ID:

dsi_7683

 Coordinate:

2r:13602302-13602451 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.7 -18.5 -18.5

Flybase annnotation

CDS [2r_13602164_13602352_+]; three_prime_UTR [2r_13602353_13602684_+]; exon [2r_13602164_13602684_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
CGCCAACGCCTACGCCGATTCCCACGGCATCACCAAGCGCCAGCGGCCAGGTACAGACAGCGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAATAGGAAACTTGTTTAATTTTTTTTGTATAAAATACATATTTGTTCTTGTTTTTCCCGCACGCATTTGACCAATTGAATTGGCGGCGTCTATGTTTTACGAGTAGCCTTTCTTAGAGCATGCCTTTTACTACTGTTAATGTAGCTTCATTTGT
*********************************************************************............(((..((....((((((((((((.........(((((........))))).........))))))))))))((((.((.((((((....))))))))))))..))..))).********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR902008
ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
..............................................................................................................................................................................................TTTTACGAGTAGCCTTTCTTAGAGCA.................................. 26 0 1 18.00 18 6 6 5 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TTACGAGTAGCCTTTCTTAGAGCA.................................. 24 0 1 10.00 10 7 2 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TTACGAGTAGCCTTTCTTAGAGCATGC............................... 27 0 1 9.00 9 7 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATGTTTTACGAGTAGCCTTTCTTAGA..................................... 27 0 1 6.00 6 5 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTACGAGTAGCCTTTCTTAGAGCATGCC.............................. 28 0 1 6.00 6 3 0 3 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TACGAGTAGCCTTTCTTAGAGCATGC............................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................TGAGGATTACTAGCACTGAGGA............................................................................................................................................................... 22 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0
...........................................................................................TGAGGAATAGGAAACTTGTTTAATT...................................................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................TTGGCGGCGTCTATGTT.......................................................... 17 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATGTTTTACGAGTAGCCTTTCTTAG...................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTTTCCCGCACGCATTTGACCAAT............................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AATTGAATTGGCGGCGTCTATGTTT......................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................TTTCCCGCACGCATTTGACCAATTG............................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGCCTTTTACTACTGTTAATGTAGC......... 25 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
...................................................TACAGACAGCGGAAGCCATGAGGAT.............................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TACGAGTAGCCTTTCTTAGAGCATGCCT............................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTCTTAGAGCATGCCTTTTACTACTGTT................. 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTTAGAGCATGCCTTTTACTACTGTT................. 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTTGACCAATTGAATTGGCGGCGTC................................................................ 25 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0
..........................................................AGCGGAAGCCATGAGGATTAC........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................CGAGTAGCCTTTCTT........................................ 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTTTCCCGCACGCATTTGACCAATTGAAT.......................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................GTACAGACAGCGGAAGCCATGAGGAT.............................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCTATGTTTTACGAGTAGCCT............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CCCGCACGCATTTGACCAATTGAAT.......................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................GAGGATGAGGAATAGGAAACT............................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................TTGACCAATTGAATTGGCGGCGTCTA.............................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTTAGAGCATGCCTTTTACTACTGT.................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGCCTTTTACTACTGTTAATG............. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TGCCTTTTACTACTGTTAATGTAGCT........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGACCAATTGAATTGGCGGCGTCTATG............................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................ACAGACAGCGGAAGCCATGAG................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................CAGGTACAGACAGCGGAAGCCATGAGGAT.............................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGAGGAATAGGAAACTTGTTTAATTTT.................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTTAGAGCATGCCTTTTACTACTGT.................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TACGAGTAGCCTTTCTTAGAGCATG................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGCCTTTCTTAGAGCATGCCTTT........................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AGTAGCCTTTCTTAGAGCA.................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGGCGGCGTCTATGTTTTACGAGTAG................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................TACGAGTAGCCTTTCTTAGAGCATGCCC............................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................TACTAGCACTGAGGATGAGGAA........................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTACGAGTAGCCTTTCTTAGA..................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTACGAGTAGCCTTTCTTAGAGCA.................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTCTTAGAGCATGCCTTTTACTACTGT.................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................AGCCATGAGGATTACTAGCACTGAGGA............................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AATTGAATTGGCGGCGTCTATGTT.......................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGCCTTTTACTACTGTTAAT.............. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................TTTCCCGCACGCATTTGACCAATTGAA........................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CCAATTGAATTGGCGGCGTCTAT............................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................GAGGAATAGGAAACTTGTTTAAT....................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTGGCGGCGTCTATGTTTTACGAGT.................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTTACTACTGTTAATGTAGCTT....... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................GGATTACTAGCACTGAGGATGAG........................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTTACTACTGTTAATGTAGCTTCATT... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TTACTAGCACTGAGGATGAGG.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................CTTAGAGCATGCCTTTTACTAC..................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................................GCGGCCAGGTACAGACAGCGGAAGC....................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TTACGAGTAGCCTTTCTTAGAGCATGCCTT............................ 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGACCAATTGAATTGGCGGCGTCTA.............................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TAGCACTGAGGATGAGGAATAGGAAACT............................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TTTCCCGCACGCATTTGACCA................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GAGTAGCCTTTCTTAGAGCA.................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGCCTTTCTTAGAGC................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................TGAGGAATAGGAAACTTGTTTAATTT..................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GGCGTCTATGTTTTACGAGT.................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................AGCCATGAGGATTACTAGCACTGAG................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................CTCACGCATTTGACCAATTGAATTGGC...................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGAGGATGAGGAATAGGAAACTTGTT........................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTACGAGTAGCCTTTCTTAGAGC................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TACTGTTAATGTAGCTTCATTTGT 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................TACGAGTAGCCTTTCTTAGAGCAT................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................TATTTGTTCTTGTTTTTCCCGCACGCA......................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTGTTTTTCCCGCACG........................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCCCGCACGCATTTGACCAATTGAA........................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................CAGCGGCCAGGTACAGACAGCGGA.......................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ACTGTTAATGTAGCTTCAT.... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTTAATGTAGCTTCATTTGT 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TTTCCCGCACGCATTTGACCAATTGA............................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTACGAGTAGCCTTTCTTAGAGAT.................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGACCAATTGAATTGGCGGCGTC................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................AGCCATGAGGATTACTAGCACTGAGG................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................GCCAGGTACAGACAGCGGAAGCCATG................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTGGCGGCGTCTATGTTTTACGAGTA................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................CACTGAGGATGAGGAATAGGAAACT............................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGAGGAATAGGAAACT............................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACGAGTAGCCTTTCTTAGAGCATGCCT............................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTACGAGTAGCCTTTCTTAGAGCATGCCT............................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................TACTAGCACTGAGGATGAGGAATAGGA................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGTAGAGCATGCCTGTT.......................... 17 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGTTTAACTCTTTTTGTAGAAAA........................................................................................................................ 23 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................AAGTTTTTTTGTATGAAATA...................................................................................................................... 20 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TTGAATTGGCTGCGACGATGT........................................................... 21 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCCGTAGAGCATGCCTGTT.......................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................ATTGCTACTGTTAATGTAACT........ 21 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCGGTTGCGGATGCGGCTAAGGGTGCCGTAGTGGTTCGCGGTCGCCGGTCCATGTCTGTCGCCTTCGGTACTCCTAATGATCGTGACTCCTACTCCTTATCCTTTGAACAAATTAAAAAAAACATATTTTATGTATAAACAAGAACAAAAAGGGCGTGCGTAAACTGGTTAACTTAACCGCCGCAGATACAAAATGCTCATCGGAAAGAATCTCGTACGGAAAATGATGACAATTACATCGAAGTAAACA
**********************************************************............(((..((....((((((((((((.........(((((........))))).........))))))))))))((((.((.((((((....))))))))))))..))..))).********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
................................................................................................................................................................................ACCGCCGCAGATACAAAAT....................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................GTGACTGCCACTCCATATCC.................................................................................................................................................... 20 3 2 0.50 1 0 1 0 0 0 0 0
...................................................................................TGACTGCCACTCCATATCC.................................................................................................................................................... 19 3 4 0.25 1 0 0 1 0 0 0 0
...........................................................................AATTATCGGGACTCCTAATC........................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0
..........ATGCGGCCAAGGGTG................................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 1 0 0 0
.....................GGTGCCCTAGTGATTCGG................................................................................................................................................................................................................... 18 3 20 0.15 3 0 1 0 0 0 2 0
..................................................................................GTGACTGCCACTCCATATC..................................................................................................................................................... 19 3 9 0.11 1 0 0 1 0 0 0 0
.....................GGTGCCCTAGTGATTCGGG.................................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 0 1 0
