dsi_7761

AACGCCGCCAAAACACACACAGCGAAAATAAATTGTTATTATCTGAAAAGGCAAGTGCCACCACCCCTTCCCCCTTCTGAGTGTGTTTGTGTGAGCAGCGGCTGCTATATATCTGAGTGTGTGTGTGTGCGCGAGTGGTTTTGTGTGCGAAAATGCATTAATTCACCAATACGAAGGCAGATGCAGCAACAACATCAGCAACAACATCAGCGAGAGGAATATTGCAAGCG ***********************************************************...............((.(((((((.......(((((...)))))))))).)).))........((((((((((....))))))))))......*************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	M023 head	M024 male body	M053 female body	O001 Testis	O002 Head	GSM343915 embryo
.........................................................................................................................................GTTTTGTGTGCGAAAATG...........................................................................	18	0	1	3.00	3	1	0	0	0	0	1	1	0	0	0	0
....................................................................................................................................................................................ATGCAGCAACAACATCAGCAAC............................	22	0	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0
.............................................................CACCCCTTCCCCCTTCTGAG.....................................................................................................................................................	20	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................CCCCTTCTGAGTGTGTTTGTGTGAGCAGC...................................................................................................................................	29	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................CACCAATACGAAGGCAGATGC..............................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................TCTGAGTGTGTTTGTGTGAGCA.....................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAACAACATCAGCAACAACATCA.....................	23	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
............................................................................................................................GTGTGCGCGAGTGGTTTTGT......................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
................................................................................GTGTGTTTGTGTGAGCAGCGG.................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................GCGCGAGTGGTTTAG.......................................................................................	15	1	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................GCGCAAGTGGTTTAGTG.....................................................................................	17	2	13	0.15	2	0	0	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................GAAGCCTGATGCAGCAACG.......................................	19	3	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................AGCAGCGGCTGATATTT........................................................................................................................	17	2	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CAGCAACAACATCAGCA..............................	17	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0

