTCTAATTT---------------------------GGT----GTGGG-T-----------------AGACCATCTAACACGTAACCAGTCTAACCGGCAGTATTTCTTCTTC--------TCTCTCTTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------GGAGAGATGCCCAGTTCGCC
droEle1 scf7180000491268:123766-124114 - TCACCACGGACGAGAGTGAACCCGAGTACGCCTACGGAACGCTCAACAAGAGCCAGAACAATGTATGAGA-AACGTT------TT--------TTC-ATTTAC-------------------------CAT-TTG-T--TAGAA-TTTGTAT-TTAG-----TTTG-----CAAACGCACC---GGCGAAAG--AAAATTGGCATTGAGATC--GATGGCAAAATTGAGG-CACCATTTTTCTTTCC--TTCA-AGTAGTCTAA--------------TTCTAATTT---------------------------GGT----GTGGG-CTTGGGGCT-T-------AGCCAATCTAACACGTAACCAGTCTAACCGGCAGTATCTCTC-CTC----TCT-TCTCTTCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAAATGCCCAGCTCGCC
droRho1 scf7180000779204:208501-208809 + TCACAACAGACGAGAGCGACACGGAGTACCCATATGGAACGCTCAACAAGAGCCAAAACAATGTATGAGA-CACG--------------------A-ATGTTC-------------------------CACTTTG-T--TATAA-TTTGTAT--TAG---------------CAACGCACC---AGCG----------TTGGCAATGAGATC--GATGGCAAAATTGAGG-CACCAGG--------------G-AGTAGCCTAA--------------TTCTAATTT--------------------------TGGT----GTGGG-------TTT-T-------AGCCAATCTAACACATAACCAGTCTAACCGGCAGTATCTCTTTTTC----------TCTCCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------GTACTACGGTTCC------GGCGAAATGCCCAGTTCTCC
droFic1 scf7180000453833:744297-744638 + TCACCACTGACGAGAGCGACACGGAGTACGCCTACGGAACACTCAACAAGAGCCAAAACAATGTATGAGT-CACCTC------CT--------TGC-CTTTCC-------------------------CATCTTG-T--TAGAA-TTTGTATTTTAG-----TTTTG----TGAATGCACC---GACGAAAG---AAATTGGCATTGAGATC--GATGACAAAATTTAGG-CACCATTT-----TGT--TTTCAAGTAGTCTAA--------------TTCTAACTTGG----------------------TTTGGT----GTGGG-------TCC-T-------AGCCAATCTAACACGTAACCAGTCTAACCAGCAGTATCTCTT-TTC----------TCTCTCCTAA-----CCCCGTAACGCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGATGCCCACATCGCC
droKik1 scf7180000302474:424947-425285 - TCACCACCGACGAAAGCGATACAGAGATTGCCTATGGAACGCTCAACAGGAGCCAGAACAATGTATGAGA-ATCCTT------TT-AAGCTC-TCC-TTTCAT--------------------------TTTTAG-T--TAGAT-TTT----------------------------GCACC---AGCGAATG---AAATTGGCACTGAGATC--GAAGGCTAAATTGAGG-CACCAATT-----TCT--TTCC-AGTAGAGTAA----TTCGGAGGGATCCTAACCT---------------------------GGT----GTGGGGT-----------------TGGCCATCTAACACGTAACCAGTCTAACC-------TCTCTT-CTC----TC--TCTCTCTCCTAA-----CCCCGTAACCATAACAGACTTTGGGTCGCAGCGGAGGAGGAGGCGCTTACTACGGTGCC------GGGGAAGTGCCCAGCTCACC
droAna3 scaffold_13337:8073742-8074103 - TCACCACCGACGAGAGCGACACGGAGTACGCCTATGGAACGCTCAACAAGAGCCAGAACAATGTATGAAGACACCCC-CTGCTTT-------CCCA-CTTTTC-------------------------GACTTTG-TTTTAGAT-TTTGTTT--TAG-----TTTTG----TGAGCGCACCTTGAGCGAATG---AAATTGGCATTGCGATC--GATGGCAAAAACGAGG-CACCAATT------GTAGTTTA-AGTAGTTCCA--------------T--TAACTT---------------------------GGTGGAAGTGGG-------GCT-T-------AGCCAGGCTAACACGTAACCAGTCTAACCAGAAGCATTTCTC-TTC--TCTCTTCCACTCTTCTAA-----CCCG-TAACCCTAACAGACACTGGGTCGCAGCGGG---------GCTTACTACGGATCA--GCC-GGCGAGGTGCCCAGCTCGCC
droBip1 scf7180000396541:229789-230156 - TCACCACTGACGAGAGCGACACGGAGTACGCCTATGGAACGCTCAACAAGAGCCAGAACAATGTATGAAGACACCCCCCTGCTTTTT-----CCCA-ACTTTC-------------------------GACTTTG-TTTTAGAT-TTTGTTT--TAG-----TTTTG----TGAGCGCACTTTGAGCGAATG---AAATTGGCATTGAGATC--GATGGCAAAAACGAGG-CACCAATT-----TGTAGTCTA-AGTAGTTTAT----------------TTAACTT---------------------------GGTGGAAGTGGG-------GCT-T-------AGCCAGGCTAACACGTAACCAGTCTAACCAGGAGCATTTCTC-TTCTCTCTCTTCCTCTCTTCTAA-----CCCG-TAACCCTAACAGACACTGGGTCGCAGCGGG---------GCTTACTATGGATCC--A-CGGGCGAGGTGCCCAGCTCGCC
dp5 XR_group3a:146575-146926 - dps_2886 TCACCACCGACGAGAGTGACACGGAGTACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACA-AATACT-----------------CC-ATTACC----------------------TACAACCATG-T--TAGAC-TTTGTTT-TTAG-----TTGA-TTGATGACTGCACC---AGTGATTA---AGATTGGCATTGAGATT--GATGACGAAATTGAGG-CACCATTTATGTTTAT--T-----------------------------TCTAATTA------------------GTAGTC---GGTGG-CGTGGG-------GCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTC-T---CTTTCTCTCTCTCCTCTAA-----CCCG-TAACCCTAACAGACTCTGGGTCGCAGCGG------------CTACTATGCGTCT------GGGGAGATTCCCAGTTCGCC
droPer2 scaffold_23:149936-150287 - TCACCACCGACGAGAGTGACACGGAATACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACA-AATGCT-----------------CC-ATTACC----------------------TACAACCATG-T--TAGAC-TTTGTTT-TTAG-----TTGA-TTGATGACTGCACC---AGTGATTA---AGATTGGCATTGAGATT--GATGACGAAATTGAGG-CACCATTTATGTTTAT--T-----------------------------TCTAATTA------------------GTAGTC---GGTGG-CGTGGG-------GCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTC-T---CTTTCTCTCTCTCCTCTAA-----CCCG-TAACCCTAACAGACTCTGGGTCGCAGCGG------------CTACTATGCGTCT------GGGGAGATTCCCAGTTCGCC
droWil2 scf2_1100000004762:5215207-5215557 + TCACCACCGATGAGAGCGACACGGAATATGCGTATGGAAACCACAACAAGAGTCAGAACAATGTATGAAC-CATTTT---TCTTT-------CAAA-GATTTCTAGTTTAGG-----------------GC-----TTTAATATTTTTGTTT--GAAAATAGTTATC----TGACTGCACC---AAC---------AATTGGCATTGAGATG--GATAGCAAATTTGGGGTCACCAGTT------GT--GTCACAGTAGTTTTAGTTATT--------TTCTAACCT---------------------------GGT----GTAGGGT-----TTT-T-------AGCTAATCTAACAAATAATCTGTCTAACCAACCAAATTTCTT--TA----------TCTCTTCTAA-----CCCT-TAACCCTAACAGACTTTGGGTCGTAGCGG------------TTACTATGCGTCC------AGTGAGATGCCCAGCTCACC