.................................................................................................................................................................................................ATGCTCATCGGAAAAT......................................... 16 2 20 0.05 1 0 0 0 0 0 0 1
......GGGAATGCGGCTAAGG.................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0
................................................................................................................................................................................................AGTGCTCATCGGGAAGTA........................................ 18 3 20 0.05 1 0 0 0 1 0 0 0
........GGATGCGGCCAAGGGG.................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:13602252-13602501 + dsi_7683 CGCCAACGCCTACGCCGATTCC------------CAC------GGCATCACCAA---GCG---CCA---------------------GCGGCCAGGTACAGACAG-CGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droSec2 scaffold_1:10440152-10440401 + CGCCAACGCCTACGCCGATTCC------------CAA------GGCATCACCAA---GCG---CCA---------------------GCGGCCAGGTACAGACAG-CGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CA--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
dm3 chr2R:12931725-12931975 + CGCCAACGCCTACGCCGATTCC------------CAC------AGCATCACCAA---GCG---CCA---------------------GCGGCCAGGTAGAGACAG-CGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA--------------------------------------TTTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droEre2 scaffold_4845:12910364-12910612 - CGCCAACGCCTACGCCGATTCC------------CAC------GGTCTCACCTA---GCG---CCA---------------------GCGGCCAGGCACAGACAG-CGGAAGCCATCAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAC---------------------------------------TTT--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droYak3 2R:18535502-18535751 - CGCCAACGCCTACGCCGATTCC------------CAC------GGCCTCACCTA---GCG---CCA---------------------GCGGCCAGGTACAGACAG-CGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAATTG-GCTGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droEug1 scf7180000409672:2186433-2186681 - CGCCAACGCCCACGCCGATTCC------------GAC------GGCATCCCCCA---GCG---CCA---------------------GCGGCCAAGTTCAGACAG-CGGAAGCCATGAGAGTTAACAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------ATT--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----TA--------------------TACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droBia1 scf7180000301754:5179527-5179777 + CGCCCACTCCCACGCCGGTGCC------------CAC------GGCTTCGCCCA---GCG---CCA---------------------GTGGTCAGGTTCAGCCAG-CGGAAGCCATGAGAGTAAACAGCAATGAGGACGAGGAA---------TAGGAAACTTGTTTGA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----CA-----------------C-AAACGCATTCGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTC-TAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droTak1 scf7180000415243:204042-204277 + CGCCGACGCCCACGCCGATTCC------------CAC------G---------------------------------------------------GTCCAGACAG-CGGAAGCCATGAGAGTAACGAGCAACGAGGATGAGGAA---------TAGAAAACTTGTTTAA---------------------------------------TTT--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----CA------AACACCC---CAAAAACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droEle1 scf7180000491214:1406224-1406477 - CGCCAACGCCCACGCCGATTCC------------CAC------GGCTTCACCTA---T------------------------------TGGCCAAGTTCAGACAC-CGGAAGCCATGAGAGTTAACAGCACTGAGGATGAGGAATGA----A-TAGGAAACTTGTTTAA--------------------------------------CTTT-TTT---TTGTATAAAATACAT--ATTTGTTCT-GTTTTTGCCCCCCCCA--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTGTGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droRho1 scf7180000780084:390509-390754 - CGCCAACGCCCACGCCGGTTCC------------CACGGCCACGGCTTCACCCA------------------------------------GCCAGGTTCAGACAC-CGGAAGCCATGAGAGTTAACAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----C---------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTGTGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGT
droFic1 scf7180000453948:2496984-2497236 - CGCCAACGCCGACGCCGATTCC------------CACGGTCACGGCTTCACCGA---GCC---CCG---------------------GCGGCCAAGTTCAGACAG-CGGAAGCCATGAGAGTTAACAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TT---TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----C---------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTACGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGATCCATTTGT
droKik1 scf7180000302470:1367998-1368305 + CGCCCACGCCCACGCCAACGCCCACTCCGCTTCCGTTGGCCACGGCATCGCCTA---GCC---CCGCCA------------------C---------CCAGACAG-CGGTAGCCATGAGAGTTAACAGCACTGAGGATGAGGAATCAGGATGTTAGGAAACTTGTTTAA-------------------TATATATATTTCTC-----CTTT-TTT-TTGTGTATAAAATACATATATTTGTTCTTGTTTTT-CC-----CCCGCGCACA---------C-ACACGCATTTGT-CCAATTGAATTG-GCGGCGTCTGTGCTATACGAGAGTAGCCTTTCTAATAGCATGCCTTTTACT--ACTGTAGCCTGTAAT---GTAGCTACATTTGT
droAna3 scaffold_13266:13668666-13668948 - CGCCAACGCCCACGCCCATACC------------GGCGGAGACGGCTCCGAGCA---GCG---CCGGCAGCAGCAGCAGCAACAGCAGCAGCCAAGTTCAGACAG-CGGAAGCCATGAGAGTTAACAGCACTGAGGACAAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTA--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTTTTCCCC--CC--------------------TGCGCATTTGT-CCAATTGAATTGGGCGGCGATCATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACTTTATTGT------TAAT---GTAGCTACATTTGT
droBip1 scf7180000396759:2468290-2468567 + CGCCAACGCCCACGCCCATACC------------GGCGGAGGCGGGCTCGAGCA---GCGTAGCCA---------------------GCAGCCAAGTTCAGACAG-CGGAAGCCATGAGAGTTAACAGCACTGAGGACAAGGAA---------TAGGAGACTTGTTTAA---------------------------------------TTA--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CCCTCCCCA------AACCCCCCCCTGAATGCGCATTCGT-CCAATTGAATTGGGCGGCGATGATGTTTTACG--AGTAGCCTTGATTAGAGCATGCCTTTTACT--ATTGT------TAAT---GTAGCTACATTTGT
dp5 3:7309093-7309372 - CGCCGACACCCACGCCGATACC------------GAC------AGCCTCGCCCA---GCG---CCAGCGC---------CAGCAGCAGCAGCCAGGCTCGGACAA-CGGAGGCCACGAAGGTGGATGCGGATGAGGATGTGGAATAAGGAGA-TTGGAAGCTTGTTCAC---------------------------------------CTT-TTTTTGTTGTATAAAATACATATATTTGTTCTTGTTTTC-CC-----CC-----------------CAAGACGCACTCGGTCCAATTGAATTG-GCGGCGTTTATGTTTTACA--AGTAGCCTT-CATAGAGCATGCCT-TTACT--ACTGT------TAATATTATAGCTACATTTGT
droPer2 scaffold_2:7509927-7510200 - CGCCAACACCCACGCCGATACC------------GAC------AGCCTCGCCCA---GCG---CCAGC---------------AGCAGCAGCCAGGCTCGGACAA-CGGAGGCCACGAAGGTGGATGCGGATGAGGATGTGGAATAAGGAGA-TTGGAAGCTTGTTCAC---------------------------------------CTT-TTTTTGTTGTATAAAATACATATATTTGTTCTTGTTTTC-CC-----CC-----------------CAAGACGCACTGGGTCCAATTGAATTG-GCAGCGTTTATGTTTTACA--AGTAGCCTT-CATAGAGCATGCCT-TTACT--ACTGT------TAATATTATAGCTACATTTGT
droWil2 scf2_1100000004513:4963806-4964075 + CACCAACGCCCACTCCGATACC------------AAC------TACTCCACCAATTAGTG---CCA---------------------GCA---AGAAACAGAAATCCGG----------------CGGCAAT---GCAGTGGAA---------GAGTAAATTCATTTTATATGAGAGAACAATTGCAATTCCAATTGTTCTTCACTACTTTCTCC-TTTTAAAGCAAGCACATGATTTTGTTTTTGTTTTG-T----------------------------CACGCAGTTGT-CCAATTGAATTG-GCGGCGTCAATGTTT--CG--TTTAGCTTTTCTG-AAACAAGCCATTTACT--CCAGT------TAAT---AATGCGGCCCTCAT
droVir3 scaffold_13324:2505744-2505827 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCATTGT-CCAATTGAATTG-GCAGCGTCTGTGTTA---A--TATGGCCTTA-TTAAAACAT----TCAACT--ACT--------TATT---ATAGCTACTTTTGC
droMoj3 scaffold_6496:26389928-26389943 + CACCGACAGCAACACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:4875671-4875717 + CACCGACACCCACGCCGATACC------------TTC------AGCTCCAACTA---GTG---ACA---------------------GTGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGCCAACGCCTACGCCGATTCC------------CAC------GGCATCACCAA---GCG---CCA---------------------GCGGCCAGGTACAGACAG-CGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................TTTTACG--AGTAGCCTTTCTTAGAGCA.............................................26118.001800000065006001000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCA.............................................24110.001000010070002000000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCATGC..........................................2719.00900000072000000000
..........................................................................................................................................................................................................................................................................................................................TATGTTTTACG--AGTAGCCTTTCTTAGA................................................2716.00600000051000000000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCATGCC.........................................2816.00600000033000000000
.................................................................................................................................................................................................................................................................................................................................TACG--AGTAGCCTTTCTTAGAGCATGC..........................................2612.00200000020000000000
...................................................................................................................TGAGGATTACTAGCACTGAGGA..............................................................................................................................................................................................................................................................2212.00200000000000011000
.........................................................................................................................................TGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TT.....................................................................................................................................................................................2512.00200000010100000000
..............................................................................................................................................................................................................................................................................................................TTG-GCGGCGTCTATGTT.......................................................................1712.00200000000002000000
..........................................................................................................................................................................................................................................................................................................................TATGTTTTACG--AGTAGCCTTTCTTAG.................................................2612.00200000010001000000
......................................................................................................................................................................................................................................................TTTTT-CC-----CG--------------------CACGCATTTGA-CCAAT.............................................................................................2512.00200000020000000000
.......................................................................................................................................................................................................................................................................................................AATTGAATTG-GCGGCGTCTATGTTT......................................................................2512.00200000000000002000
........................................................................................................................................................................................................................................................TTT-CC-----CG--------------------CACGCATTTGA-CCAATTG...........................................................................................2512.00200000020000000000
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTTTACT--ACTGT------TAAT---GTAGC.........2512.00200010010000000000
................................................................................................TACAGACAG-CGGAAGCCATGAGGAT.............................................................................................................................................................................................................................................................................2512.00200000020000000000
.................................................................................................................................................................................................................................................................................................................................TACG--AGTAGCCTTTCTTAGAGCATGCCT........................................2812.00200000020000000000
...............................................................................................................................................................................................................................................................................................................................................TTCTTAGAGCATGCCTTTTACT--ACTGT------T....................2812.00200000001001000000
.................................................................................................................................................................................................................................................................................................................................................CTTAGAGCATGCCTTTTACT--ACTGT------T....................2612.00200000011000000000
...............................................................................................................................................................................................................................................................................................TTTGA-CCAATTGAATTG-GCGGCGTC.............................................................................2512.00200010000001000000
