ID:

dsi_7772

 Coordinate:

2l:20879730-20879879 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.3 -4.3 -4.0

Flybase annnotation

CDS [2l_20879880_20880076_-]; exon [2l_20879880_20880076_-]; intron [2l_20875388_20879879_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAACAAACGCTCTCGTCAAGAGTCGCTGTGGATGCCATGAAAGATGTAAAGTGAGTACCAAAATGATTTTCAGAGGGGTTGTGTAAAAAAATTTAAATGAATAGAGAAATAAGAAAAATCAATTATTATTTATTCAAAACATGAGAGTCGAGATCTCAGACTTACTTAGAAAGGCATATCAATAAAAATTTGATAAAAAATAAAAATATTTTGAAAAATGTAGGAGAACCAGTTTTTCTGCCCTGTGGTC
**********************************************************************************************************************************...........(((((.......)))))................................************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 M023
head
 M053
female body
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
.................................................................................................................................................................TTACTTAGAAAGGCATATCAATAAAAATT............................................................ 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
........................................AAGATGTAAAGTGAGTACCAAAA........................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................TCAGAGGGGTCGTGTAAA................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................TGGATGCCATGAAAGATGTAAAGTGA.................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................TCGAGATCTCAGACTTACTT................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................TCAGACTTACTTAGAAAGG............................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................TATTCAAAACATGAGAGTCGAGATC............................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................AGATGTAAAGTGAGTACCAAAATGA........................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............TCGTCAAGAGTCGCTGTGGATGCCA..................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........CTCTCGTCAAGAGTCGCTGTGGATGCCAT.................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................GGGGTTGTGTAAAAAAATTTAAATGAA..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................AAGAGTCGCTGTGGATGCCATGAAAGA.............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................AAGAGTCGCTGTGGATGCCATGAAAG............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................AGAGTCGCTGTGGATGCCATGAAAGT.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GATAAAAATCATTTGAAAAATGTAGG.......................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCTCAGACTTACTTAGAAAGGCATA........................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TATTTTGAAAACGGTGGGAGA....................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.....................................................................TCAGAGGGGTCGTGGAAAAAAAA.............................................................................................................................................................. 23 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.....................................................................TCAGAGGGGTCGTGGAAATAA................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TCAGAGGGGTCGTGTA..................................................................................................................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TCAGAGAGTTTGTGTAAA................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTGGAACAATGTAGGAGA....................... 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0
.....................................................................TCAGAGGGGTCGTGAAA.................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAAGTGTAGGAGAATCGGTTT............... 21 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0
...................GAGTCGTTGTGAATGCCA..................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0
........GCTCTCGTCGAGAGTGCCT............................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TACCAGTTTTTCTGC......... 15 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................GCGATGAAAGACGTAA......................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................CAATATTTTTTAAAATGTAGG.......................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTGTTTGCGAGAGCAGTTCTCAGCGACACCTACGGTACTTTCTACATTTCACTCATGGTTTTACTAAAAGTCTCCCCAACACATTTTTTTAAATTTACTTATCTCTTTATTCTTTTTAGTTAATAATAAATAAGTTTTGTACTCTCAGCTCTAGAGTCTGAATGAATCTTTCCGTATAGTTATTTTTAAACTATTTTTTATTTTTATAAAACTTTTTACATCCTCTTGGTCAAAAAGACGGGACACCAG
************************************************************...........(((((.......)))))................................********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 O001
Testis
 M023
head
 SRR902009
testis
.........................................................................................................................................................AGAGTCTGAATGAATCTTTCCGTATAGT..................................................................... 28 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
................................ACGGTACTTTCTACATTTCACTCAT................................................................................................................................................................................................. 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0