TTGCGGCGGTTTTGTGTGTGTCGCTTTTATTTAACAATAATAGACTTTTCCGTTCACGGTGGTGGGGAAGGGGGAAGACTCACACAAACACACTCGTCGCCGACGATATATAGACTCACACACACACACGCGCTCACCAAAACACACGCTTTTACGTAATTAAGTGGTTATGCTTCCGTCTACGTCGTTGTTGTAGTCGTTGTTGTAGTCGCTCTCCTTATAACGTTCGC *************************************************************************...............((.(((((((.......(((((...)))))))))).)).))........((((((((((....))))))))))......***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	M024 male body	O001 Testis	M025 embryo
...CGGCGGTTTTGTGTGTGTCGC..............................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
.......................................................................GGGAAGACTCACACAAACA............................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................GGTTATGCTTCCGTCTAC...............................................	18	0	1	1.00	1	1	0	0	0	0
.................................................CCGTTCACGGTGGTGGGGAAGG...............................................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................GTAGTCGTTGTTGTATTCGCT.................	21	1	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................GTCGTTGTTGTAGTCGTT.............................	18	0	8	0.13	1	0	1	0	0	0
.....GCGGTTTCGTGTATGTCG...............................................................................................................................................................................................................	18	2	9	0.11	1	0	1	0	0	0
...............................................................................................................................................................................CCGTCTTCGTCGTTGTTGT....................................	19	1	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:144963-145192 +	dsi_7761	A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCTGAA--------------------------AA---------------GGCAA--GTGCCA-CCA---------------CCCCT------------------------T-------C------------CCCCTTC---------------TGAGTGTG--TTTGTGTGA--------------GCAGCGGCTGCTATATATCTGAGTGTGTGTGTGTGCGCG----------AG----TGGTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------GGCAGATGCAGCAACAACATCAG---CAAC------AACATCAGCGA---GAGGAA----------TATTGCA-------AGC-G
droSec2	scaffold_14:157898-158125 +		A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCAGAA--------------------------AA---------------GGCAA--GTGCCA-CCA---------------CCCCT------------------------T-------C------------CCCCTTC---------------TGAGTGTG--TTTGTGTGA--------------GCAGCGGCTGCTATATATCTG--AGTGTGTGTGTGCGCG----------AG----TGGTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------GGCAGATGCAGCAACAACATCAG---CAAC------AACATCAGCGA---GAGGAA----------TATTGCA-------AGC-G
dm3	chr2L:159137-159361 +		A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCTGAA--------------------------AA---------------GGCAA--GTGCCA-CCA---------------CCCCT------------------------T-------C------------CCCATTC---------------TGAGTGTG--TTTGTGTGA--------------GCAGCGGCTGCTATATATCTG--AGTGTGTGTGTGCGCG----------AG----TGGTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------AGCAGATGCAGCAACAACATCAG------C------ATCATCAGCGA---GAGGAA----------TATTGCA-------AGC-G
droEre2	scaffold_4929:200349-200577 +		A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCTGAA------------------------A-AA---------------GGCAA--GTGCCA-CCA---------------CCCCT------------------------T--------------------CCCCTTC---------------TTAGTGTG----TGTGTGA--------------GCAGCGGCTGCTATATATCTG--AGTGTGTGTGTGCGCG----------AG----TGTTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------GGCAGATGCAGCAACAACACCAGCAACAAC------AACATCAGCGA---GAGGAA----------TATCGTA-------AGC-G
droYak3	2L:148545-148774 +		A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCTGAA------------------------A-AA---------------GGCAA--GTGTCT-CCA---------------CCCCT------------------------T-------C------------CCCCTTC---------------TTAGTGTG----TGTGTGA--------------GCAGCGGCTGCTATATATCTG--AGTGTGTGTGTGCGCG----------AG----TGTTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------GGCAGATGCAGCAACAACATCAGCAACAAC------AACATCGGCGA---GAGGAA----------TATCGTA-------AGC-G
droEug1	scf7180000409154:147599-147817 +		A-ACGCCGCCAAAACACACACAT----CGAA--A--------A--AAA------ATTATTG---TTATCTGAA------------------------A-AA---------------GGCAA--GTGCCCACCT---------------CCCCT------------------------T-------T------------CCCATTC---------------TCAGAGTG------TGCCA--------------GCATCGGCAGC----TATCTT--TGTGTGTGCGTGCGCGAGTGTGTGTGTG----TGTGTGTGTGTGCT-AAAATGCATTAATTACACCAATACCAA------GGCAGATGCAACAAC------------------------CACAGCTA---GAGAAGGAAAAGTT----------------AAC-A
droBia1	scf7180000301547:115225-115434 -		A-ACGCCGCCAAAACACACACAG----CGAA--A--------A---AA----TTATTGTTA---TTATCTGAA-----------------------------------------------A--GTGCC--CCA---------------CCCCT------------------------C----------------------CCCTC---------------TCAGTGTG----TGTGCGA--------------GCATCGGCGG----ATACCT----GTGTGTGAGTGCGCG----------AG----TGTGTTTGCGTGCG-AAAGTGCATTAATTACACCGATACCAATACCAAGGCAGAAGCAGCAGCA---------GCAGC------AACATCAGCGA---GAGAAA---GAGTT----------------ACC-A