.......................................................................................................AG-CGGAAGCCATGAGGATTAC..........................................................................................................................................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................CG--AGTAGCCTTTCTT...................................................1511.00100000000001000000
.......................................................................................................................................................................................................................................................TTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAAT........................................................................................2911.00100000001000000000
...............................................................................................GTACAGACAG-CGGAAGCCATGAGGAT.............................................................................................................................................................................................................................................................................2611.00100000010000000000
........................................................................................................................................................................................................................................................................................................................TCTATGTTTTACG--AGTAGCCT........................................................2111.00100000001000000000
............................................................................................................................................................................................................................................................CC-----CG--------------------CACGCATTTGA-CCAATTGAAT........................................................................................2511.00100000001000000000
....................................................................................................................................GAGGATGAGGAA---------TAGGAAACT.....................................................................................................................................................................................................................................2111.00101000000000000000
................................................................................................................................................................................................................................................................................................TTGA-CCAATTGAATTG-GCGGCGTCTA...........................................................................2611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................CTTAGAGCATGCCTTTTACT--ACTGT------.....................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTTTACT--ACTGT------TAAT---G.............2111.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTTTACT--ACTGT------TAAT---GTAGCT........2611.00100000010000000000
.................................................................................................................................................................................................................................................................................................TGA-CCAATTGAATTG-GCGGCGTCTATG.........................................................................2711.00100000000000010000
.................................................................................................ACAGACAG-CGGAAGCCATGAG................................................................................................................................................................................................................................................................................2111.00100010000000000000
............................................................................................CAGGTACAGACAG-CGGAAGCCATGAGGAT.............................................................................................................................................................................................................................................................................2911.00100000001000000000
.........................................................................................................................................TGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-T..................................................................................................................................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................TCTTAGAGCATGCCTTTTACT--ACTGT------.....................2611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................TACG--AGTAGCCTTTCTTAGAGCATG...........................................2511.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................TAGCCTTTCTTAGAGCATGCCTTT......................................2411.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................AGTAGCCTTTCTTAGAGCA.............................................1911.00100000000001000000
...............................................................................................................................................................................................................................................................................................................TG-GCGGCGTCTATGTTTTACG--AGTAG...........................................................2611.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................TACG--AGTAGCCTTTCTTAGAGCATGCCC........................................2811.00100000010000000000
..........................................................................................................................TACTAGCACTGAGGATGAGGAA---------..............................................................................................................................................................................................................................................2211.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................TTTTACG--AGTAGCCTTTCTTAGA................................................2311.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................TTTACG--AGTAGCCTTTCTTAGAGCA.............................................2511.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................TTCTTAGAGCATGCCTTTTACT--ACTGT------.....................2711.00100000000001000000
..............................................................................................................AGCCATGAGGATTACTAGCACTGAGGA..............................................................................................................................................................................................................................................................2711.00100000010000000000
.......................................................................................................................................................................................................................................................................................................AATTGAATTG-GCGGCGTCTATGTT.......................................................................2411.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTTTACT--ACTGT------TAAT---..............2011.00100001000000000000
........................................................................................................................................................................................................................................................TTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAA.........................................................................................2711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................CCAATTGAATTG-GCGGCGTCTAT..........................................................................2311.00100000000000001000
..........................................................................................................................................GAGGAA---------TAGGAAACTTGTTTAA---------------------------------------T......................................................................................................................................................................................2311.00100000001000000000
..............................................................................................................................................................................................................................................................................................................TTG-GCGGCGTCTATGTTTTACG--AGT.............................................................2511.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................TTTTACT--ACTGT------TAAT---GTAGCTT.......2311.00100000000001000000
......................................................................................................................GGATTACTAGCACTGAGGATGAG..........................................................................................................................................................................................................................................................2311.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................TTTTACT--ACTGT------TAAT---GTAGCTTCATT...2711.00100000010000000000
.........................................................................................................................TTACTAGCACTGAGGATGAGG.........................................................................................................................................................................................................................................................2111.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................CTTAGAGCATGCCTTTTACT--AC..............................2211.00100001000000000000
.......................................................................................GCGGCCAGGTACAGACAG-CGGAAGC......................................................................................................................................................................................................................................................................................2511.00100010000000000000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCATGCCTT.......................................3011.00100000001000000000
.................................................................................................................................................................................................................................................................................................TGA-CCAATTGAATTG-GCGGCGTCTA...........................................................................2511.00100000010000000000
.............................................................................................................................TAGCACTGAGGATGAGGAA---------TAGGAAACT.....................................................................................................................................................................................................................................2811.00100000001000000000
........................................................................................................................................................................................................................................................TTT-CC-----CG--------------------CACGCATTTGA-CCA...............................................................................................2111.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................G--AGTAGCCTTTCTTAGAGCA.............................................2011.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................AGCCTTTCTTAGAGC..............................................1511.00100000000001000000
.........................................................................................................................................TGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-...................................................................................................................................................................................2611.00100000000001000000
....................................................................................................................................................................................................................................................................................................................GGCGTCTATGTTTTACG--AGT.............................................................2011.00100000000001000000
..............................................................................................................AGCCATGAGGATTACTAGCACTGAG................................................................................................................................................................................................................................................................2511.00100000000010000000