.....TTGCGAGAGCAGTTCTCAGCGACACCT.......................................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.............................................................TTACTAAAAGTCTCCCCAACACATTTT.................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........CGAGCGCAGGTCTCAGCGGC.............................................................................................................................................................................................................................. 20 3 6 1.67 10 4 0 0 0 3 2 1 0 0 0
........CGAGCGCAGGTCTCAGCG................................................................................................................................................................................................................................ 18 2 4 1.25 5 2 0 0 0 2 1 0 0 0 0
.......CCGAGCGCAGGTCTCAGCG................................................................................................................................................................................................................................ 19 3 12 1.08 13 6 1 0 2 4 0 0 0 0 0
......TGCGAGAGCAGTTCTCAGCGACACCT.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................TACTAAAAGTCTCCCCAACACATTT................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................CTGAATGAATCTTTCCGTATAGTTAT.................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................CTGAATGAATCTTTCCGTAT........................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................AGTCTCCCCAACACATTTTTTTAAATT.......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................CACCTACGGTACTTTCTACATTTC....................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................CGGTACTTTCTACATTTCACTCATGGTT............................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................AGAGTCTGAATGAATCTTTCCGTAT........................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......CCGAGCGCAGGTCTCAGCGA............................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
........CGAGCGCAGGTCTCAGC................................................................................................................................................................................................................................. 17 2 12 0.25 3 1 0 0 1 0 1 0 0 0 0
..........................................................................................................................................................................................................ATTTTTAAAACTCTTTACATCCT......................... 23 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.......CCGAGCGCAGGTCTCAGC................................................................................................................................................................................................................................. 18 3 20 0.20 4 2 0 0 2 0 0 0 0 0 0
................................................................................................................................................CTCATCTTTAGTGTCTGAAT...................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
..TGTTTGAGAGAGCAGT........................................................................................................................................................................................................................................ 16 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0
........CGAGCGCAGGTCTCAGCGG............................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 1 0 0 0 0 1
..CGTTTGAGAGAGCAGTTCTA.................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0
............................................................................CCAACACGCTTTTTTAAA............................................................................................................................................................ 18 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................TCAGTTTTGTACTAGCAGC.................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:20879680-20879929 - dsi_7772 CAACAA---ACGCTCTCGTCAAGA---GTCGCTGTGGATGCCATG----AAAGATGTAAAGTGAGTAC---CAAAATGATTTTCAGA----------------GGGGTTGTGTAAAAAAATT---------------------------------TAAATGAATAGAGAAATAAGAAAAATCAATTA--------------TTA--TTTATTCAAAACAT-----GAG------------------------------------------------------AGTCGAGATC--------------------------------------TCAGACTT---------------------------------ACTTAGAA----------AGGCATATCAATAAAAAT------------------------------------------------------------------TTGATAAAAAATAAAA--------------------------------------------------------ATA--T-TTTGAAA--------------AATGTAGGAGAACCAGTTTTTCTG--CCCTGTGGTC
droSec2 scaffold_28:59954-60214 - CAACAA---ACGCTCTCGTCAAGA---GTCGCTATGGATGCCATG----AAGGATGTAAAGTGAGTAC---CAAAATGATTTTCAGAGGAGGGTTGCATCAAAGGGGTTGTGTA-AAAAATT---------------------------------TAAATGAATAGAGAAATAAGAAAAATCAATAA--------------TTA--TTTATTCAAAACAT-----GAG------------------------------------------------------AGTCGAGATC--------------------------------------TCAGACTT---------------------------------ACTTAGAA----------AGGCATATCAATAAAAAT------------------------------------------------------------------TTGATAAAA---------------------------------------------------------AAA---ATT--T-TTTGAAA--------------AATGTAGGAGAACCAGTTTTTCTG--CCCTGTGGTC
dm3 chr2RHet:2448267-2448436 - AAATTG---ACAAGA---------------------------------------------------------------------------------------------------------------------------------------------------CTAATAAAATTATAAAAAATATTTA--------------AAATTTTTTTTAAAAATGT-----GGGCGTGACAGTTTCGGGCGGTTT--------------------------T-------A------TAAAAAAAATTTTT-------------------------------------TGCAAATCGATAAAAATTTACAATAC---T---------------------------------------------------------------------------------------------------------------------------------------------AATAAAAATATGAAA------AAAGT---ATCAGCA---------------------------------------CATTTATCTG--AAGTATGGGC