droTak1	scf7180000413017:398655-398837 -		A-ACGCCGCCAAAACACACAGAG----CGAAGC--G----CAA--AAG----TTATTGTTA---TTGTCGGA-----------------------------------------------AA--GTGCC--CCG---------------CCCCT------------------------C-------C------------CC--------------------------------TGTGCGA--------------GCATCGGCG-----AAACCTG--TGTGTGTGAGTGCGCG----------AG----TGTG-TTGCGTGCG-AAACTGCATTAATTGCACCAATACCAA-------GCAGATGCAGCGACAACA------------------------ACGA---G---------AGTT----------------AAC-G
droEle1	scf7180000490216:76577-76809 +		A-ACGCCGCCAAAACACACACAA----CGAA--A--------A--AAA----TTATTGTTA---GTATCTGAA-----------------------AAAAA---------------AGCAA--GTGCCC-CCG---------------CCCCT------------------------TT------T------------CCCCATC---------------TCATTGTG----TGTGTGAGTG--TGCGTGCCATCATCGGCG------TAATTCTGTGTGTGTGCGTGCGCG----------AT----TGTATCTGTGTGCG-AAAGTGCATTAATTACACCAATACCAC------GGTAGATGCAGCAATAA------------C------AACAACAGCTA---GAGAAAGAAGAGTT----------------AAC-G
droRho1	scf7180000779252:168216-168445 +		A-ACGCCGCCAAAACACACACAA----CGAA--A--------A--AAA----TTATTGTTA---ATATCTGAA------------------------AGAA---------------ATTAA--GTGCCC-CCA---------------CCCCT------------------------T-------T------------TCCCATC---------------TCAGTGTG----TGTGTGGATGCGTGCGGGCCAGCATCGGC------ATAATTGTGTGTGTGTGCGCGCGTG----------AT----TGCATTTGTGTGCG-AAAAAGCATTAATTACACCAATACAAC------GGCAGATGCAGCAATAAC---------------------AACAGCGA---GAGAAAGAAGAGTT----------------AAC-G
droFic1	scf7180000453904:404720-404944 +		A-ACGCCGCCAAAACACACACAG----CAAA--A--------A--ATT------ATTGTTATTATTATCTGAA------------------------AAAA---------------GGAAA--GTGCCC-CCA---------------CCCCC------------------------T-------T------------CCCCTTC---------------TCAGTGTG--TGTAAGTGC--------------GAATCGGCG------TATCTCTGTGTGTGTTCGTGCGCG----------AG----TGAGCTTGTGTGCG-AAAATGCATTAATTACACCAACACCAA------GGCAGATGCAGCAACAACA---------AC------GACAACAGCGG---GAGAAAGAAGAGTT----------------AAC-A
droKik1	scf7180000302273:90616-90880 +		A-ACGCCGCCAAAACACACACAG----CAAAAG--A----AAA--AAT------ATTGTTATTATTATCTGTG--------A--------AATAAAAAGAA---------------GGCAA--GTTCCC-CTC---------------TTTCT----------------------CTCTCCCTCGCT----TCAATACCCCCCTC---------------G-CGTCTG----TGTGTGAGCGCCTATGT----GCAGCGGT------CTATCTG--TGTGTATGTGTGTGCGGGCGCG----AG----TGCGTTTGTGTGTG-GAAATGCATTAATTACACCAATACCAA------GGCAGATGCAGCAGCAACGG---------CTACAACAA-------------------AATAGTTAATA---TAA---AAATAC-A
droAna3	scaffold_12943:4257500-4257742 -		A-ACGCCGCCAAAACACAC--AG----CAAAATA------A-----AA------AT---TC---TTATCTAAA------------------------A-AAAATAAATATAAATACGGCAA--GTGGCC-CCT---------------CCCGT------------------------CT------C------------CCCCTCCTCCA------TC---TAAGCGTGTGTGTGTGTGA--------------G-AGCG-TTGG--TGTATCT----GTGTATCTGTGCGCG----------AGTTTTTGTGAGTTTGTGTG-AAAATGCATTAATTACACCAACACCG---------CAATA---------ACAACAACAACAAC------AACGCCAACAA---AAGTAA----------TA---CAAATCAAATAC-A
droBip1	scf7180000395973:475886-476133 -		AAACGCCGCCAAAACACACACAA---GCAAA--AAAAATAA-----AA------ATTG------TTATCTAAACAA---AAAAAT-----------------ATAAATATAAATACGGCAAGAGTGGCC-CCT---------------CCCGT------------------------C-------T------------CCCCATC--TATC----TC---TGAGTGCG----CGTGTG------TGTGTGA--G-AGCG-TTGG----TGTAT--CTGTGCGC-----CGCG----------AGTT-ATGTGAGTTTGTGTG-AAAATGCATTAATTACACCAACACCGC------AATA------------ACAACAGCAACAAC------AACAGCAACCA---CAACAA----------GATTA-A-------AAT-A
droPer2	scaffold_5:708144-708363 +		A-ACGCCGCCAAAACACACACGA----CAAAGA--G----AAAAATAAATTAAAATTATTAGTGTTATGTACA------------------------AAAT---------------AAAAA--GTGCCC-CCT------------AAGCCCCC------------------------TG------CTGCTACCAACAGCCCCCTA---------------TCTATGTG----TATGTG------------------------------TATCT------GTGTGTGTTCGCG----------AGTGCTTGTGTGTGTG--TGAAAAATGCATTAATTACACCAATTCCAA------GGCGA-AAAAGCTACAACAAAA------AA------TACCACAGC----------------------------------------
droWil2	scf2_1100000004516:2247228-2247514 +		A--CGCCGCCAAAACACACACACAAAGCAAA--AAGTTTAA-----AA------ATTA---------TAAAAA--AGTTAATAATACCTCAACAAAAAAAA---------------GGCAA--GTACTT--TGCCCGTGCACCCCA--CTCCCCTCTATCGCTGCATCTCTATCTCTCT--------------------CCCTCCTACA--CTTATCATCTTGATGTG----TGAGTGC--------------GTG--TGCG-TTGTGTGTGT--GTGTGCGTGTGTATGTG----------AG----TGTGTGTTTATGTG-AAAATGCATTAATTGCAACAACA--------------------GCAACAACCACATCAACAAC------AACAACAACAG---GAGAAA----------T---GTAA-----ATACAA
droVir3	scaffold_12963:8978871-8978998 -		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG--TTTGTGTGA--------------GTACGTGCGTAAGTTTATGCATGTGTGTGCGAGTGGGCA----------AT----TGTGTTTATGTGCG-AAAACGCATTAATTACACAAATACAAA------TGCAAATGCAAATACAACAACA------------------------------------AAAGTA----------------AAT-A
droMoj3	scaffold_6500:2344673-2344814 +		G-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTG--TGTGCGTGT--------------GCGTATGTTGA----TGCAT--GTGTATGCGTGTAGGCG----------AT----TGTGTTTATTTGGG-AAAACGCATTAATTACACAAATACAAA------TGCAAATGCGAATGCGAGTG---------C------AAATACAAATA---CAACAACAAATGTA----------------AAT-A