...................................................................................................................................TGAGGATGAGGAA---------TAGGAAACTTGTT.................................................................................................................................................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................TTTACG--AGTAGCCTTTCTTAGAGC..............................................2411.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................T--ACTGT------TAAT---GTAGCTTCATTTGT2411.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................TACG--AGTAGCCTTTCTTAGAGCAT............................................2411.00100000001000000000
........................................................................................................................................................................................................................................T--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCA........................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................................................TTGTTTTT-CC-----CG--------------------CACG..........................................................................................................1611.00100000000001000000
..........................................................................................................................................................................................................................................................T-CC-----CG--------------------CACGCATTTGA-CCAATTGAA.........................................................................................2511.00100000010000000000
................................................................CA---------------------GCGGCCAGGTACAGACAG-CGGA.........................................................................................................................................................................................................................................................................................2411.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................ACTGT------TAAT---GTAGCTTCAT....1911.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGT------TAAT---GTAGCTTCATTTGT2111.00100000001000000000
........................................................................................................................................................................................................................................................TTT-CC-----CG--------------------CACGCATTTGA-CCAATTGA..........................................................................................2611.00100000001000000000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGAT.............................................2411.00100000000001000000
.................................................................................................................................................................................................................................................................................................TGA-CCAATTGAATTG-GCGGCGTC.............................................................................2311.00100000010000000000
..............................................................................................................AGCCATGAGGATTACTAGCACTGAGG...............................................................................................................................................................................................................................................................2611.00100000010000000000
..........................................................................................GCCAGGTACAGACAG-CGGAAGCCATG..................................................................................................................................................................................................................................................................................2611.00100000000001000000
..............................................................................................................................................................................................................................................................................................................TTG-GCGGCGTCTATGTTTTACG--AGTA............................................................2611.00100000000000010000
................................................................................................................................CACTGAGGATGAGGAA---------TAGGAAACT.....................................................................................................................................................................................................................................2511.00100000001000000000
.........................................................................................................................................TGAGGAA---------TAGGAAACT.....................................................................................................................................................................................................................................1611.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................ACG--AGTAGCCTTTCTTAGAGCATGCCT........................................2711.00100000000001000000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCATGCCT........................................2911.00100000001000000000
..........................................................................................................................TACTAGCACTGAGGATGAGGAA---------TAGGA.........................................................................................................................................................................................................................................2711.00100000000000001000
droSec2
CGCCAACGCCTACGCCGATTCC------------CAA------GGCATCACCAA---GCG---CCA---------------------GCGGCCAGGTACAGACAG-CGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CA--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................ATGCCTTTTACT--ACTGT------TAAT---GTAGC.........2611.0011000
...................................AA------GGCATCACCAA---GCG---CCA---------------------GCGGCC..........................................................................................................................................................................................................................................................................................................2511.0010100
...................................................................................................................................TGAGGATGAGGAA---------TAGGAAAC......................................................................................................................................................................................................................................2111.0010100
......................................................................................................................GGATTACTAGCACTGAGGATGAGGA........................................................................................................................................................................................................................................................2511.0011000
.......................................................................................................................................................................................................................................................................................................AATTGAATTG-GCGGCGTCT............................................................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTTTACT--ACTGT------TAAT---GTAGCT........2611.0011000
........................................................................................CGGCCAGGTACAGACAG-CGGA.........................................................................................................................................................................................................................................................................................2111.0010001
...................................................................................................................................TGAGGATGAGGAA---------TAGGG.........................................................................................................................................................................................................................................1811.0010001
...................................................................................................AGACAG-CGGAAGCCATGAG................................................................................................................................................................................................................................................................................1911.0010100
..............................................................................................................................AGCACTGAGGATGAGGAA---------TAGGA.........................................................................................................................................................................................................................................2311.0010010
.................................................................................................................................................................................................................................................................................................................................................CTTAGAGCATGCCTTTTACT--ACTGT------TA...................2711.0010010
..............................................................................................................................................................................................................................................................................................................................................TTTCTTAGAGCATGCCTTTTACT--ACTGT------.....................2811.0011000
...............................................................................................................................GCACTGAGGATGAGGAA---------TAGGA.........................................................................................................................................................................................................................................2211.0010010
..............................................................................................................................................................................................................................................................................................................................................TTTCTTAGAGCATGCCTTT......................................1911.0011000
.................................................................................................ACAGACAG-CGGAAGCCATGAGG...............................................................................................................................................................................................................................................................................2211.0010100
dm3
CGCCAACGCCTACGCCGATTCC------------CAC------AGCATCACCAA---GCG---CCA---------------------GCGGCCAGGTAGAGACAG-CGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA--------------------------------------TTTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCATG...........................................261254.0025400000000000000000000001000000000000002111000101101002000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000102150020000000000000000000000000000000001412000000000000000001319000000710015015115006300000000000000000000000000000000000000000000000030000000000021110004500005000040000000100001114100020
..............................................................................................................................................................................................................................................................................................................................TTTTACG--AGTAGCCTTTCTTAGAGCA.............................................261199.001990000000000000000000000010000000000000100000100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202114625000000000000000000000000000000000001300602150000002020106000100140301130000000000000000000001000000000000000000000000000000100000000000200000012000010020150121001000024487100000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCA.............................................24181.008100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000002000001000000002201000003000204051010030000000000000000000000000000000000000000000000001000000000000002100500001101070000101000014222200000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCATGCC.........................................28152.005200000000000000000000000000000000000010000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000020000000000100010000000000000000000000000000000000000000000000000000000000000000000506140120007000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000800000