droVir3 scaffold_13049:6216240-6216540 + dvi_18614 TCACCACTGACGAGAGCGACACGGAGTATGCCTACGGCACGCTCAACAGGAGCCAGAACAATGTATGAA--CAGGT-------TA--------TCC-TTTATC--------------------------TCTTAG-T--TTAAG-TTTAGAT---------------------TGTGCACC---AACG--------AATTGGCATTGATTTA--ACTGACGAAAT------------------------------------------------------TCTCACCTGGTGTCGGTATCAATTTACTAGTA---G----C---------TGTAGCTGT-------AACTGCTCTAACC-CTAATCTGTCTAACCAACCCAATCTT----TG----------TCTCTT----GCTAACCTT-------TAACAGACTCTGGGTCGTGGAGGC---------GCTTATTGTAGCTCG------GGTGATATGTCCAGCCCGTC
droMoj3 scaffold_6680:4537804-4538105 + dmo_2345 TCACCACAGACGAGAGCGACACGGAATATGCCTATGGCACGCTCAACAGGAGCCAGAACAATGTATGAA--CAGGTT------T----------CC-ATTTCC-------------------------GAC-TTGAACTTAGAT-TTT-------AG-----ACTTT----AGACTGCACC---AATG--------AATTGGCATTG-----------------TTGAGA-C-----------------------------------------------TCTCACCTGGTGTCGGTGT---------AGTT---G----T---------TGTAGTTGTA------ACTGAATCTAACC-CTAATCTCTCTAACCAACCAAATGTCTCTTT------------CTCTT----GCTAACCCT-------TAACAGACTCTGGGTCGTGGAGGA------GGTGCTTACTATGGCTCGCAGTCGGGCGATCTGCCCAGCTCGCC
droGri2 scaffold_15072:37166-37497 + TCACCACCGACGAGAGCGACACCGAATACGCCTACAGCACACTCAATCGAAGCCAGAACAATGTATGAA--CAGGTT------T---------TCT-AG-------CTTAAGTTTAAACAATATTTATTAAGTTG-T--TA-------GTAT--TTG-----CTTT-----TGACTGCACC---AACAAAAC---AAATTGGCATTGATTTAATACCGATGA----------------------------------------AA--------------TTCTCACTTGGTGTCGGTGT------------A---G----C---------TGTAGCTGTAACT------GCTCCTAAC-CCTAATCTCTCTAACCAACCGATTCTCCGTTTC----------TCT-TTCTAA-----T-GC-TAACCCTAACAGATTGTGGGTCGCGGCGCA---------GTCTACTACGGCTCCCAGTCGGGTGATTTGCCAAGCTCGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCACCACAGACGAAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGTT------TA--------TTA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAAAGCACC---AGCAAATG---AAATTGGCATTGAGATG--AATGGCAAAATTGAAG-CACCAATT-----TGT--TTCA-AGTAGTCTAG--------------CTATAATA-------------------------TCTGGT----CTGGG-T-----------------AGCAAATCTAACACGTAACCGATCTAACCGGCAGTATTTCTT-TTC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAAATGCGCAGTTCGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................GTACGCCTAT------------AGAAGCCAGAACAATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200200000000000000
................................TAT------------AGAAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.........................GTACGCCTAT------------AGAAGCCAGAACAATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.........................GTACGCCTAT------------AGAAGCCAGAACAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
..................ACACCGAGTACGCCTAT------------AGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.................................AT------------AGAAGCCAGAACAATGTATGAAA-C.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
............................................................................................................................................................................................................TTGAGATG--AATGGCAAAATTG..................................................................................................................................................................................................................................................................................2111.00100000100000000000
droSec2
TCACCACTGACGAAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGTT------TA--------TCA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAGAGCACG---AGCAAATG---AAATTGGCATTGAGATG--AATGGCAAAATTGAAG-CACCAATT-----TGT--TTCA-AGTAGTCTAG--------------CTATAATA-------------------------TCTGGT----GTGGG-T-----------------AGCAAATCTAACACGTAACCGATCTAACCGGCAATATTTCTT-TTC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACATTGGGTCGCAGCGG------------TTACTACGGATCC------AGCGAAATGCACAGTTCGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGG------------TTACTACGGATCC------AGC.................2411.0010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC------AGCGAAATGCACAGTT....2011.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TTACTACGGATCC------AGCGAAATGCACA.......2711.0011000
...............................................................................................................................................................................AGCACG---AGCAAATG---AAATTGGC..........................................................................................................................................................................................................................................................................................................2211.0010100
..ACCACTGACGAAAGTGACACCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGG------------TTACTACGGATCC------AGCG................2511.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACGGATCC------AGCGAAATGCACAGT.....2611.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACGGATCC------AGCGTT..............1911.0010001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGG------------TTACTACGGATCC------AG..................2411.0010001
....................................................................................................................................................................................G---AGCAAATG---AAATTGGCATTGAGATG--...............................................................................................................................................................................................................................................................................................2611.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGG------------TTACTACGGATC...........................2111.0011000