droGri2	scaffold_15252:12810132-12810277 +		T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTA--TGCATGTGA--------------GCGAGTGCGTGTATGTGTAT--ATGTGTGCGTGTGGGCG----------AT----TGTGTTTATG--TG-AAAACGCATTAATTACACAAATACAAA------TGCAAATACAACAACAAATG---------T------AAATACAAATAAAATACAAATACAATC---------A-------AAC-A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCTGAA--------------------------AA---------------GGCAA--GTGCCA-CCA---------------CCCCT------------------------T-------C------------CCCCTTC---------------TGAGTGTG--TTTGTGTGA--------------GCAGCGGCTGCTATATATCTGAGTGTGTGTGTGTGCGCG----------AG----TGGTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------GGCAGATGCAGCAACAACATCAG---CAAC------AACATCAGCGA---GAGGAA----------TATTGCA-------AGC-G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................GTTTTGTGTGCG-AAAATG................................................................................................................	18	1	3.00	3	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGCAACAACATCAG---CAAC------.................................................	22	1	2.00	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CA---------------CCCCT------------------------T-------C------------CCCCTTC---------------TGAG.........................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
......................................................................................................................................................................................................CCCCTTC---------------TGAGTGTG--TTTGTGTGA--------------GCAGC.......................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CACCAATACGAA------GGCAGATGC............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TC---------------TGAGTGTG--TTTGTGTGA--------------GCA.........................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CAACAACATCAG---CAAC------AACATCA..........................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GTGTGCGCG----------AG----TGGTTTTGT............................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................GTGTG--TTTGTGTGA--------------GCAGCGG.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACATCAG---CA.........................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCAGAA--------------------------AA---------------GGCAA--GTGCCA-CCA---------------CCCCT------------------------T-------C------------CCCCTTC---------------TGAGTGTG--TTTGTGTGA--------------GCAGCGGCTGCTATATATCTG--AGTGTGTGTGTGCGCG----------AG----TGGTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------GGCAGATGCAGCAACAACATCAG---CAAC------AACATCAGCGA---GAGGAA----------TATTGCA-------AGC-G	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..ACGCCGCCAAAACACACACAG----CG............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................GAGTGTG--TTTGTGTGA--------------GCAGCGGCTGCT................................................................................................................................................................................	28	1	1.00	1	0	0	0	1
.............................................................................................................................................................................................................................................................................................GTGCGCG----------AG----TGGTTTTGT............................................................................................................................	18	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGCAACAACATCAG---CAA........................................................	21	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCGA---GAGGAA----------TATTGCA-------AG...	20	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................................AG----TGGTTTTGTGTGCG-AA....................................................................................................................	18	1	1.00	1	0	0	0	1
...........................................................................................................................................................................................................................................................................................GTGTGCGCG----------AG----TGGTTTTG.............................................................................................................................	19	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................TGTGTGA--------------GCAGCGGCTGCTATT.............................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................GTGTGCGCG----------AG----TGGTTTTGTGTGT........................................................................................................................	24	1	1.00	1	0	0	1	0
...............................................A------ATTGTTA---TTATCAGAA--------------------------AA---------------GGC..................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................G----------AG----TGGTTTTGTGTGCG-AAAATGCA..............................................................................................................	25	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................G--TTTGTGTGA--------------GCAGCGGCTG..................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................GTGTG--TTTGTGTGA--------------GCAGC.......................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................TTGTGTGA--------------GCAGCGGCTGCT................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................TGTGTGTGTGCGCG----------AG----TGG..................................................................................................................................	19	1	1.00	1	0	1	0	0