.................................................................................................................................................................................................................................................................................................................................TACG--AGTAGCCTTTCTTAGAGCATG...........................................25143.0043000000000000000000000000000000000000000000010010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000001021000000000103000000000000000000000000000000000000000000000000000000000000000000000011000100000010011000010000000000400000
...............................................................................................................................................................................................................................................................................................................................TTTACG--AGTAGCCTTTCTTAGAGCA.............................................25134.003400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001004000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000001010300001000040010000000002011200000
..............................................................................................................................................................................................................................................................................................................................TTTTACG--AGTAGCCTTTCTTAGAGCATG...........................................28133.003300000000000000000000000000000000000000100000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000002010030000000000000000000000000000000000001001000000000000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000001000010
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCATGC..........................................27127.00270000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000200010001110012000000000000000000100000000000000000000000000000000000000000000100030000001000000000000000000701000
...............................................................................................................................................................................................................................................................................................................................................TTCTTAGAGCATGCCTTTTACT--ACTGT------.....................27120.00200000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000200000000010100010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000900000
...............................................................................................................................................................................................................................................................................................TTTGA-CCAATTGAATTG-GCGGCGTC.............................................................................25118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000200000002000000000000000000000000000000000000000010000000000000000000003000200100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000400010
..................................................................................................................................................................................................................................................................................................................................................TTAGAGCATGCCTTTTACT--ACTGT------T....................25117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000300000000000010000000000000101000000000000000000000000000000000000000000000000000000000000000000001000020000000000000000000000100600000
................................................................................................................................................................................................................................................................................................................................................TCTTAGAGCATGCCTTTTACT--ACTGT------.....................26114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100030000100001000000000000300400000
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........................................................................................................................................................................................................................................................................................................................TCTATGTTTTACG--AGTAGCCTTTC.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................CTGAGGATGAGGAA---------TAGGA.........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................................................................................TGAATTG-GCGGCGTCTATGTTTTA....................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AGCCTTTCTTAGAGCATGCCTTTTA....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GCGGCCAGGTAGAGACAG-CGGAAGC......................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CTGAGGATGAGGAA---------TAGG..........................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................C------AGCATCACCAA---GCG---CCA---------------------G...............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...................................AC------AGCATCACCAA---GCG---CCA---------------------................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AATTGAATTG-GCGGCGTCTATG.........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................CA---------------------GCGGCCAGGTAGAGAC................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CAATTGAATTG-GCGGCGTCTATGTT.......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGCCGATTCC------------CAC------AGCATCACCAA---GC............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................CCA---------------------GCGGCCAGGTAGAGACAG-CGGA.........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................TTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAA.........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AA---GCG---CCA---------------------GCGGCCAGGTAGAGACAA-TC...........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TTGAATTG-GCGGCGTCTATGTTTTAC...................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ACTAGCACTGAGGATGAGGAA---------TAG...........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GACAG-CGGAAGCCATGAGGAT.............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................CA---------------------GCGGCCAGGTAGAGACAG-CGGAA........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CACGCATTTGA-CCAATTGAAT........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................AATTGAATTG-GCGGCGTCTATGTTTTAC...................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ATTGAATTG-GCGGCGTCTATGTT.......................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................A---------------------GCGGCCAGGTAGAGACAG-CGGAA........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CCTTTTACT--ACTGT------TAAT---GTAGCTTC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................ATTACTAGCACTGAGGATGAG..........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CA---------------------GCGGCCAGGTAGAGACAG-C............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................AGCACTGAGGATGAGGAA---------..............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTCTTAGAGCATGCCTTTTACT--A...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CTTTCTTAGAGCATGCCTT.......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AGCACTGAGGATGAGGAA---------TAGGAA........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................CTAGCACTGAGGATGAGGAA---------TAGGAA........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TTAGAGCATGCCTTTTACT--ACTGT------TA...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................GATGAGGAA---------TAGGAAACTTGTTTAA--------------------------------------........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTTTACG--AGTAGCCTTTCTTAG.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................TACTAGCACTGAGGATGAGGAA---------T.............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGAGCAA............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................TAAAATACAT--ATTTGTTCTTGTTTTT-...........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TATGTTTTACG--AGTAGCCTT.......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TTTACG--AGTAGCCTTTCTTAGAGCATGCC.........................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................ACAG-CGGAAGCCATGAGGATTACT.........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................TGTATAAAATACAT--ATTTGTG.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TGAGGAA---------TAGGAAACTTGTTTAA--------------------------------------TTT.....................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................AGAGACAG-CGGAAGCCATGA.................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TGTTTTACG--AGTAGCCTTTCTTAGAG...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................TT-CC-----CG--------------------CACGCATTTGA-CCAATTGAA.........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGAGGATGAGGAA---------TAGGAAAT......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ATTTGA-CCAATTGAATTG-GCGGCG...............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CCAA---GCG---CCA---------------------GCGGCCAGGTAGAGAC................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GCCTTTCTTAGAGCATGCCTTTTACT--A...............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGCCAACGCCTACGCCGATTCC------------CAC------GGTCTCACCTA---GCG---CCA---------------------GCGGCCAGGCACAGACAG-CGGAAGCCATCAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAC---------------------------------------TTT--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................GCGTCTATGTTTTACG--AGTAGCCTTTCT....................................................28113.001300000013
.................ATTCC------------CAC------GGTCTCACCTA---GCG---CCA---------------------GC..............................................................................................................................................................................................................................................................................................................2711.0010000100
.............................................................................................AGGCACAGACAG-CGGAAGCCATCAGG...............................................................................................................................................................................................................................................................................2611.0010000100
.................................................................................................................................................................................................................................................................................................................................TACG--AGTAGCCTTTCTTAGAGCATGCCT........................................2811.0011000000
...........................................................................................................................ACTAGCACTGAGGATGAGGAA---------..............................................................................................................................................................................................................................................2111.0010000100
....................................................................................................................................................................................................................................................................................................................................G--AGTAGCCTTTCTTAGAGCATGCCT........................................2511.0010000010
........................................................................................................................................................................................................................................................................................................ATTGAATTG-GCGGCGTCTATGTTTTAC...................................................................2711.0010000100
......................................................................................................................GGATTACTAGCACTGAGGATGAGGA........................................................................................................................................................................................................................................................2511.0011000000
..............................................CTCACCTA---GCG---CCA---------------------GCGGCCAG........................................................................................................................................................................................................................................................................................................2211.0010000100
....................................................................................................GACAG-CGGAAGCCATCAGG...............................................................................................................................................................................................................................................................................1911.0010100000
