ID:

dsi_7768

 Coordinate:

3l:16247735-16247884 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.9 -28.9 -28.9

Flybase annnotation

CDS [3l_16247885_16248066_-]; exon [3l_16247885_16248121_-]; intron [3l_16240036_16247884_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACATGCTGGTCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGGTGAGTCTGCCACACTGACATGTGTTCTTTGGTGCTTTAGATAGACAATTCATTGAAATTATAGTTGGGTTAAGAACTTGCGCCCTTTGGCCTTGAAAAATTATTAGCTGGCTGCCGGGGAGCGGCAATAATTACACCCACAAGTGCACACGCCCCTTGCAGGCGGTAGAAAGAACTTACTATTTATCGAAACCAATCCC
**************************************************((..(((((...(((((((....)))....))))...)))))..))...................((((((((....((((((((((.((((.................))))...)))).)).))))...))).)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................TAAGAACTTGCGCCCTTTGGC............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................ATGCAAAATCGGCCTAGA....................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0
............................ACTTTATGCAAAATCGGCCT.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................AGTTGGGTTCAGAAC........................................................................................................................... 15 1 14 0.21 3 0 0 0 1 1 0 1
.......................................................................GTATTCTTTGGTGATTTAGCT.............................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0
.....................................................................................................................................CCTCGGACCTTGAAAAATTAT................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 1 0
................................................................................................................AGTTGGGTTTAGAAC........................................................................................................................... 15 1 8 0.13 1 0 0 0 1 0 0 0
.........................................TCGGCGTAGGGGAGTCGGCC............................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0 0

Anti-sense strand reads

ATGTACGACCAGTAGAAGCCACCAGTCGTGAAATACGTTTTAGCCGGATCCACTCAGACGGTGTGACTGTACACAAGAAACCACGAAATCTATCTGTTAAGTAACTTTAATATCAACCCAATTCTTGAACGCGGGAAACCGGAACTTTTTAATAATCGACCGACGGCCCCTCGCCGTTATTAATGTGGGTGTTCACGTGTGCGGGGAACGTCCGCCATCTTTCTTGAATGATAAATAGCTTTGGTTAGGG
**************************************************((..(((((...(((((((....)))....))))...)))))..))...................((((((((....((((((((((.((((.................))))...)))).)).))))...))).)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
............................TGAAATACGTTTTAG............................................................................................................................................................................................................... 15 0 6 0.50 3 3 0
.....................................................TCAGACGTTGTGACTG..................................................................................................................................................................................... 16 1 6 0.17 1 1 0
............................TGAAATACGTTTTAGACC............................................................................................................................................................................................................ 18 2 14 0.07 1 1 0
.......................................TTAGCCCTATCCACTCA.................................................................................................................................................................................................. 17 2 15 0.07 1 0 1
..........................................................................................................................................................................................................GGGGGACGTCCGCCA................................. 15 1 17 0.06 1 1 0

Generated: 04/24/2015 at 03:21 AM