dm3

A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCTGAA--------------------------AA---------------GGCAA--GTGCCA-CCA---------------CCCCT------------------------T-------C------------CCCATTC---------------TGAGTGTG--TTTGTGTGA--------------GCAGCGGCTGCTATATATCTG--AGTGTGTGTGTGCGCG----------AG----TGGTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------AGCAGATGCAGCAACAACATCAG------C------ATCATCAGCGA---GAGGAA----------TATTGCA-------AGC-G	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................TGCGCG----------AG----TGGTTTTGTGTGC........................................................................................................................	21	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................ATTC---------------TGAGTGTG--TTTGTGTGA--------------............................................................................................................................................................................................	21	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................ATCAG------C------ATCATCAGCGA---GAGG...............................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0
......................................................................................................................................................................................................................................TTTGTGTGA--------------GCAGCGGCTGCT................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TATATCTG--AGTGTGTGTGTGC........................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................GTGTG--TTTGTGTGA--------------GCAGCGG.....................................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GCTATATATCTG--AGTGTGTGT............................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................TGGTTTTGTGTGCG-AAAATGC...............................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................TATATCTG--AGTGTGTGTGTGCG.......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCGA---GAGGAA----------TATTG..............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGA---GAGGAA----------TATTGCA-------AGC-.	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................ATCTG--AGTGTGTGTGTGCGC......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGCGA---GAGGAA----------TATTGCA-------AGC-.	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TGTGTGTGCGCG----------AG----TGGTTTT..............................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTGTGTGTGCGCG----------AG----TGGT.................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................ACATCAG------C------ATCATCAGCGA---GA.................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAGCGA---GAGGAA----------TATTG..............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TTGTGTGA--------------GCAGCGGCTGCTAT..............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TCTGAA--------------------------AA---------------GGCAA--GTGCCA-CCA---------------CCCC.................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GCGA---GAGGAA----------TATTGCA-------AGC-G	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCTGAA------------------------A-AA---------------GGCAA--GTGCCA-CCA---------------CCCCT------------------------T--------------------CCCCTTC---------------TTAGTGTG----TGTGTGA--------------GCAGCGGCTGCTATATATCTG--AGTGTGTGTGTGCGCG----------AG----TGTTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------GGCAGATGCAGCAACAACACCAGCAACAAC------AACATCAGCGA---GAGGAA----------TATCGTA-------AGC-G	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................ATACGAA------GGCAGATGCAGCA........................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................GTGCGCG----------AG----TGTTTTTGTGTGCG-AAAA..................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGA---GAGGAA----------TATCGT.............	20	1	1.00	1	0	0	0	0	1	0	0
..........AAAACACACACAG----CGAA--A--------A--T...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTGTGCGCG----------AG----TGTTTTTGT............................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................CGAA------GGCAGATGCAGCAACAACACCAGC.............................................................	28	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACAAC------AACATCAGCGA---GA.................................	26	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................T-CACCAATACGAA------GGCAGA...............................................................................	19	1	1.00	1	0	0	1	0	0	0	0
..............CACACACAG----CGAA--A--------A--TAA------ATTG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................GTGA--------------GCAGCGGCTGCTATATATCTG--AGT..................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................GTGTGTGTGCGCG----------AG----TGT..................................................................................................................................	18	7	0.14	1	0	0	0	0	0	1	0

droYak3

A-ACGCCGCCAAAACACACACAG----CGAA--A--------A--TAA------ATTGTTA---TTATCTGAA------------------------A-AA---------------GGCAA--GTGTCT-CCA---------------CCCCT------------------------T-------C------------CCCCTTC---------------TTAGTGTG----TGTGTGA--------------GCAGCGGCTGCTATATATCTG--AGTGTGTGTGTGCGCG----------AG----TGTTTTTGTGTGCG-AAAATGCATTAATT-CACCAATACGAA------GGCAGATGCAGCAACAACATCAGCAACAAC------AACATCGGCGA---GAGGAA----------TATCGTA-------AGC-G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................TCAGCAACAAC------AACATCGGCGA---...................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GCAACAAC------AACATCGGCGA---GAG................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AACAAC------AACATCGGCGA---GAGG...............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GTGTG----TGTGTGA--------------GCAGCGGCT...................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................G----TGTGTGA--------------GCAGCGGCTGCT................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GCTATATATCTG--AGTGTGTGTGTGC........................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................G--AGTGTGTGTGTGCGCG----------A..........................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ATATATCTG--AGTGTGTGTGTGC........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AAC------AACATCGGCGA---GAGGA..............................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CAATACGAA------GGCAGATGCAGCAA.......................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AACAAC------AACATCGGCGA---GA.................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AACAAC------AACATCGGCGA---GAGGAA----------TATC...............	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................TA---TTATCTGAA------------------------A-AA---------------GGCAA--GT............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................TTC---------------TTAGTGTG----TGTGTGA--------------GC..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ATATATCTG--AGTGTGTGTGT..........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................GTGTGCGCG----------AG----TGTTTTTGTGTGC........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................GTGTG----TGTGTGA--------------GCAGCGGC....................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