..................................................................................................CAGACAG-CGGAAGCCATCAGGAT.............................................................................................................................................................................................................................................................................2311.0010000100
.......................................................................................................................................................................................................................................................................................................AATTGAATTG-GCGGCGTC.............................................................................1811.0010000010
.................................................................................................................................................................................................................................................................................................................................................................TACT--ACTGT------TAAT---GTAGCTTCAT....2311.0011000000
................................................CACCTA---GCG---CCA---------------------GCGGCCA.........................................................................................................................................................................................................................................................................................................1911.0011000000
.......................................................................................................................GATTACTAGCACTGAGGATGAGG.........................................................................................................................................................................................................................................................2311.0010001000
.................................................................................................................CATCAGGATTACTAGCACT...................................................................................................................................................................................................................................................................1911.0010000100
................................................................................................CACAGACAG-CGGAAGCCATC..................................................................................................................................................................................................................................................................................2011.0010000010
...........................................................................................................................ACTAGCACTGAGGATGAGGA........................................................................................................................................................................................................................................................2011.0010000100
.....................................................................................................ACAG-CGGAAGCCATCAGGA..............................................................................................................................................................................................................................................................................1911.0010000100
droYak3
CGCCAACGCCTACGCCGATTCC------------CAC------GGCCTCACCTA---GCG---CCA---------------------GCGGCCAGGTACAGACAG-CGGAAGCCATGAGGATTACTAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTT-CC-----CG--------------------CACGCATTTGA-CCAATTGAATTG-GCTGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................GTACAGACAG-CGGAAGCCATGA.................................................................................................................................................................................................................................................................................2212.00200000020000
...........................................................................................................................ACTAGCACTGAGGATGAGGAA---------..............................................................................................................................................................................................................................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................................TTACG--AGTAGCCTTTCTTAGA................................................2111.00100100000000
.................................................................................................ACAGACAG-CGGAAGCCATGA.................................................................................................................................................................................................................................................................................2011.00100000010000
...................................................CTA---GCG---CCA---------------------GCGGCCAGGTACAGAC................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................TGTTTTT-CC-----CG--------------------CACGCATTTGA-CC................................................................................................2411.00100100000000
...................................................................................................AGACAG-CGGAAGCCATGAG................................................................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................................CACTGAGGATGAGGAA---------TAGGA.........................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................................................TTACTAGCACTGAGGATGAGGAA---------TA............................................................................................................................................................................................................................................2511.00100000010000
...................................AC------GGCCTCACCTA---GCG---CCA---------------------GCGGC...........................................................................................................................................................................................................................................................................................................2411.00101000000000
..........................................................................................................................TACTAGCACTGAGGATGAGGAA---------TAGGA.........................................................................................................................................................................................................................................2711.00100000010000
........................................................................................................................ATTACTAGCACTGAGGATGAG..........................................................................................................................................................................................................................................................2111.00100000010000
................................................CACCTA---GCG---CCA---------------------GCGGCCAGGTAC....................................................................................................................................................................................................................................................................................................2411.00101000000000
........................................................................................................................ATTACTAGCACTGAGGATGA...........................................................................................................................................................................................................................................................2011.00100000010000
droEug1
CGCCAACGCCCACGCCGATTCC------------GAC------GGCATCCCCCA---GCG---CCA---------------------GCGGCCAAGTTCAGACAG-CGGAAGCCATGAGAGTTAACAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------ATT--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----TA--------------------TACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotal
No Reads
droBia1
CGCCCACTCCCACGCCGGTGCC------------CAC------GGCTTCGCCCA---GCG---CCA---------------------GTGGTCAGGTTCAGCCAG-CGGAAGCCATGAGAGTAAACAGCAATGAGGACGAGGAA---------TAGGAAACTTGTTTGA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----CA-----------------C-AAACGCATTCGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTC-TAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotal
No Reads
droTak1
CGCCGACGCCCACGCCGATTCC------------CAC------G---------------------------------------------------GTCCAGACAG-CGGAAGCCATGAGAGTAACGAGCAACGAGGATGAGGAA---------TAGAAAACTTGTTTAA---------------------------------------TTT--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----CA------AACACCC---CAAAAACGCATTTGA-CCAATTGAATTG-GCGGCGTCTATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotal
No Reads
droEle1
CGCCAACGCCCACGCCGATTCC------------CAC------GGCTTCACCTA---T------------------------------TGGCCAAGTTCAGACAC-CGGAAGCCATGAGAGTTAACAGCACTGAGGATGAGGAATGA----A-TAGGAAACTTGTTTAA--------------------------------------CTTT-TTT---TTGTATAAAATACAT--ATTTGTTCT-GTTTTTGCCCCCCCCA--------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTGTGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotal
No Reads
droRho1
CGCCAACGCCCACGCCGGTTCC------------CACGGCCACGGCTTCACCCA------------------------------------GCCAGGTTCAGACAC-CGGAAGCCATGAGAGTTAACAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTT-TTT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----C---------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTGTGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGCTTCATTTGTSizeHit CountTotal NormTotal
No Reads
droFic1
CGCCAACGCCGACGCCGATTCC------------CACGGTCACGGCTTCACCGA---GCC---CCG---------------------GCGGCCAAGTTCAGACAG-CGGAAGCCATGAGAGTTAACAGCACTGAGGATGAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TT---TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CC-----C---------------------CACGCATTTGA-CCAATTGAATTG-GCGGCGTCTACGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACT--ACTGT------TAAT---GTAGATCCATTTGTSizeHit CountTotal NormTotal
No Reads
droKik1
CGCCCACGCCCACGCCAACGCCCACTCCGCTTCCGTTGGCCACGGCATCGCCTA---GCC---CCGCCA------------------C---------CCAGACAG-CGGTAGCCATGAGAGTTAACAGCACTGAGGATGAGGAATCAGGATGTTAGGAAACTTGTTTAA-------------------TATATATATTTCTC-----CTTT-TTT-TTGTGTATAAAATACATATATTTGTTCTTGTTTTT-CC-----CCCGCGCACA---------C-ACACGCATTTGT-CCAATTGAATTG-GCGGCGTCTGTGCTATACGAGAGTAGCCTTTCTAATAGCATGCCTTTTACT--ACTGTAGCCTGTAAT---GTAGCTACATTTGTSizeHit CountTotal NormTotal
No Reads
droAna3
CGCCAACGCCCACGCCCATACC------------GGCGGAGACGGCTCCGAGCA---GCG---CCGGCAGCAGCAGCAGCAACAGCAGCAGCCAAGTTCAGACAG-CGGAAGCCATGAGAGTTAACAGCACTGAGGACAAGGAA---------TAGGAAACTTGTTTAA---------------------------------------TTA--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTTTTCCCC--CC--------------------TGCGCATTTGT-CCAATTGAATTGGGCGGCGATCATGTTTTACG--AGTAGCCTTTCTTAGAGCATGCCTTTTACTTTATTGT------TAAT---GTAGCTACATTTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................AGCCAAGTTCAGACAG-CGG..........................................................................................................................................................................................................................................................................................1911.001000010
..................................GGCGGAGACGGCTCCGAGCA---GCG---CCGGC...................................................................................................................................................................................................................................................................................................................................2811.001010000
....................CC------------GGCGGAGACGGCTCCGAGC..................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................CTTAGAGCATGCCTTTTACTTTATTGT------C....................2811.001010000
........................................................................................................................................................................................................................................................................................................................................GTAGCCTTTCTTAGAGCATGCCTT.......................................2411.001000001
...................................................................................................AGACAG-CGGAAGCCATGAG................................................................................................................................................................................................................................................................................1911.001001000
..................................................................................................CAGACAG-CGGAAGCCATGAGA...............................................................................................................................................................................................................................................................................2111.001000010
