ID:

dsi_7668

 Coordinate:

3l:11832051-11832200 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.7 -24.4 -24.4

Flybase annnotation

five_prime_UTR [3l_11831900_11832013_+]; CDS [3l_11832014_11832050_+]; exon [3l_11831900_11832050_+]; intron [3l_11832051_11833167_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCCTCCACCGCCATGGACGCCCATTCGCGTTTCGCGCCGAGATTACCAGGTAAGTCCGCCGGCCGATCGGCCAAGTCATGCTTTTCGATTCGAATATATCTAGTTTTGATCTTTGGTTTTGTAACTGCTTAGCATTGCCATTGTCCAGTGATTTGCCTTATTTGAGCGTTCAGAAATAGTTCCCAAATACTAACTACACACTCTAATTAAAGACTTAATTGTAAAAGAATTATGTTTGATTGTCTAAAT
**************************************************(((((((.((.((.((((.(((...((...((..(((((.(((((...(((.......))).)))))..))).))..))...))...))))))).)).)))))))))....(((((....)))))..((((........)))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
........................................................................................................TTTTGATCTTTGGTTTTGTAAC............................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................AGTTTTGATCTTTGG..................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0
.........CGCCATGGACGCCCATTCGC............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
...................GCCCATTCGCGTTTCGCGCCGAGAT.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0
...................................................................................................................................AGCATTGCGATTGTCC....................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0
...............................TTCGCGCCGGGATCACCA......................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
..............................................................................................................TCTTTGGTTTTCTATCTGCTTG...................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0
................................TCGCGCCGGGATCACCA......................................................................................................................................................................................................... 17 2 16 0.19 3 3 0 0 0 0 0
.................................................................................................................................................................................................................AAAGAGTTAATTGTAAAA....................... 18 1 8 0.13 1 0 0 0 0 1 0
.......................................................TCCGCCGGCCGATCCGA.................................................................................................................................................................................. 17 2 16 0.06 1 1 0 0 0 0 0
.......................................................................................................GTTTGGATCTTTGGT.................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0
..................................................................................TTTTCGGTTCGAATA......................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................TTTTGTGACTGCATAGC.................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GCGGAGGTGGCGGTACCTGCGGGTAAGCGCAAAGCGCGGCTCTAATGGTCCATTCAGGCGGCCGGCTAGCCGGTTCAGTACGAAAAGCTAAGCTTATATAGATCAAAACTAGAAACCAAAACATTGACGAATCGTAACGGTAACAGGTCACTAAACGGAATAAACTCGCAAGTCTTTATCAAGGGTTTATGATTGATGTGTGAGATTAATTTCTGAATTAACATTTTCTTAATACAAACTAACAGATTTA
**************************************************(((((((.((.((.((((.(((...((...((..(((((.(((((...(((.......))).)))))..))).))..))...))...))))))).)).)))))))))....(((((....)))))..((((........)))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
........................................................................GTTCAGTACGAAAAGCTGAGC............................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0
..................................................................................................................AGCAAAACATTGAAGTATCGT................................................................................................................... 21 3 5 0.20 1 0 1 0 0
......................................................................................................................................................CTAAACGGAAAAAACTC................................................................................... 17 1 7 0.14 1 0 1 0 0
...................................................AGTCAGGGGGCCGGGTAGC.................................................................................................................................................................................... 19 3 11 0.09 1 0 1 0 0
.......................................................AGGCAGCGGGCTAGCCG.................................................................................................................................................................................. 17 2 14 0.07 1 0 0 1 0
...................................................ATTCAGGGGGCCGGTCAGC.................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0
.....................................................................................................................................................................................AGGGTTTAGGATTGGTG.................................................... 17 2 20 0.05 1 0 1 0 0
...............................................................................................................................................................................................AATGATGTGTGGGATT........................................... 16 2 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:38 AM