ID:

dsi_7670

 Coordinate:

3l:7599561-7599710 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.7 -17.0 -17.0 -16.8

Flybase annnotation

CDS [3l_7598708_7599514_-]; five_prime_UTR [3l_7599515_7599597_-]; exon [3l_7598213_7599597_-]

No Repeatable elements found

mature
  1. 2l:22456814-22456829 -
  2. 2l:23079448-23079463 -
  3. 2r:289747-289762 -
  4. 2r:1033462-1033477 -
  5. 2r:2125385-2125400 -
  6. dsi_7670  3l:7599679-7599694 -
  7. 3l:19453535-19453550 -
  8. 3l:23423834-23423849 -
  9. 3l:23448723-23448738 -
  10. 3r:526316-526331 -
  11. node_101527:1979-1994 -
  12. node_38189:26185-26200 -
  13. node_41226:132-147 -
  14. node_17067:6264-6279 -
  15. node_38562:106-121 -
  16. node_49898:9-24 -
  17. node_25171:16-31 -
  18. node_62121:66-81 -
  19. node_72809:157-172 -
  20. node_89896:133-148 -
star

Sense Strand Reads

-------------------------------------------------------------------------------------------------------------------------------------------------------------------#######################################################################################
CCATCTTCTACGCCTCGGAAAGTATTACCTCCCAGCTGGGCTATCTGCCGGTAAGTTAGAAAAAATACAAGACAAAACAAAACACAATGAAAACTTTCAAATCAGTAGGTTTTAAATCTGAGAACATAGTAAGAAAAAAATCATTTATAGTATGCTTAGAGAAACTTATACCGGTTCGGCAAATCAGAATAATCGTCAGTAGTCCGAAACATTATTCAACAGATAACATTAAATTTTTCGTACAAAATGT
**************************************************..............((....(((..............(((......((.((((.(((((((((...((((((..((((.((.(((........))).)).)))))))))))))))))))...)))).))....)))........))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............CGGAAAGTATTACCTCCCAGCTGGGCTA............................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
CCATCTTCTACGCCTCGGAAAGT................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................ATCAGAATAATCGTCAGTAGT............................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........GCCTCGGTAAGTATTA............................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0
.............................................TGCCGGTAAGTGAGA.............................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 1 0 0
......................................................................................................................TTATAACATAGTAAGCAAAAAA.............................................................................................................. 22 3 9 0.11 1 0 0 0 0 1 0
............CCTCGGTAAGTATTA............................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 1 0
...........................................GCTGCCGGGAAGCTAGAAAA........................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 1
..............................................GCCGGTAAGCTAGAGA............................................................................................................................................................................................ 16 2 17 0.06 1 0 0 0 0 0 1
..........................................................................................AAACTGTCAAATCAGTC............................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1
.................................................................TACCAGACAAAACAAAA........................................................................................................................................................................ 17 1 20 0.05 1 0 0 0 1 0 0
..................................................................ACAAGACAAAACAAAA........................................................................................................................................................................ 16 0 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GGTAGAAGATGCGGAGCCTTTCATAATGGAGGGTCGACCCGATAGACGGCCATTCAATCTTTTTTATGTTCTGTTTTGTTTTGTGTTACTTTTGAAAGTTTAGTCATCCAAAATTTAGACTCTTGTATCATTCTTTTTTTAGTAAATATCATACGAATCTCTTTGAATATGGCCAAGCCGTTTAGTCTTATTAGCAGTCATCAGGCTTTGTAATAAGTTGTCTATTGTAATTTAAAAAGCATGTTTTACA
**************************************************..............((....(((..............(((......((.((((.(((((((((...((((((..((((.((.(((........))).)).)))))))))))))))))))...)))).))....)))........))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................................................................................AATATGGCCAAGCCGTTTAGT................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............GGGGACTTTCTTAATGGAGGGT........................................................................................................................................................................................................................ 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................ATGGCCCAGCCGCTTAGCC............................................................... 19 3 10 0.50 5 5 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTTTTTAAGAAGTTGTCTGTTG....................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0
.............................AGGGTCGACTCGATAGGGGG......................................................................................................................................................................................................... 20 3 4 0.50 2 1 1 0 0 0 0 0 0 0
.............................AGGGTCGACTCGATA.............................................................................................................................................................................................................. 15 1 20 0.40 8 3 3 0 0 2 0 0 0 0
............................GACGGTCGACTCGATTGACGG......................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0
.............................ACGGTCGACTCGATTGACGG......................................................................................................................................................................................................... 20 3 10 0.20 2 0 0 0 0 0 0 0 2 0
.............................AGGGTCGACTCGATAGTGGG......................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TTTTTCTAGCAAATATCATA................................................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................AGAAGTTGTCGATTGTAA.................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0
..............................................................................TTTTCTGTTACTTCTGCAAGT....................................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAGTCATCGGGCTTT......................................... 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAAGTTTTCTGTTGTAATCT................. 20 3 19 0.11 2 2 0 0 0 0 0 0 0 0
...AGGAGATGCGGATCC........................................................................................................................................................................................................................................ 15 2 20 0.10 2 0 0 0 0 0 0 2 0 0
............................GAGGGTCGACTCGATA.............................................................................................................................................................................................................. 16 1 12 0.08 1 0 0 0 0 1 0 0 0 0
.......................TGATGGAGGCTCGACCC.................................................................................................................................................................................................................. 17 2 12 0.08 1 0 0 0 0 0 0 1 0 0
..........................................................CGCTCTTATGTTCTGTTTTGT........................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 1 0 0 0 0
............................GAGGGTCGACTCGATAT............................................................................................................................................................................................................. 17 2 19 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................GTTCTGTTTTGTTTT........................................................................................................................................................................ 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................TATGTTCTGTTTTGTT.......................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0
...........................AGAGGGTCGACTCGATAG............................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................................TGTTCTGTTTTGTTTT........................................................................................................................................................................ 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0
...........................................................TTATTTATGTCCTGTGTTGTT.......................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................TATGTTCTGTTTTGTTTT........................................................................................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................ATGGCCCAGCCGCTTAGC................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................CTGTTTTGTTTAGTGT.................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:26 AM