A-ACGCCGCCAAAACACACACAT----CGAA--A--------A--AAA------ATTATTG---TTATCTGAA------------------------A-AA---------------GGCAA--GTGCCCACCT---------------CCCCT------------------------T-------T------------CCCATTC---------------TCAGAGTG------TGCCA--------------GCATCGGCAGC----TATCTT--TGTGTGTGCGTGCGCGAGTGTGTGTGTG----TGTGTGTGTGTGCT-AAAATGCATTAATTACACCAATACCAA------GGCAGATGCAACAAC------------------------CACAGCTA---GAGAAGGAAAAGTT----------------AAC-A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A-ACGCCGCCAAAACACACACAG----CGAA--A--------A---AA----TTATTGTTA---TTATCTGAA-----------------------------------------------A--GTGCC--CCA---------------CCCCT------------------------C----------------------CCCTC---------------TCAGTGTG----TGTGCGA--------------GCATCGGCGG----ATACCT----GTGTGTGAGTGCGCG----------AG----TGTGTTTGCGTGCG-AAAGTGCATTAATTACACCGATACCAATACCAAGGCAGAAGCAGCAGCA---------GCAGC------AACATCAGCGA---GAGAAA---GAGTT----------------ACC-A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A-ACGCCGCCAAAACACACAGAG----CGAAGC--G----CAA--AAG----TTATTGTTA---TTGTCGGA-----------------------------------------------AA--GTGCC--CCG---------------CCCCT------------------------C-------C------------CC--------------------------------TGTGCGA--------------GCATCGGCG-----AAACCTG--TGTGTGTGAGTGCGCG----------AG----TGTG-TTGCGTGCG-AAACTGCATTAATTGCACCAATACCAA-------GCAGATGCAGCGACAACA------------------------ACGA---G---------AGTT----------------AAC-G	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A-ACGCCGCCAAAACACACACAA----CGAA--A--------A--AAA----TTATTGTTA---GTATCTGAA-----------------------AAAAA---------------AGCAA--GTGCCC-CCG---------------CCCCT------------------------TT------T------------CCCCATC---------------TCATTGTG----TGTGTGAGTG--TGCGTGCCATCATCGGCG------TAATTCTGTGTGTGTGCGTGCGCG----------AT----TGTATCTGTGTGCG-AAAGTGCATTAATTACACCAATACCAC------GGTAGATGCAGCAATAA------------C------AACAACAGCTA---GAGAAAGAAGAGTT----------------AAC-G	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A-ACGCCGCCAAAACACACACAA----CGAA--A--------A--AAA----TTATTGTTA---ATATCTGAA------------------------AGAA---------------ATTAA--GTGCCC-CCA---------------CCCCT------------------------T-------T------------TCCCATC---------------TCAGTGTG----TGTGTGGATGCGTGCGGGCCAGCATCGGC------ATAATTGTGTGTGTGTGCGCGCGTG----------AT----TGCATTTGTGTGCG-AAAAAGCATTAATTACACCAATACAAC------GGCAGATGCAGCAATAAC---------------------AACAGCGA---GAGAAAGAAGAGTT----------------AAC-G	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A-ACGCCGCCAAAACACACACAG----CAAA--A--------A--ATT------ATTGTTATTATTATCTGAA------------------------AAAA---------------GGAAA--GTGCCC-CCA---------------CCCCC------------------------T-------T------------CCCCTTC---------------TCAGTGTG--TGTAAGTGC--------------GAATCGGCG------TATCTCTGTGTGTGTTCGTGCGCG----------AG----TGAGCTTGTGTGCG-AAAATGCATTAATTACACCAACACCAA------GGCAGATGCAGCAACAACA---------AC------GACAACAGCGG---GAGAAAGAAGAGTT----------------AAC-A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A-ACGCCGCCAAAACACACACAG----CAAAAG--A----AAA--AAT------ATTGTTATTATTATCTGTG--------A--------AATAAAAAGAA---------------GGCAA--GTTCCC-CTC---------------TTTCT----------------------CTCTCCCTCGCT----TCAATACCCCCCTC---------------G-CGTCTG----TGTGTGAGCGCCTATGT----GCAGCGGT------CTATCTG--TGTGTATGTGTGTGCGGGCGCG----AG----TGCGTTTGTGTGTG-GAAATGCATTAATTACACCAATACCAA------GGCAGATGCAGCAGCAACGG---------CTACAACAA-------------------AATAGTTAATA---TAA---AAATAC-A	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A-ACGCCGCCAAAACACAC--AG----CAAAATA------A-----AA------AT---TC---TTATCTAAA------------------------A-AAAATAAATATAAATACGGCAA--GTGGCC-CCT---------------CCCGT------------------------CT------C------------CCCCTCCTCCA------TC---TAAGCGTGTGTGTGTGTGA--------------G-AGCG-TTGG--TGTATCT----GTGTATCTGTGCGCG----------AGTTTTTGTGAGTTTGTGTG-AAAATGCATTAATTACACCAACACCG---------CAATA---------ACAACAACAACAAC------AACGCCAACAA---AAGTAA----------TA---CAAATCAAATAC-A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................GTATCT----GTGTATCTGTGCGCG----------...........................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................ATA---------ACAACAACAACAAC------AACGCC...........................................	23	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................CCT---------------CCCGT------------------------CT------C------------CCCCTCCTCC.........................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................TCCA------TC---TAAGCGTGTGTGTGT..............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................GTGTGTGTGA--------------G-AGCG-TTGG--T..............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................CA------TC---TAAGCGTGTGTGTGTGTGA--------------G-..........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................A--------------G-AGCG-TTGG--TGTATCT----GT..................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................GTGTGTGA--------------G-AGCG-TTGG--TGTATC.........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................GCC-CCT---------------CCCGT------------------------CT------C------------CCCCTCCTCC.........................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GTGAGTTTGTGTG-AAAATGC...............................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................TCCA------TC---TAAGCGTGTGTGTGTG.............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................TATAAATACGGCAA--GTGGCC-CCT---------------CC...................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................ATACGGCAA--GTGGCC-CCT---------------CCC..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TA---------ACAACAACAACAAC------AACGCCAAC........................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACAACAAC------AACGCCAACAA---AAGT...............................	24	1	1.00	1	0	1	0	0	0	0
...........AAACACAC--AG----CAAAATA------A-----AA------AT---TC---.........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................CCA------TC---TAAGCGTGTGTGTGTG.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................TGG--TGTATCT----GTGTATCTGT..........................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TA---------ACAACAACAACAAC------AAC..............................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