dm3
TCACCACAGACGAAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CATGTT------TA--------TCA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAAAGCACC---AGCAAAAG---AAATTGGCATTGAGATG--AATTGCTAAATTGAAG-CACCAATT-----TGT--TTAA-AGTAGTCTAG--------------TTCTAATA-------------------------TCTGGT----GTGGGGT-----------------AGCAAATCTAACACGTAACCGATCTAACCAGCAGTATTTCTT-TTC----------TCTCCTCTAA-----CCTC-TAATCATAACAGACTTTGGGTCGCAGCGG------------TTACTATGGTTCC------AGCGAAATGCCCAGTTCGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................TAA-----CCTC-TAATCATAACAGACT.................................................................2219.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGG------------TTACTATGGTTC...........................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000020000000000000000000000000010000000000000000
..................ACACCGAGTACGCCTAT------------AGAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TTACTATGGTTCC------AGCGAAA.............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TAT------------AGAAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGTCGCAGCGG------------TTAC...................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CACCGAGTACGCCTAT------------AGAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG------------TTACTATGGTTCC------AGC.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AGCCAGAACAATGTATGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AAAGTGACACCGAGTACGCCTAT------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAAAGTGACACCGAGTACGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GAGTACGCCTAT------------AGAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGGGTCGCAGCGG------------TT.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
TCACCACAGACGAAAGTGACAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CGAGTACGCCTAT------------AGAAGCCAGAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AG--------------TTCTAATA-------------------------TCTGGT----GTGGGGT-----------------AGCA........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................CACCGAGTACGCCTAT------------AGAAGCCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGTGACACCGAGTACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG------------TTACTATGGTTCC------AGCG................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCACAGACGAAAGTGACACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
............AAAGTGACACCGAGTACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGG------------TTACTATGGTTCC------....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC------AGCGAAATGCCCAGTT....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGACTTTGGGTCGCAGCGG------------T......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................GTACGCCTAT------------AGAAGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGTTCC------AGCGAAATGCCCAGTT....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CAATT-----TGT--TTAA-AGTAGT.................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GT----GTGGGGT-----------------AGCAAATCTAA.................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................ATA-------------------------TCTGGT----GTGGGGT-----------------AGC.........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................CTAT------------AGAAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTCC------AGCGAAATGCCCA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGTGACACCGAGTACGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCGCAGCGG------------TTACTA.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AA-----CCTC-TAATCATAACAG....................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCC------AGCGAAATGCCCAGT.....2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGGT----GTGGGGT-----------------AGCAAATCTAACAC..............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGTCGCAGCGG------------TTA....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................TACGCCTAT------------AGAAGCCAGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ACCGAGTACGCCTAT------------AGAAGCCAGAACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GACACCGAGTACGCCTAT------------AGAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CACGTAACCGATCTAACCA..............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TACGCCTAT------------AGAAGCCAGAACAATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCACAGACGAAAGTGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............AGTGACACCGAGTACGCCTAT------------AGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTTGGGTCGCAGCGG------------.......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................ATTGGCATTGAGATG--AATTGC.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................TGACACCGAGTACGCCTAT------------AGAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAAATGCCCAGTTCGC.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAAAGTGACACCGAGTACGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................GCAAATCTAACACGTAACCGA......