droEre2 scaffold_4512:117806-118012 + AAAAAA---ATGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATCA--------------AAATATTTTTCAAAAGTGT-----GGATGTGTCAGTTTTGGGTGGCTT--------------------------GTGGGCGTG------GCAAAACCTATTTT-------------------------------------GGCATATTGTTAGAAGTTGACAAGATATTTAATTAAAA----------AGTGATAGAAACAAACAC------------------------------------------------------------------AAGATACAAAACAAAAA-------------------------------------------------------CTT--T-TCTCAAA--------------AGTATATGCCTGATAGTTTTGGGTGTTAGAGTGGGC
droYak3 v2_chrUn_003:37199-37496 - CAAGAGAGAACGCTATAGTCGAG-----TCCCCGT-TACTCAGCTAGAGGAAGTTCGAAGGAGAGT---------------TTTCCACACTGACAGTTTTTGGCGGTTTGTCGATAGAAATT---------------------------------TACAAGACTAATACAAAAATGAAAAAATATCA--------------AAACATTTTTCAAAAGTGT-----GGGCGTGGCAGCTTTGGGCGGTTT--------------------------GTGGGCATG------GCAAAAAGTTTTTT-------------------------------------GGCAGATCGATAGAAATTTATAAGAC---T---------------------------------------------------------------------------------------------------------------------------------------------AATACAAAAATGAAA------AAA-T---ATCAAAATATTTTTCAAA--------------ATTGTGGGTATGGCAGTTTTGGGCG-ATTTGTGGGC
droEug1 scf7180000409466:4893689-4893961 - AGCCTA---AGCCTCTCGCCAAATGT---CGCGA----------------------------AAATAA---CGAAA-------------------------------------------AATCAGCTGATT--ACAGTGCAGCTGAAAAATATA-------------------------------TA--------------AATGGTGGTAAATAAATGC-----AATG------------AGC-------------AACAGATTTAGACTGGCCGAAAGTGAGT---------AAACAGTTCTAAAATATAAATATATATTTATATTACTTAT-------TTC--TTGCG------------------------AAAA----------AACTATATCTGTA----------------------------------------------------------CAGGTAGAAAAATTTAATTGAAATTCAAAATTCTTCAAAAAATGTTTACCTGCATTTTGTAAG---------------------------------------------------------------CAGTTTTTATG--ACTTG----T
droBia1 scf7180000300043:29458-29579 - AAAAAT---TAAAA-------------------------------------------------------------------------------------------------------------------------------------------------TAAAAATAAGAATTAATAAAATTAAATA--------------TTA--AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAA-------------------------------------------------------------------------------------------------------------AATTTTTAAAATAATAATAATGCAAATAATAATAAT---AGTA--ATA-ATGAAA------------------------------------------CTGATTATTTAT--TCCAATTGTA
droTak1 scf7180000413457:188964-189159 - CCAAAA---AAATAG--------------------------------------------------------------------------------------------------------------TAGGTTTTAAAGAGTTTTTGAAAAATAATTTAAGTGTATAGAGATTTG----------------------------------------------------------------------GTATAGCGGTATACAAATATTT------------------------ATTTTAAACA------------------------------CCTTT-------TTCAAATGTGGAAAAATTACAAAT---TTTAATTTTAAAATGTTGGAAAAGCTTATTAG-------------------------------------------------------------------------------------------------------------ACAAAA-------CT---TCTA--TTA-AAAACA------------------------------------------TTAGTTATGAAA--ATCTATGAAA
droEle1 scf7180000490970:1098414-1098486 + CAACAA---ACTCTCTCGTCGACAAA---CGCTGTTGATGCCGCC----AAGGAAGTAAAGTGAGTAAAACCAAA--GATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droRho1 scf7180000770685:9225-9378 + GGTTGT---TAAG------------------------------------------------------------------------------------------------------AATAATT---------------------------------CTTATGAATAATAAGTTTCAAAAAATTAATTA--------------TTA--TTTTTTTAAGATACGGAATGAA------T------------------------------------------------------GTTTCATTCA------------------------------CTTAAATTAATT--------------------------------TTGTAA----------ATTTAATTCG-----------------------------------------------------------------------------------------------------------------AATTTTAATTAATTA------GTAGTAAAA---ATG--T-TTAATAA--------------AA------------------------------TTTA
droFic1 scf7180000452378:37954-38010 - CAGCAA---ACTCTCTCATCGGCGAA---CGCCGTGGATGCCGCC----AAGGAAGTGAAGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302390:622470-622528 - CAACAG---ACGCTGTCCTCTGCAAATGCAGCTGTGGATGCGGCC----AAGGAAGTCAAGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:9201735-9201799 - CAACAA---ACCCTTTCGTCGGCCAACGCAGCTGTAGATGCAGCC----AAGGAAGTCAAGTTAGTAA---AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396535:1760809-1760875 - CAACAA---ACACTATCGTCGGCCAATGCAGCTGTAGATGCAGCC----AAGGAAGTCAAGTTAGTAA---AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA
dp5 Unknown_singleton_2135:761-853 + AAAAAA---ATAATAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAACA--------------TTA--ACAT------------------------------------------------------------------------------------------------------------------------TAACATTAACA--------------------------------TTAAAA----------ACACAATAAAATAAGAGC------------------------------------------------------------------TTAATAAAAAATAGAAATAG---------------------------------------------------------T-ATATA--------------------------------------------------AA
droPer2 scaffold_2310:1442-1589 - TTTCAA---AGAAATATATTTAAA----------------------------------------------------------------------------------------AAAAAAAAAT---------------------------------TGTCATATTAAAGAAATAAATAAAATTCATAAAAGACATTTG----A-A--T-----------------------------------------------------------------------------------------------------------------------------ATGTTCATA--------------------------------TTAAAG----------AAATAAATCA-----------------------------------------------------------------------------------------------------------------AATAAAAATAAATAA------AAACTAAAA---ATA--T-ATTTAA------------------------------------TTT--ATATGTAGAA