AAACGCCGCCAAAACACACACAA---GCAAA--AAAAATAA-----AA------ATTG------TTATCTAAACAA---AAAAAT-----------------ATAAATATAAATACGGCAAGAGTGGCC-CCT---------------CCCGT------------------------C-------T------------CCCCATC--TATC----TC---TGAGTGCG----CGTGTG------TGTGTGA--G-AGCG-TTGG----TGTAT--CTGTGCGC-----CGCG----------AGTT-ATGTGAGTTTGTGTG-AAAATGCATTAATTACACCAACACCGC------AATA------------ACAACAGCAACAAC------AACAGCAACCA---CAACAA----------GATTA-A-------AAT-A	Size	Hit Count	Total Norm	Total
No Reads

droPer2

A-ACGCCGCCAAAACACACACGA----CAAAGA--G----AAAAATAAATTAAAATTATTAGTGTTATGTACA------------------------AAAT---------------AAAAA--GTGCCC-CCT------------AAGCCCCC------------------------TG------CTGCTACCAACAGCCCCCTA---------------TCTATGTG----TATGTG------------------------------TATCT------GTGTGTGTTCGCG----------AGTGCTTGTGTGTGTG--TGAAAAATGCATTAATTACACCAATTCCAA------GGCGA-AAAAGCTACAACAAAA------AA------TACCACAGC----------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................GTGTGTGTG--TGAAAAATGC...............................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TCT------GTGTGTGTTCGCG----------AGTGC......................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................GTGCTTGTGTGTGTG--TGAAA....................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................G----------AGTGCTTGTGTGTGTG--TGAAAA...................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................GTTCGCG----------AGTGCTTGTGTGTGT............................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GTGTGTTCGCG----------AGTGCTTGT..................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................TTGTGTGTGTG--TGAAAAATGC...............................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................TG----TATGTG------------------------------TATCT------GTGTGT............................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0