.................................................................................................................CATGAGAGTTAACAGCACTGAGGAC.............................................................................................................................................................................................................................................................2511.001100000
.............................................................................AGCAACAGCAGCAGCCAAGTTCAGACAG-.............................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................CAAGTTCAGACAG-CGGAAGCCATGAG................................................................................................................................................................................................................................................................................2611.001000010
.....................C------------GGCGGAGACGGCTCCGAGC..................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................GTTAACAGCACTGAGGAC.............................................................................................................................................................................................................................................................1811.001010000
....AACGCCCACGCCCATACC------------GGC..................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................TTTCCCC--CC--------------------TGCGCATTT.....................................................................................................1811.001010000
...............................................CCGAGCA---GCG---CCGGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................................................................GAGGACAAGGAA---------TAGGAAACT.....................................................................................................................................................................................................................................2111.001000001
..........................................................CG---CCGGCAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................1920.501010000
droBip1
CGCCAACGCCCACGCCCATACC------------GGCGGAGGCGGGCTCGAGCA---GCGTAGCCA---------------------GCAGCCAAGTTCAGACAG-CGGAAGCCATGAGAGTTAACAGCACTGAGGACAAGGAA---------TAGGAGACTTGTTTAA---------------------------------------TTA--TT---TTGTATAAAATACAT--ATTTGTTCTTGTTTTC-CCCTCCCCA------AACCCCCCCCTGAATGCGCATTCGT-CCAATTGAATTGGGCGGCGATGATGTTTTACG--AGTAGCCTTGATTAGAGCATGCCTTTTACT--ATTGT------TAAT---GTAGCTACATTTGTSizeHit CountTotal NormTotal
No Reads
dp5
CGCCGACACCCACGCCGATACC------------GAC------AGCCTCGCCCA---GCG---CCAGCGC---------CAGCAGCAGCAGCCAGGCTCGGACAA-CGGAGGCCACGAAGGTGGATGCGGATGAGGATGTGGAATAAGGAGA-TTGGAAGCTTGTTCAC---------------------------------------CTT-TTTTTGTTGTATAAAATACATATATTTGTTCTTGTTTTC-CC-----CC-----------------CAAGACGCACTCGGTCCAATTGAATTG-GCGGCGTTTATGTTTTACA--AGTAGCCTT-CATAGAGCATGCCT-TTACT--ACTGT------TAATATTATAGCTACATTTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................T-CATAGAGCATGCCT-TTACT--ACTGT------.....................2513.0030000000300
...........................................AGCCTCGCCCA---GCG---CCAGCGC---------CA......................................................................................................................................................................................................................................................................................................................2312.0020001010000
...............................................................................................................................................................................................................................................................................................CTCGGTCCAATTGAATTG-GCGGCGTTT............................................................................2711.0010100000000
..............................................................................................................................................AATAAGGAGA-TTGGAAGC......................................................................................................................................................................................................................................1811.0010100000000
.........................................................................................................................................................................................................................................................................................................TTGAATTG-GCGGCGTTTATG.........................................................................2011.0010000010000
.............................................................................................................................................................................................................................................................................................................ATTG-GCGGCGTTTATGTTTTACA--AGT.............................................................2611.0010010000000
.............................................................................................................................................GAATAAGGAGA-TTGGAAGCT.....................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................GATGCGGATGAGGATGTGGA........................................................................................................................................................................................................................................................2011.0010000000001
...........ACGCCGATACC------------GAC------AGCCTCGCCCA---GC............................................................................................................................................................................................................................................................................................................................................2711.0010100000000
................................................................................................................................................................................................................................................................................................................................TTACA--AGTAGCCTT-CATAGAGC..............................................2211.0010100000000
..................................GAC------AGCCTCGCCCA---GCG---CC......................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................GC---------CAGCAGCAGCAGCCAGGCTCGGA.................................................................................................................................................................................................................................................................................................2511.0010100000000
...............................................................................................................................................ATAAGGAGA-TTGGAAGCTTGT..................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................TTACA--AGTAGCCTT-CATAGA................................................2011.0010100000000
......................................................................................................................................GGATGTGGAATAAGGAGA-TT............................................................................................................................................................................................................................................2011.0010000001000
..............................................................................................................................................................................................................................................................................................................TTG-GCGGCGTTTATGTTTTACA--AGTA............................................................2611.0010100000000
..............................................................................................GGCTCGGACAA-CGGAGGC......................................................................................................................................................................................................................................................................................1811.0010100000000
..................................................................................................................................................................................................................................................CTTGTTTTC-CC-----CC-----------------CAAGACGC.........................................................................................................2111.0010010000000
..........................................................................................................................GGATGCGGATGAGGATGT...........................................................................................................................................................................................................................................................1840.2510100000000
droPer2
CGCCAACACCCACGCCGATACC------------GAC------AGCCTCGCCCA---GCG---CCAGC---------------AGCAGCAGCCAGGCTCGGACAA-CGGAGGCCACGAAGGTGGATGCGGATGAGGATGTGGAATAAGGAGA-TTGGAAGCTTGTTCAC---------------------------------------CTT-TTTTTGTTGTATAAAATACATATATTTGTTCTTGTTTTC-CC-----CC-----------------CAAGACGCACTGGGTCCAATTGAATTG-GCAGCGTTTATGTTTTACA--AGTAGCCTT-CATAGAGCATGCCT-TTACT--ACTGT------TAATATTATAGCTACATTTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................GC---------------AGCAGCAGCCAGGCTCGGAC................................................................................................................................................................................................................................................................................................2211.001100000
.......................................................................................................................................GATGTGGAATAAGGAGA-TTGGAAGCT.....................................................................................................................................................................................................................................2611.001000001
....................................................................................................................................................................................................................................................................................................................................................AGAGCATGCCT-TTACT--ACTG............................2011.001010000
..........................................................................................................................GGATGCGGATGAGGATGTG..........................................................................................................................................................................................................................................................1930.331010000
droWil2
CACCAACGCCCACTCCGATACC------------AAC------TACTCCACCAATTAGTG---CCA---------------------GCA---AGAAACAGAAATCCGG----------------CGGCAAT---GCAGTGGAA---------GAGTAAATTCATTTTATATGAGAGAACAATTGCAATTCCAATTGTTCTTCACTACTTTCTCC-TTTTAAAGCAAGCACATGATTTTGTTTTTGTTTTG-T----------------------------CACGCAGTTGT-CCAATTGAATTG-GCGGCGTCAATGTTT--CG--TTTAGCTTTTCTG-AAACAAGCCATTTACT--CCAGT------TAAT---AATGCGGCCCTCATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................GGCAAT---GCAGTGGAA---------GAGT..........................................................................................................................................................................................................................................1915.00500500
.......................................................................................................................................................................................................................................................TTTG-T----------------------------CACGCAGTTGT-CCAAT.............................................................................................2111.00100001
.........................................................................................................................................................................................................................................................TG-T----------------------------CACGCAGTTGT-CCAATTGAATT.......................................................................................2511.00100100
............................................................................................................G----------------CGGCAAT---GCAGTGGAA---------GAGT..........................................................................................................................................................................................................................................2111.00100100