droWil2 scf2_1100000004762:456717-456928 - TCTTAG---TAAGAATCTCTT---------ACTGTTAATAACATT----AAAGAAATCTTAAAAATAT---CAAAGAAATTG-------------------------------------------TA---------------------------------------------------ATATATTTT--------------AAATGCTTTTTAGAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------AATTATAA----------AATAATGCACAAAAATAAAACATAACGCATTTGTTTTTATAATATTTTTTCCAAATAAGGCACTTAGCAACCTAGAAAAAAAATTTGATAAAAAATGCAAGTGC-----------------------------------------------------------------------------------------------------------AATGGAAAA
droVir3 scaffold_12936:113083-113318 - ATAAGA---AATATCTTATAAAAAG----------------------------------------------CAAAACGAAATTTAGA--------------------ATATGAT-AACAAAT---------------------------------TAAATGAA----------------ATAGA-ACAAGAGATAGGAAAATTA--TGTATACTAAA----------------------------------------GAACGACCCAGCACATACGTTAGAAAGTAGATATT--------------------------------------TGGGTCT------------------------------------TTATAA----------AGCAATATAAATATAAGA------------------------------------------------------------------TAGATAAAACATAAAA--------------------------------------------------------CTA--T-ATATAGAAAAAAACCCCAAGTATTGAATAAAAACAGGTTGATCAG--CCGCAAAGTA
droMoj3 scaffold_6498:1070169-1070338 - AAAATG---ATTATAAAAA-------------------------------------------------------------------------------------TAGAAATAAAAAAAAAAC---------------------------------TAAACAAAACAAAATTTAAGAAAAACAAGT---------------------------------TA-----GAACGTTGCAGTC--GGGCGATACCGACTGCGGAATACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCACATCCCATCAGC---AATTTAGTAGTTAAG-T-TT---CGCTTTAAT--------------ACTGTAGAAAATTCAGTTTT--------------TC
droGri2 scaffold_15126:3598815-3598888 + CAACAG---GCGCTGTCGTCGGCCAATGCCGCTGTCGATGCAGCC----AAGGATGTCAAGTAAGTGG---CACATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAACAA---ACGCTCTCGTCAAGA---GTCGCTGTGGATGCCATG----AAAGATGTAAAGTGAGTAC---CAAAATGATTTTCAGA----------------GGGGTTGTGTAAAAAAATT---------------------------------TAAATGAATAGAGAAATAAGAAAAATCAATTA--------------TTA--TTTATTCAAAACAT-----GAG------------------------------------------------------AGTCGAGATC--------------------------------------TCAGACTT---------------------------------ACTTAGAA----------AGGCATATCAATAAAAAT------------------------------------------------------------------TTGATAAAAAATAAAA--------------------------------------------------------ATA--T-TTTGAAA--------------AATGTAGGAGAACCAGTTTTTCTG--CCCTGTGGTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................TT---------------------------------ACTTAGAA----------AGGCATATCAATAAAAAT------------------------------------------------------------------T.......................................................................................................................................2912.00200000000200000000
..................................................AAGATGTAAAGTGAGTAC---CAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
..................................TGGATGCCATG----AAAGATGTAAAGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
............................................................................................................................................................................................................................................................................................TCGAGATC--------------------------------------TCAGACTT---------------------------------ACTT..........................................................................................................................................................................................................................................2011.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................TCAGACTT---------------------------------ACTTAGAA----------AGG.........................................................................................................................................................................................................................1911.00100000000001000000
................................................................................................................................................................................................................TATTCAAAACAT-----GAG------------------------------------------------------AGTCGAGATC--------------------------------------.......................................................................................................................................................................................................................................................................................2511.00100000001000000000
...................................................AGATGTAAAGTGAGTAC---CAAAATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...............TCGTCAAGA---GTCGCTGTGGATGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
............CTCTCGTCAAGA---GTCGCTGTGGATGCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
.......................................................................................................GGGGTTGTGTAAAAAAATT---------------------------------TAAATGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
....................AAGA---GTCGCTGTGGATGCCATG----AAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
....................AAGA---GTCGCTGTGGATGCCATG----AAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.....................AGA---GTCGCTGTGGATGCCATG----AAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..................................................................................................................................................................................................................................................................................................TC--------------------------------------TCAGACTT---------------------------------ACTTAGAA----------AGGCATA.....................................................................................................................................................................................................................2511.00100000000000010000