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAGCGG------------TTACTATGGT.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------TTACTATGGTTCC------AGC.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG------------TTACTATGGTTCC------....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ACACGTAACCGATCTAACCAGC............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGTCGCAGCGG------------TTACTATGGTT............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACGAAAGTGACACCGAGTACGCCTAT------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------TTACTATGGTTCC------AGCGAAA.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............AAAGTGACACCGAGTACGCCTAT------------AGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATGGTTCC------AGCGAAATGC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ACCGAGTACGCCTAT------------AGAAGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......CAGACGAAAGTGACACCGAGTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ACGCCTAT------------AGAAGCCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GAGTACGCCTAT------------AGAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGG------------TTACTATGGTT............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TTACTATGGTTCC------AGCGAAATGCCCAG......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGGTCGCAGCGG------------TT.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................ACGCCTAT------------AGAAGCCAGAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TGAGATG--AATTGCTAAATTGA.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGG------------TTACTATGGTTCC------AGCG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACCACAGACGAAAGTGACACCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG------------TTACTATGGTTCC------AGCGAA..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TA-------------------------TCTGGT----GTGGGGT-----------------AGCAA.......................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CTT-TTC----------TCTCCTCTAA-----CG...................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCACCACAGACGAAAGTGACACCGAGTACGCCAAT------------AGAAGCCAGAACAATGTATGAAA-CACGTT------TA--------CCT-TTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAAAGCACG---AACAAAAG--AAAATTGGCATTGAGA------TGGCTAAATTGAAG-CACCATTT-----TGA--TTCA-AGTAGTCTAG--------------TTCTAATTT---------------------------GGT----GTGGG-T-----------------AGCCAATCTAACAAGTAACCAATCTAACCGGCAGTATTTCTT-TTC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGATGCCCAGTTCGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............GTGACACCGAGTACGCCAAT------------AGAAGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..ACCACAGACGAAAGTGACACCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
TCACCACAGACGAAAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
......................................................................................................................................................................................................................................................................................TTCTAATTT---------------------------GGT----GTGGG-T-----------------AGC.........................................................................................................................................................2111.0011000000
.....................CCGAGTACGCCAAT------------AGAAGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.CACCACAGACGAAAGTGACACCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.....ACAGACGAAAGTGACACCGAGTACGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGG------------TTACTACGGTTCC------AGC.................2411.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACGGTTCC------AGCGAGA.............1911.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TTACTACGGTTCC------AGCGAGA.............2111.0010100000
droYak3
TCACCACAGACGAAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGTT------TA--------TCT-TTTCTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT-----TGAAAGCACG---AGCAAATG---AAATTGGCATTGAGATA--GATGGCTAAATTGAGG-CACCAGTT-----TGT--TTCA-AGTAGTCTAA--------------TTATAATTT---------------------------GGT----GTGGG-C-----------------AGTCAATCTAACACTTAACCAATCTAACCGGCAGTATTTCTT-TTC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGCTGCCCAGTTCGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................AGTT-----TGT--TTCA-AGTAGTCTAA--------------...............................................................................................................................................................................................................................2111.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGGTTCC------AGCGAGCTGCCCA.......2311.00100000010000
............................................................................................................................................................................................AATG---AAATTGGCATTGAGATA--GAT............................................................................................................................................................................................................................................................................................2411.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TAA-----CCTC-TAACCATAACAG....................................................................1911.00100010000000
........GACGAAAGTGACACCGAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEug1
TCACCACAGACGAGAGTGACACCGAATACGCCTAC------------AAGAGCCAGAACAATGTATGAAA-TA--TT------TA--------TCTATTTTTC-------------------------CACTTTG-T--TCAAA-TTTATAT--TAG-----TTTT-----TGAGAGCACC---AACAAAAG---AAATTGGCATTGAGATC--GATGACGAAATTTAGG-CACCAATT-----TGT--TTTA-AGTAGTCTAA--------------TTCTAACTT---------------------------GGT----TTCGG-A-----------------TGCCAGTCTAACACGTAACCAGTCTAACCAGCAGTATTTCTT-TTC----------TCTCTTCTAA-----CCCC-TAACCATAACAGACTTTGGGTCGCAGTGG------------TTATTACGGTTCC------AGCGAGATGCCCAGTTCGCCSizeHit CountTotal NormTotal
No Reads
droBia1
TCACCACAGACGAGAGTGACACGGAGTACGCCTAC------------AAGAGCCAGGACAATGTATGAAA-CA-GTT------TA--------TCC-ATTTTC-------------------------CATATTG-T--TAAAT-TTTGTAC--TAG-----TTTT-----TGAGAGCACC---AGCTAAGA---ATATTGGCATTGAGAT---GATGGCCAAATTGAGG-CACCATTT-----TCT--TTCT-CATAGTCTAA--------------TTCCAATTT---------------------------GGT----TTCGGGT-----------------AGCCAGTCTAACACATAACCAGTCTAACCGGCCGTATTTCTTTTTC----------TCTTCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------GGCGAGCTGCCCAGCTCACCSizeHit CountTotal NormTotal
No Reads
droTak1
TCACCACGGACGAGAGTGACACGGAGTACGCCTAC------------AGGAGCCAGGACAATGTATGAAA-CA-GCT------TC--------TCT-ATTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--AAG-----TTCT-----TGAAAGCACC---ACCGAAACAAAAAATTGGCATTGAGATT--GATGGCGAAATTGAGG-CACCATTT-----TGT--TTCA-AGTAGTCTAA--------------TTCTAATTT---------------------------GGT----GTGGG-T-----------------AGACCATCTAACACGTAACCAGTCTAACCGGCAGTATTTCTTCTTC--------TCTCTCTTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------GGAGAGATGCCCAGTTCGCCSizeHit CountTotal NormTotal
No Reads
droEle1
TCACCACGGACGAGAGTGAACCCGAGTACGCCTACGGAACGCTCAACAAGAGCCAGAACAATGTATGAGA-AACGTT------TT--------TTC-ATTTAC-------------------------CAT-TTG-T--TAGAA-TTTGTAT-TTAG-----TTTG-----CAAACGCACC---GGCGAAAG--AAAATTGGCATTGAGATC--GATGGCAAAATTGAGG-CACCATTTTTCTTTCC--TTCA-AGTAGTCTAA--------------TTCTAATTT---------------------------GGT----GTGGG-CTTGGGGCT-T-------AGCCAATCTAACACGTAACCAGTCTAACCGGCAGTATCTCTC-CTC----TCT-TCTCTTCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAAATGCCCAGCTCGCCSizeHit CountTotal NormTotal
No Reads
droRho1
TCACAACAGACGAGAGCGACACGGAGTACCCATATGGAACGCTCAACAAGAGCCAAAACAATGTATGAGA-CACG--------------------A-ATGTTC-------------------------CACTTTG-T--TATAA-TTTGTAT--TAG---------------CAACGCACC---AGCG----------TTGGCAATGAGATC--GATGGCAAAATTGAGG-CACCAGG--------------G-AGTAGCCTAA--------------TTCTAATTT--------------------------TGGT----GTGGG-------TTT-T-------AGCCAATCTAACACATAACCAGTCTAACCGGCAGTATCTCTTTTTC----------TCTCCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------GTACTACGGTTCC------GGCGAAATGCCCAGTTCTCCSizeHit CountTotal NormTotal
No Reads
droFic1
TCACCACTGACGAGAGCGACACGGAGTACGCCTACGGAACACTCAACAAGAGCCAAAACAATGTATGAGT-CACCTC------CT--------TGC-CTTTCC-------------------------CATCTTG-T--TAGAA-TTTGTATTTTAG-----TTTTG----TGAATGCACC---GACGAAAG---AAATTGGCATTGAGATC--GATGACAAAATTTAGG-CACCATTT-----TGT--TTTCAAGTAGTCTAA--------------TTCTAACTTGG----------------------TTTGGT----GTGGG-------TCC-T-------AGCCAATCTAACACGTAACCAGTCTAACCAGCAGTATCTCTT-TTC----------TCTCTCCTAA-----CCCCGTAACGCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGATGCCCACATCGCCSizeHit CountTotal NormTotal
No Reads
droKik1
TCACCACCGACGAAAGCGATACAGAGATTGCCTATGGAACGCTCAACAGGAGCCAGAACAATGTATGAGA-ATCCTT------TT-AAGCTC-TCC-TTTCAT--------------------------TTTTAG-T--TAGAT-TTT----------------------------GCACC---AGCGAATG---AAATTGGCACTGAGATC--GAAGGCTAAATTGAGG-CACCAATT-----TCT--TTCC-AGTAGAGTAA----TTCGGAGGGATCCTAACCT---------------------------GGT----GTGGGGT-----------------TGGCCATCTAACACGTAACCAGTCTAACC-------TCTCTT-CTC----TC--TCTCTCTCCTAA-----CCCCGTAACCATAACAGACTTTGGGTCGCAGCGGAGGAGGAGGCGCTTACTACGGTGCC------GGGGAAGTGCCCAGCTCACCSizeHit CountTotal NormTotal
No Reads
droAna3
TCACCACCGACGAGAGCGACACGGAGTACGCCTATGGAACGCTCAACAAGAGCCAGAACAATGTATGAAGACACCCC-CTGCTTT-------CCCA-CTTTTC-------------------------GACTTTG-TTTTAGAT-TTTGTTT--TAG-----TTTTG----TGAGCGCACCTTGAGCGAATG---AAATTGGCATTGCGATC--GATGGCAAAAACGAGG-CACCAATT------GTAGTTTA-AGTAGTTCCA--------------T--TAACTT---------------------------GGTGGAAGTGGG-------GCT-T-------AGCCAGGCTAACACGTAACCAGTCTAACCAGAAGCATTTCTC-TTC--TCTCTTCCACTCTTCTAA-----CCCG-TAACCCTAACAGACACTGGGTCGCAGCGGG---------GCTTACTACGGATCA--GCC-GGCGAGGTGCCCAGCTCGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................AGTACGCCTATGGAACGCTCAACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
TCACCACCGACGAGAGCGACACGGAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.........................GTACGCCTATGGAACGCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............GAGCGACACGGAGTACGCCTATGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
...............................CTATGGAACGCTCAACAAGAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
........GACGAGAGCGACACGGAGTACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
....CACCGACGAGAGCGACACGGAGTACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................GACACGGAGTACGCCTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCA--GCC-GGCGAGGTGCCCAGC.....2311.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACTGGGTCGCAGCGGG---------G........................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGGG---------GCTTACTACGG..............................2011.001010000
....................................................................................................................................................................TTG----TGAGCGCACCTTGAGC..........................................................................................................................................................................................................................................................................................................................1911.001010000
...............................CTATGGAACGCTCAACAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
......................................................................................................................................................................................................................................................................CA--------------T--TAACTT---------------------------GGTGGAAGT..................................................................................................................................................................................1811.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCGCAGCGGG---------GCTTACTAC................................2311.001100000
......................GGAGTACGCCTATGGAACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droBip1
TCACCACTGACGAGAGCGACACGGAGTACGCCTATGGAACGCTCAACAAGAGCCAGAACAATGTATGAAGACACCCCCCTGCTTTTT-----CCCA-ACTTTC-------------------------GACTTTG-TTTTAGAT-TTTGTTT--TAG-----TTTTG----TGAGCGCACTTTGAGCGAATG---AAATTGGCATTGAGATC--GATGGCAAAAACGAGG-CACCAATT-----TGTAGTCTA-AGTAGTTTAT----------------TTAACTT---------------------------GGTGGAAGTGGG-------GCT-T-------AGCCAGGCTAACACGTAACCAGTCTAACCAGGAGCATTTCTC-TTCTCTCTCTTCCTCTCTTCTAA-----CCCG-TAACCCTAACAGACACTGGGTCGCAGCGGG---------GCTTACTATGGATCC--A-CGGGCGAGGTGCCCAGCTCGCCSizeHit CountTotal NormTotal
No Reads
dp5
TCACCACCGACGAGAGTGACACGGAGTACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACA-AATACT-----------------CC-ATTACC----------------------TACAACCATG-T--TAGAC-TTTGTTT-TTAG-----TTGA-TTGATGACTGCACC---AGTGATTA---AGATTGGCATTGAGATT--GATGACGAAATTGAGG-CACCATTTATGTTTAT--T-----------------------------TCTAATTA------------------GTAGTC---GGTGG-CGTGGG-------GCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTC-T---CTTTCTCTCTCTCCTCTAA-----CCCG-TAACCCTAACAGACTCTGGGTCGCAGCGG------------CTACTATGCGTCT------GGGGAGATTCCCAGTTCGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................AACAAGAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...............GTGACACGGAGTACGCCTACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................ATTGAGATT--GATGACGAAATTGAGG-C.............................................................................................................................................................................................................................................................................2611.0010000000001
.....ACCGACGAGAGTGACACGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATGCGTCT------GGGGAGATTCCC........2411.0010100000000
...................................GGGACGCTCAACAAGAGCCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................ACACGGAGTACGCCTACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................GACACGGAGTACGCCTACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................GTACGCCTACGGGACGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................GACACGGAGTACGCCTACGGGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGG------------CTACTATGCGTCT------....................2011.0010010000000
...............................CTACGGGACGCTCAACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------CTACTATGCGTCT------GGG.................1811.0010100000000
...................CACGGAGTACGCCTACGGGACGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...............................................................................................................................................................................TGCACC---AGTGATTA---AGATTGC...........................................................................................................................................................................................................................................................................................................2120.5010100000000
droPer2
TCACCACCGACGAGAGTGACACGGAATACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACA-AATGCT-----------------CC-ATTACC----------------------TACAACCATG-T--TAGAC-TTTGTTT-TTAG-----TTGA-TTGATGACTGCACC---AGTGATTA---AGATTGGCATTGAGATT--GATGACGAAATTGAGG-CACCATTTATGTTTAT--T-----------------------------TCTAATTA------------------GTAGTC---GGTGG-CGTGGG-------GCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTC-T---CTTTCTCTCTCTCCTCTAA-----CCCG-TAACCCTAACAGACTCTGGGTCGCAGCGG------------CTACTATGCGTCT------GGGGAGATTCCCAGTTCGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................GACACGGAATACGCCTACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCT------GGGGAGATTCCC........1911.001010000
...........GAGAGTGACACGGAATACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...CCACCGACGAGAGTGACACGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.................GACACGGAATACGCCTACGGGACGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................TCTC-T---CTTTCTCTCTCTCCT..............................................................................................2030.331000010
...........................................CAACAAGAGCCAGAACAATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171100000
droWil2
TCACCACCGATGAGAGCGACACGGAATATGCGTATGGAAACCACAACAAGAGTCAGAACAATGTATGAAC-CATTTT---TCTTT-------CAAA-GATTTCTAGTTTAGG-----------------GC-----TTTAATATTTTTGTTT--GAAAATAGTTATC----TGACTGCACC---AAC---------AATTGGCATTGAGATG--GATAGCAAATTTGGGGTCACCAGTT------GT--GTCACAGTAGTTTTAGTTATT--------TTCTAACCT---------------------------GGT----GTAGGGT-----TTT-T-------AGCTAATCTAACAAATAATCTGTCTAACCAACCAAATTTCTT--TA----------TCTCTTCTAA-----CCCT-TAACCCTAACAGACTTTGGGTCGTAGCGG------------TTACTATGCGTCC------AGTGAGATGCCCAGCTCACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................AACAAGAGTCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
.........ATGAGAGCGACACGGAATATGCGTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.................GACACGGAATATGCGTATGGAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGGGTCGTAGCGG------------TTACTA.................................2311.00110000
............AGAGCGACACGGAATATGCGTATGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
........GATGAGAGCGACACGGAATATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------TTACTATGCGTCC------AGTGAGATGC..........2511.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTAGCGG------------TTACTATGC..............................2011.00100100
..........TGAGAGCGACACGGAATATGCGTATGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.....ACCGATGAGAGCGACACGGAATATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
........GATGAGAGCGACACGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...........GAGAGCGACACGGAATATGCGTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCTAA-----CCCT-TAACCCTAACAG....................................................................2511.00110000
........GATGAGAGCGACACGGAATATGCGTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGGGTCGTAGCGG------------TTACTC.................................2311.00110000
droVir3
TCACCACTGACGAGAGCGACACGGAGTATGCCTACGGCACGCTCAACAGGAGCCAGAACAATGTATGAA--CAGGT-------TA--------TCC-TTTATC--------------------------TCTTAG-T--TTAAG-TTTAGAT---------------------TGTGCACC---AACG--------AATTGGCATTGATTTA--ACTGACGAAAT------------------------------------------------------TCTCACCTGGTGTCGGTATCAATTTACTAGTA---G----C---------TGTAGCTGT-------AACTGCTCTAACC-CTAATCTGTCTAACCAACCCAATCTT----TG----------TCTCTT----GCTAACCTT-------TAACAGACTCTGGGTCGTGGAGGC---------GCTTATTGTAGCTCG------GGTGATATGTCCAGCCCGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........GACGAGAGCGACACGGAGTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000010000100000000000000000000000000000000000000000000000
........GACGAGAGCGACACGGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
...............................CTACGGCACGCTCAACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATCAATTTACTAGTA---G----C---------TGTAG.......................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
....................ACGGAGTATGCCTACGGCACGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.............................................ACAGGAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000010000
......CTGACGAGAGCGACACGGAGTATGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000100000000000000000000000000000000000000000
............................................AACAGGAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.....ACTGACGAGAGCGACACGGAGTATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
...............................CTACGGCACGCTCAACAGGAGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................TACTAGTA---G----C---------TGTAGCTGT-------............................................................................................................................................................1911.001000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGGC---------GCTTATTGTAGCTC...........................2311.001000000000000010000000000000000000000000000000000000000000000000
TCACCACTGACGAGAGCGACACGGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
............AGAGCGACACGGAGTATGCCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTGTAGCTCG------GGTGAT..............2111.001001000000000000000000000000000000000000000000000000000000000000
.........................GTATGCCTACGGCACGCTCAACAGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ATTTA--ACTGACGAAAT------------------------------------------------------TCTCACCTGGTGTCG...............................................................................................................................................................................................................3111.001000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................................................................................................................................................................................................................TAGTA---G----C---------TGTAGCTGT-------AACTGCT.....................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................ATCTGTCTAACCAACCCAATC......................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
.........ACGAGAGCGACACGGAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATCAATTTACTAGTA---G----C---------TGTAA.......................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
..............................................................GTATGAA--CAGGT-------TA--------TCC-TTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................TCAACAGGAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
....CACTGACGAGAGCGACACGGAGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------GCTTATTGTAGCTCG------GGC.................1911.001000000000000000000000000000001000000000000000000000000000000000
...........................................CAACAGGAGCCAGAACAATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.672101000000000000000000000000000000000000000000000000000000000000
.............................................ACAGGAGCCAGAACAATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071000000000000000000000000000000100000000000000000000000000000000
...........................................CAACAGGAGCCAGAACAATACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000000000000000000000000000000000000000000000000000000000000
droMoj3
TCACCACAGACGAGAGCGACACGGAATATGCCTATGGCACGCTCAACAGGAGCCAGAACAATGTATGAA--CAGGTT------T----------CC-ATTTCC-------------------------GAC-TTGAACTTAGAT-TTT-------AG-----ACTTT----AGACTGCACC---AATG--------AATTGGCATTG-----------------TTGAGA-C-----------------------------------------------TCTCACCTGGTGTCGGTGT---------AGTT---G----T---------TGTAGTTGTA------ACTGAATCTAACC-CTAATCTCTCTAACCAACCAAATGTCTCTTT------------CTCTT----GCTAACCCT-------TAACAGACTCTGGGTCGTGGAGGA------GGTGCTTACTATGGCTCGCAGTCGGGCGATCTGCCCAGCTCGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................AACAGGAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003100110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGTCGTGGAGGA------GGTGCTTACT..................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTATGGCTCGCAGTCGGG..................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................CTCTTT------------CTCTT----GCTAACCCT-------TAACAG....................................................................2611.001000010
............AGAGCGACACGGAATATGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................GTATGAA--CAGGTT------T----------CC-ATTTCC-------------------------GAC-TTG..............................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................TCAACAGGAGCCAGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................CTCTT----GCTAACCCT-------TAACA.....................................................................1911.001000010
.......................................................................................................................................................................................................................................................................................TCTCACCTGGTGTCGGTGT---------AGTT---G----T---------TG..........................................................................................................................................................................2711.001000001
.........ACGAGAGCGACACGGAATATGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCTCGCAGTCGGGCGATC.............2211.001100000
...................................................................................................................................................................................................................................................................................................................AGTT---G----T---------TGTAGTTGTA------ACT.........................................................................................................................................................1911.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGGAGGA------GGTGCTTACTATGGCT............................2711.001100000
.CACCACAGACGAGAGCGACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................CGACACGGAATATGCCTATGGCACGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
............................................AACAGGAGCCAGAACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331000010
droGri2
TCACCACCGACGAGAGCGACACCGAATACGCCTACAGCACACTCAATCGAAGCCAGAACAATGTATGAA--CAGGTT------T---------TCT-AG-------CTTAAGTTTAAACAATATTTATTAAGTTG-T--TA-------GTAT--TTG-----CTTT-----TGACTGCACC---AACAAAAC---AAATTGGCATTGATTTAATACCGATGA----------------------------------------AA--------------TTCTCACTTGGTGTCGGTGT------------A---G----C---------TGTAGCTGTAACT------GCTCCTAAC-CCTAATCTCTCTAACCAACCGATTCTCCGTTTC----------TCT-TTCTAA-----T-GC-TAACCCTAACAGATTGTGGGTCGCGGCGCA---------GTCTACTACGGCTCCCAGTCGGGTGATTTGCCAAGCTCGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................GACACCGAATACGCCTACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
................................TACAGCACACTCAATCGAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110

Generated: 05/18/2015 at 08:42 AM