droWil2

A--CGCCGCCAAAACACACACACAAAGCAAA--AAGTTTAA-----AA------ATTA---------TAAAAA--AGTTAATAATACCTCAACAAAAAAAA---------------GGCAA--GTACTT--TGCCCGTGCACCCCA--CTCCCCTCTATCGCTGCATCTCTATCTCTCT--------------------CCCTCCTACA--CTTATCATCTTGATGTG----TGAGTGC--------------GTG--TGCG-TTGTGTGTGT--GTGTGCGTGTGTATGTG----------AG----TGTGTGTTTATGTG-AAAATGCATTAATTGCAACAACA--------------------GCAACAACCACATCAACAAC------AACAACAACAG---GAGAAA----------T---GTAA-----ATACAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................................ATTAATTGCAACAACA--------------------GCAA.......................................................................	20	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................GTGTGCGTGTGTATGTG----------AG----TGTGTG...............................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................GTG----TGAGTGC--------------GTG--TGCG-TTGT..............................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................GATGTG----TGAGTGC--------------GTG--TGCG-TTGTGT............................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................GAGTGC--------------GTG--TGCG-TTGTGT............................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................ATCTTGATGTG----TGAGTGC--------------............................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................ATGTG----------AG----TGTGTGTTTATGTG-AAAATG................................................................................................................	27	1	1.00	1	0	0	1	0	0
..................................................................................AATACCTCAACAAAAAAAA---------------.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................CTATCTCTCT--------------------CCCTCCTACA--CTTATCAT..............................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................GTGC--------------GTG--TGCG-TTGTGTGT..........................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................CTTGATGTG----TGAGTGC--------------GTG--.......................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................TG----------AG----TGTGTGTTTATGTG-AAA...................................................................................................................	21	1	1.00	1	0	0	0	0	1
...............................................................................................................................TT--TGCCCGTGCACCCCA--CTC..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................TGTATGTG----------AG----TGTGTGTTTATGTG-AA....................................................................................................................	26	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................TTGATGTG----TGAGTGC--------------GTG--T......................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................G----TGTGTGTTTATGTG-AAAA..................................................................................................................	19	1	1.00	1	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................AACAG---GAGAAA----------T---GTAA-----ATA...	19	1	1.00	1	0	0	1	0	0
......................................................................................................................................................CCCCTCTATCGCTGCATCTCT..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................TCTTGATGTG----TGAGTGC--------------GTG--TGCG-TT................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................TGAGTGC--------------GTG--TGCG-TTGTGTGT..........................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................GTATGTG----------AG----TGTGTGTTTAT..........................................................................................................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................GATGTG----TGAGTGC--------------GTG--TGC....................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................CTATCGCTGCATCTCTATCTCTC.......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................C--------------GTG--TGCG-TTGTGTGTGT--GTGTG.................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................TGC--------------GTG--TGCG-TTGTGTGTG.........................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................GTGCGTGTGTATGTG----------AG----TGT..................................................................................................................................	20	3	0.33	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................GT--GTGTGCGTGTGTATGTG----------AG----TGT..................................................................................................................................	24	3	0.33	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................GT--GTGTGCGTGTGTATGTG----------A..........................................................................................................................................	20	5	0.20	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................G-TTGTGTGTGT--GTGTGCGT..............................................................................................................................................................	19	13	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................G-TTGTGTGTGT--GTGTGCG...............................................................................................................................................................	18	15	0.07	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................TGTGTGT--GTGTGCGTGTGTA.........................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................GT--GTGTGCGTGTGTATGTG----------...........................................................................................................................................	19	20	0.05	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................TGTGTGT--GTGTGCGTGTGTATG.......................................................................................................................................................	22	20	0.05	1	0	0	0	0	1

droVir3

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG--TTTGTGTGA--------------GTACGTGCGTAAGTTTATGCATGTGTGTGCGAGTGGGCA----------AT----TGTGTTTATGTGCG-AAAACGCATTAATTACACAAATACAAA------TGCAAATGCAAATACAACAACA------------------------------------AAAGTA----------------AAT-A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................TGTG--TTTGTGTGA--------------GTACGTGC....................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TGTG--TTTGTGTGA--------------GTACGTG.....................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................AAA------TGCAAATGCAAATACAACAAC................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GCATGTGTGTGCGAGTGGG.......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TGTGCGAGTGGGCA----------AT----TGTG.................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GTGTGA--------------GTACGTGCGTAAGTTTATGC........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGCA----------AT----TGTGTTTATGTGC........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TGTGA--------------GTACGTGCGTAAGTTT............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TGCATGTGTGTGCGAGTGGG.......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGCA----------AT----TGTGTTTATGTGCG-......................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GTTTATGCATGTGTGTGCGAGTGGGC......................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................TGTGTGCGAGTGGGCA----------AT----TGT..................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG--TTTGTGTGA--------------GTACGTGC....................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GCAAATGCAAATACAACAACA------------------------------------AAAGT......................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GTGTGCGAGTGGGCA----------AT----TGTGT................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TGTGCGAGTGGGCA----------AT----TGTGTC...............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TATGCATGTGTGTGCGAGTGG........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................TGTGTTTATGTGCG-AAAAC.................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ATGCATGTGTGTGCGAGTGGG.......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

G-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTG--TGTGCGTGT--------------GCGTATGTTGA----TGCAT--GTGTATGCGTGTAGGCG----------AT----TGTGTTTATTTGGG-AAAACGCATTAATTACACAAATACAAA------TGCAAATGCGAATGCGAGTG---------C------AAATACAAATA---CAACAACAAATGTA----------------AAT-A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................ATACAAA------TGCAAATGCGAATG.......................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................AGTG---------C------AAATACAAATA---CAACAACAAATGT......................	29	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................ATGCGAATGCGAGTG---------C------AAATACAAATA---...................................	27	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................CAT--GTGTATGCGTGTAGGC......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droGri2

T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTA--TGCATGTGA--------------GCGAGTGCGTGTATGTGTAT--ATGTGTGCGTGTGGGCG----------AT----TGTGTTTATG--TG-AAAACGCATTAATTACACAAATACAAA------TGCAAATACAACAACAAATG---------T------AAATACAAATAAAATACAAATACAATC---------A-------AAC-A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................................................TGTGCGTGTGGGCG----------AT----TGTG.................................................................................................................................	20	1	1.00	1	0	1

dsi_7761

2l:145013-145142 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.6	-16.4	-16.4