droSec2
CAACAA---ACGCTCTCGTCAAGA---GTCGCTATGGATGCCATG----AAGGATGTAAAGTGAGTAC---CAAAATGATTTTCAGAGGAGGGTTGCATCAAAGGGGTTGTGTA-AAAAATT---------------------------------TAAATGAATAGAGAAATAAGAAAAATCAATAA--------------TTA--TTTATTCAAAACAT-----GAG------------------------------------------------------AGTCGAGATC--------------------------------------TCAGACTT---------------------------------ACTTAGAA----------AGGCATATCAATAAAAAT------------------------------------------------------------------TTGATAAAA---------------------------------------------------------AAA---ATT--T-TTTGAAA--------------AATGTAGGAGAACCAGTTTTTCTG--CCCTGTGGTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AAATTG---ACAAGA---------------------------------------------------------------------------------------------------------------------------------------------------CTAATAAAATTATAAAAAATATTTA--------------AAATTTTTTTTAAAAATGT-----GGGCGTGACAGTTTCGGGCGGTTT--------------------------T-------A------TAAAAAAAATTTTT-------------------------------------TGCAAATCGATAAAAATTTACAATAC---T---------------------------------------------------------------------------------------------------------------------------------------------AATAAAAATATGAAA------AAAGT---ATCAGCA---------------------------------------CATTTATCTG--AAGTATGGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................TGT-----GGGCGTGACAGTTTCGGG..............................................................................................................................................................................................................................................................................................................................................................................2127.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000000000000000000000000210000000000000001211000000000000000000000001110000000
...........................................................................................................................................................................................................................T-----GGGCGTGACAGTTTCGGGCG............................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................AAATGT-----GGGCGTGACAGTTTCGGGCG............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTTTAAAAATGT-----GGGCGTGACAGTT...................................................................................................................................................................................................................................................................................................................................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TAAAAATGT-----GGGCGTGACAGTTTCGGG..............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GTTTCGGGCGGTTT--------------------------T-------A------TAAA...........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TGT-----GGGCGTGACAGTTTCGGGCG............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GT-----GGGCGTGACAGTTTCGGGC.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT---ATCAGCA---------------------------------------CATTTATCTG--AAGTA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................ATAC---T---------------------------------------------------------------------------------------------------------------------------------------------AATAAAAATATGAAA------AAAGT---....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAA------AAAGT---ATCAGCA---------------------------------------CATTTA................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TGT-----GGGCGTGACAGTTTCGGGC.............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTATCTG--AAGTATGGGC2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TACAATAC---T---------------------------------------------------------------------------------------------------------------------------------------------AATAAAAATATGAAA------............................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTTTAAAAATGT-----GGGCGTGACAGT....................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................T-----GGGCGTGACAGTTTCGGG..............................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................AAATTTTTTTTAAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................TTTTTTAAAAATGT-----GGGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................2190.2220000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTTTTTTAAAAATGT-----GGGCGT..........................................................................................................................................................................................................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TTT-------------------------------------TGCAAATCGATAAAAATTTACAA.....................................................................................................................................................................................................................................................2680.1310000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTTTTTAAAAATGT-----GGGCGTGT........................................................................................................................................................................................................................................................................................................................................................................................22140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTTTAAAAATGT-----GGGCG...........................