....................................................................................................GAAATCCGG----------------CGGCAAT---GCAGTGGAA---------GA............................................................................................................................................................................................................................................2711.00100100
..........................................................................................................................................................................................................................................................................................................TGAATTG-GCGGCGTCAATGTTT--CG--TT..............................................................2611.00101000
.................................................................................................................................AAT---GCAGTGGAA---------GAGTAAA.......................................................................................................................................................................................................................................1911.00100010
....................................................................................................GAAATCCGG----------------CGGCAAT---GCAGT...........................................................................................................................................................................................................................................................2111.00100100
..................................................................................................................................AT---GCAGTGGAA---------GAGTAAATTC....................................................................................................................................................................................................................................2111.00100100
.............................................................................................................................CGGCAAT---GCAGTGGAA---------GAGTA.........................................................................................................................................................................................................................................2111.00100001
..........................................................................................................CGG----------------CGGCAAT---GCAGTGGAA---------GAGT..........................................................................................................................................................................................................................................2311.00100100
............................................................................................................................................................TAAATTCATTTTATATGAGAGAACA..................................................................................................................................................................................................................2511.00101000
...........................................................................................................................................................GTAAATTCATTTTATATGAGAGAACA..................................................................................................................................................................................................................2611.00100010
.......................................................................................................ATCCGG----------------CGGCAAT---GCAGTGGAA---------GAGT..........................................................................................................................................................................................................................................2611.00101000
..............................................................................................GAAACAGAAATCCGG----------------CGGC......................................................................................................................................................................................................................................................................1911.00110000
................................................................CA---------------------GCA---AGAAACAGAAATCCGG----------------C.........................................................................................................................................................................................................................................................................2211.00100010
.............................................................................................................................................................................................................................................................................................................ATTG-GCGGCGTCAATGTTT--CG--TTTAGC..........................................................2711.00101000
..........................................................................................................CGG----------------CGGCAAT---GCAGTGGAA---------GA............................................................................................................................................................................................................................................2111.00100100
..CCAACGCCCACTCCGATACC------------A....................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...............................................................................................................................................................................................................................................................................................................TG-GCGGCGTCAATGTTT--CG--TTTAGC..........................................................2511.00100010
................................................................................................................................................................TTCATTTTATATGAGAGAACAAT................................................................................................................................................................................................................2311.00100010
..............................................................................................................................................................................................................................................................................................AGTTGT-CCAATTGAATTG-GCGG.................................................................................2211.00100010
..............................................................................................................................GGCAAT---GCAGTGGAA---------GAGTA.........................................................................................................................................................................................................................................2011.00100100
..............................................................................................................................................................................................................................................................................................................TTG-GCGGCGTCAATGTTT--CG--T...............................................................2111.00100100
.........................................................................................................CCGG----------------CGGCAAT---GCAGTGG.........................................................................................................................................................................................................................................................1811.00100010
................................................................................................AACAGAAATCCGG----------------CGGCAAT---GCAGT...........................................................................................................................................................................................................................................................2511.00100100
............................................................................................................................................................................GAGAGAACAATTGCAATTCCAATTGTT................................................................................................................................................................................................2711.00101000
..............................................................................................................................GGCAAT---GCAGTGGAA---------GAGTAAAT......................................................................................................................................................................................................................................2311.00100100
.................................................................................................................................AAT---GCAGTGGAA---------GAGTAAAT......................................................................................................................................................................................................................................2011.00100100
.......................................................................................................ATCCGG----------------CGGCAAT---GCAGTGGAA---------GA............................................................................................................................................................................................................................................2411.00101000
..................................................................................................................................................................................................TTGTTCTTCACTACTTTCTCC-TT.............................................................................................................................................................................2311.00101000
...................................................................................................AGAAATCCGG----------------CGGCAAT---GCAGTGGA........................................................................................................................................................................................................................................................2511.00100010
.......................................................................................................................................................................................................................................................................................................................GTCAATGTTT--CG--TTTAGCT.........................................................1911.00110000
.........................................................................................................CCGG----------------CGGCAAT---GCAGTGGAA---------GAGTAAA.......................................................................................................................................................................................................................................2711.00100100
.................................................................................................................................AAT---GCAGTGGAA---------GAGTAAATTCA...................................................................................................................................................................................................................................2311.00100100
...................................................................................................................................................................................................................................................................................................................................................................CT--CCAGT------TAAT---AATGCGGCCC....2111.00100001
......................................................................................................................................................................................................................................................................................................CAATTGAATTG-GCGGCGT..............................................................................1811.00110000
droVir3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCATTGT-CCAATTGAATTG-GCAGCGTCTGTGTTA---A--TATGGCCTTA-TTAAAACAT----TCAACT--ACT--------TATT---ATAGCTACTTTTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................AATTGAATTG-GCAGCGTCTGT..........................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CCAATTGAATTG-GCAGCGTCTGTGT........................................................................2511.001000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CGCCATTGT-CCAATTGAATTG-GCAGCGT..............................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................ATTGT-CCAATTGAATTG-GCA..................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
CACCGACAGCAACACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CACCGACACCCACGCCGATACC------------TTC------AGCTCCAACTA---GTG---ACA---------------------GTGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:40 AM