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAAAAA---ATGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATCA--------------AAATATTTTTCAAAAGTGT-----GGATGTGTCAGTTTTGGGTGGCTT--------------------------GTGGGCGTG------GCAAAACCTATTTT-------------------------------------GGCATATTGTTAGAAGTTGACAAGATATTTAATTAAAA----------AGTGATAGAAACAAACAC------------------------------------------------------------------AAGATACAAAACAAAAA-------------------------------------------------------CTT--T-TCTCAAA--------------AGTATATGCCTGATAGTTTTGGGTGTTAGAGTGGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................TTGGGTGGCTT--------------------------GTGGGCGTG------GCA............................................................................................................................................................................................................................................................................................................................2326.501301000120
...............................................................................................................................................................................................................................................TGGGTGGCTT--------------------------GTGGGCGTG------GCA............................................................................................................................................................................................................................................................................................................................2221.0020000020
droYak3
CAAGAGAGAACGCTATAGTCGAG-----TCCCCGT-TACTCAGCTAGAGGAAGTTCGAAGGAGAGT---------------TTTCCACACTGACAGTTTTTGGCGGTTTGTCGATAGAAATT---------------------------------TACAAGACTAATACAAAAATGAAAAAATATCA--------------AAACATTTTTCAAAAGTGT-----GGGCGTGGCAGCTTTGGGCGGTTT--------------------------GTGGGCATG------GCAAAAAGTTTTTT-------------------------------------GGCAGATCGATAGAAATTTATAAGAC---T---------------------------------------------------------------------------------------------------------------------------------------------AATACAAAAATGAAA------AAA-T---ATCAAAATATTTTTCAAA--------------ATTGTGGGTATGGCAGTTTTGGGCG-ATTTGTGGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................GT-----GGGCGTGGCAGCTTTGGGC.............................................................................................................................................................................................................................................................................................................................................................................21200.10200200000000
.....................................................................................................................................................................................................................................................................................................................................................GGCAGATCGATAGAAATTTATAAGA...................................................................................................................................................................................................................................................25190.05101000000000
.....................................................................................CACACTGACAGTTTTTGGCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTTTTGGGCG-ATTTGTGGGC24200.05100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGGGCG-ATTTGTGGGC21200.05100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTTTTGGGCG-ATTTGTGGG.23200.05101000000000
droEug1
AGCCTA---AGCCTCTCGCCAAATGT---CGCGA----------------------------AAATAA---CGAAA-------------------------------------------AATCAGCTGATT--ACAGTGCAGCTGAAAAATATA-------------------------------TA--------------AATGGTGGTAAATAAATGC-----AATG------------AGC-------------AACAGATTTAGACTGGCCGAAAGTGAGT---------AAACAGTTCTAAAATATAAATATATATTTATATTACTTAT-------TTC--TTGCG------------------------AAAA----------AACTATATCTGTA----------------------------------------------------------CAGGTAGAAAAATTTAATTGAAATTCAAAATTCTTCAAAAAATGTTTACCTGCATTTTGTAAG---------------------------------------------------------------CAGTTTTTATG--ACTTG----TSizeHit CountTotal NormTotal
No Reads
droBia1
AAAAAT---TAAAA-------------------------------------------------------------------------------------------------------------------------------------------------TAAAAATAAGAATTAATAAAATTAAATA--------------TTA--AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAA-------------------------------------------------------------------------------------------------------------AATTTTTAAAATAATAATAATGCAAATAATAATAAT---AGTA--ATA-ATGAAA------------------------------------------CTGATTATTTAT--TCCAATTGTASizeHit CountTotal NormTotal
No Reads
droTak1
CCAAAA---AAATAG--------------------------------------------------------------------------------------------------------------TAGGTTTTAAAGAGTTTTTGAAAAATAATTTAAGTGTATAGAGATTTG----------------------------------------------------------------------GTATAGCGGTATACAAATATTT------------------------ATTTTAAACA------------------------------CCTTT-------TTCAAATGTGGAAAAATTACAAAT---TTTAATTTTAAAATGTTGGAAAAGCTTATTAG-------------------------------------------------------------------------------------------------------------ACAAAA-------CT---TCTA--TTA-AAAACA------------------------------------------TTAGTTATGAAA--ATCTATGAAASizeHit CountTotal NormTotal
No Reads
droEle1
CAACAA---ACTCTCTCGTCGACAAA---CGCTGTTGATGCCGCC----AAGGAAGTAAAGTGAGTAAAACCAAA--GATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droRho1
GGTTGT---TAAG------------------------------------------------------------------------------------------------------AATAATT---------------------------------CTTATGAATAATAAGTTTCAAAAAATTAATTA--------------TTA--TTTTTTTAAGATACGGAATGAA------T------------------------------------------------------GTTTCATTCA------------------------------CTTAAATTAATT--------------------------------TTGTAA----------ATTTAATTCG-----------------------------------------------------------------------------------------------------------------AATTTTAATTAATTA------GTAGTAAAA---ATG--T-TTAATAA--------------AA------------------------------TTTASizeHit CountTotal NormTotal
No Reads
droFic1
CAGCAA---ACTCTCTCATCGGCGAA---CGCCGTGGATGCCGCC----AAGGAAGTGAAGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAACAG---ACGCTGTCCTCTGCAAATGCAGCTGTGGATGCGGCC----AAGGAAGTCAAGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CAACAA---ACCCTTTCGTCGGCCAACGCAGCTGTAGATGCAGCC----AAGGAAGTCAAGTTAGTAA---AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CAACAA---ACACTATCGTCGGCCAATGCAGCTGTAGATGCAGCC----AAGGAAGTCAAGTTAGTAA---AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGASizeHit CountTotal NormTotal
No Reads
dp5
AAAAAA---ATAATAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAACA--------------TTA--ACAT------------------------------------------------------------------------------------------------------------------------TAACATTAACA--------------------------------TTAAAA----------ACACAATAAAATAAGAGC------------------------------------------------------------------TTAATAAAAAATAGAAATAG---------------------------------------------------------T-ATATA--------------------------------------------------AASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTTCAA---AGAAATATATTTAAA----------------------------------------------------------------------------------------AAAAAAAAAT---------------------------------TGTCATATTAAAGAAATAAATAAAATTCATAAAAGACATTTG----A-A--T-----------------------------------------------------------------------------------------------------------------------------ATGTTCATA--------------------------------TTAAAG----------AAATAAATCA-----------------------------------------------------------------------------------------------------------------AATAAAAATAAATAA------AAACTAAAA---ATA--T-ATTTAA------------------------------------TTT--ATATGTAGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCTTAG---TAAGAATCTCTT---------ACTGTTAATAACATT----AAAGAAATCTTAAAAATAT---CAAAGAAATTG-------------------------------------------TA---------------------------------------------------ATATATTTT--------------AAATGCTTTTTAGAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------AATTATAA----------AATAATGCACAAAAATAAAACATAACGCATTTGTTTTTATAATATTTTTTCCAAATAAGGCACTTAGCAACCTAGAAAAAAAATTTGATAAAAAATGCAAGTGC-----------------------------------------------------------------------------------------------------------AATGGAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATAAGA---AATATCTTATAAAAAG----------------------------------------------CAAAACGAAATTTAGA--------------------ATATGAT-AACAAAT---------------------------------TAAATGAA----------------ATAGA-ACAAGAGATAGGAAAATTA--TGTATACTAAA----------------------------------------GAACGACCCAGCACATACGTTAGAAAGTAGATATT--------------------------------------TGGGTCT------------------------------------TTATAA----------AGCAATATAAATATAAGA------------------------------------------------------------------TAGATAAAACATAAAA--------------------------------------------------------CTA--T-ATATAGAAAAAAACCCCAAGTATTGAATAAAAACAGGTTGATCAG--CCGCAAAGTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................ACTAAA----------------------------------------GAACGACCCAGCACATACGT............................................................................................................................................................................................................................................................................................................................................2612.002000000002000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................A----------AGCAATATAAATATAAGA------------------------------------------------------------------TAGA....................................................................................................................................2311.001000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................A--TGTATACTAAA----------------------------------------GAACGACCCAGCACA.................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................A--TGTATACTAAA----------------------------------------GAACGACCC.......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TAA----------AGCAATATAAATATAAGA------------------------------------------------------------------TAG.....................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................ACGTTAGAAAGTAGATATT--------------------------------------TGGGTC.................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTATTGAATAAAAACAGGTTGA................2540.502000000000000000000000000000000000000200000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGA------------------------------------------------------------------TAGATAAAACATAAAA--------------------------------------------------------CT..............................................................2420.501000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................AAAGTAGATATT--------------------------------------TGGGTCT------------------------------------............................................................................................................................................................................................................................................1930.331000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AAAGTAGATATT--------------------------------------TGGGTCT------------------------------------TTATAA----------AG..........................................................................................................................................................................................................................2730.331000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATTGAATAAAAACAGGTTG.................2340.251000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATTGAATAAAAACAGG....................2040.251001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATTGAATAAAAACAGGTTGATCA.............2740.251001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTATTGAATAAAAACAGGTTGATC..............2740.251000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTATTGAATAAAAACAGGTTG.................2440.251000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATTGAATAAAAACAGGTTGATC..............2640.251000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTATTGAATAAAAACAGGTTGATCT.............2840.251000000000000000000000000000000000000001000000000000000000000000
droMoj3
AAAATG---ATTATAAAAA-------------------------------------------------------------------------------------TAGAAATAAAAAAAAAAC---------------------------------TAAACAAAACAAAATTTAAGAAAAACAAGT---------------------------------TA-----GAACGTTGCAGTC--GGGCGATACCGACTGCGGAATACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCACATCCCATCAGC---AATTTAGTAGTTAAG-T-TT---CGCTTTAAT--------------ACTGTAGAAAATTCAGTTTT--------------TCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................GCGATACCGACTGCGGAATACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT....................................................................................................2530.672200000
..................................................................................................................................................................................................................................................GCGATACCGACTGCGGAATACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.....................................................................................................2430.672200000
..................................................................................................................................................................................................................................................GCGATACCGACTGCGGAATACT.........................................................................................................................................................................................................................................................................................................................................................2230.331100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCAGC---AATTTAGTAGTTAAG-..................................................................26190.214300001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCATCAGC---AATTTAGTAGTTAAG-..................................................................25190.112200000
..............................................................................................................................................................................................................................................................GCGGAATACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCACATCC............................................................................................21200.102200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCAGC---AATTTAGTAGTTA.....................................................................24200.102000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCAGC---AATTTAGTAGTT......................................................................23200.102100001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCCATCAGC---AATTTAGTAGTTAAG-..................................................................27180.061000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCAGC---AATTTAGTAGTTAA....................................................................25190.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCATCAGC---AATTTAGTAGTTAA....................................................................24190.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCAGC---AATTTAGTAGTTG.....................................................................24200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACATCCCATCAGC---AATTTAGTAG........................................................................25200.051100000
.................................................................................................................................................................................................................................................................GAATACTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCACATCCCATC........................................................................................22200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCAGC---AATTTAGTAGTTAAG-T-C...............................................................28200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCAGC---AATTTAGT..........................................................................19200.051000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT--------------ACTGTAGAAAATTCAGT...................21200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACATCCCATCAGC---AATTTAGTAG........................................................................26200.051000010
droGri2
CAACAG---GCGCTGTCGTCGGCCAATGCCGCTGTCGATGCAGCC----AAGGATGTCAAGTAAGTGG---CACATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:38 PM