dsi_7665

three_prime_UTR [x_15299934_15300070_-]; CDS [x_15300071_15300115_-]; exon [x_15299934_15300115_-]; Antisense to exon [x_15300206_15300440_+]; Antisense to five_prime_UTR [x_15300206_15300400_+]; intron [x_15300116_15301148_-]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GATAGCTATCGCACCCCGTTATCGATCAACGATTGCACTACAGTTGCGTTTGCACAAATCGATTTTCGAAATATACTATAGACACACTGCAGTTATCGATATATCGCACTCAAAAACATTCGTTACAAATGTATTTTTTTTAGAGCTATTAAAAATAATAATAATATATTAACGTTTTACCCTCTTGTATTTGTATTTAGATTGTCCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAATTACA ************************************************.........((((..((((.....(((.(((.....))).)))..))))...))))....((((.(((..(((((...(((((((.((.(((.............))).)).))))))))))))...........))).)))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis
.....................................................................................................................................................................................................CAGATTGTCCAAAAACTTGGAGGAGA...........................	26	1	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................ACTTGGAGGAGACGGCAAC....................	19	0	1	1.00	1	1	0	0	0
..............CCCGTTATCGATCAACGATTG.......................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................TATATATACATTGTCCAAAAACT....................................	23	3	6	0.17	1	0	0	1	0
.........................................................................................................................................................................................................................AGGAGACTGCAACTGGACTA.............	20	3	7	0.14	1	0	0	0	1

##############################################################################################################-------------------------------------------------------------------------------------------------------------------------------------------- CTATCGATAGCGTGGGGCAATAGCTAGTTGCTAACGTGATGTCAACGCAAACGTGTTTAGCTAAAAGCTTTATATGATATCTGTGTGACGTCAATAGCTATATAGCGTGAGTTTTTGTAAGCAATGTTTACATAAAAAAAATCTCGATAATTTTTATTATTATTATATAATTGCAAAATGGGAGAACATAAACATAAATCTAACAGGTTTTTGAACCTCCTCTGCCGTTGGCTTGATGTCATATTAATGT ************************************************.........((((..((((.....(((.(((.....))).)))..))))...))))....((((.(((..(((((...(((((((.((.(((.............))).)).))))))))))))...........))).)))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	M023 head	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
..................................CGTGATGTCAACGCAAACGTGTT.................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0
CTATCGATAGCGTGGGGC........................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................TCCTCTGCCGTTGGCTTGCTGT...........	22	1	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................CCGTTGCCTTGATGTCATAT......	20	1	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................TAGCGTGAGTTTTTGTAAGC................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTCTGCCGTTGGCTTGAT.............	18	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................GAGTTTTTGTAAGCAATGTTT.........................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................AGCGTGAGTTTTTGTAAGCAA..............................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................AATCTAACAGGTTTT.......................................	15	0	2	0.50	1	0	0	0	0	1	0	0
.....................................................................................................................................AAAAAAAATCTGGATCAT...................................................................................................	18	2	12	0.08	1	0	0	0	0	0	1	0
......................................................................................................TATCGTGAGTTTTTGT....................................................................................................................................	16	1	13	0.08	1	0	0	0	1	0	0	0
.......................................................................................................................................AAAAGATCTCGACAATTT.................................................................................................	18	2	15	0.07	1	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................CCTCTGCCCTTAGCTTG...............	17	2	18	0.06	1	0	0	0	0	0	1	0
...............................................................................TCTGTGTCACGTCAATTGT........................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:15300066-15300315 -	dsi_7665	GAT--AGCTATCGCACCCCGTTATCGATC------AACG-----AT-----TGCAC------TA-CAGTTGCGT-------------TTGCACAAATCGATTTTCGAAATATACTATAGACACACTGCA------------------------------------------------------GTTATCGATATATCGCACTCAAA-----------------------------------------------------------AA------------C---------------------------------------------------ATTCGT----------TACAAA--TGT-----------------------------------------------------------------------------AT-------------------------------TTTTTTTAGAGCTATTAAAAATAA------------------------------------------TAAT---------------------------------------------------------------------------------------AATATATTA------------------------------------------------AC--GTTTTACCCTCTTGT-ATT-T-GTATTTAGATTGTCCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAATTAC--A-----
droSec2	scaffold_17:1262-1517 -		GAT--AGTTATCGCACCCCGTTATCGATC------AACG------------AGGAC------TA-CGGTTGCGT-------------TTGCACAAATCGATTTCCGAAATATACTACAGACACACTGC--------------------------------------------------------ATATCGATATATCGCACTCATA-----------------------------------------------------------AA------------C---------------------------------------------------ATTCGT----------TACAAA--TGA-----------------------------------------------------------------------------AT----------TTTT--ATTC---------TTTAATTTTAGAGCTATTAAAAATAA------------------------------------------TAAT---------------------------------------------------------------------------------------AATATTTTA------------------------------------------------AC--GTTTTACCCTCTTGT-AAT-T-GTATTTAGATTGTTCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAATTAC--A-----
dm3	chrX:16180118-16180357 -		GAT--AGCTATCGCACCCCGTTATCGATC------AACG------------AGCAC------TA-CGGTTGCGT-------------TTGTACAAATCGATTTCCGAAATGTAATACAGACACACTGCA------------------------------------------------------CCTATCGATATATCGCACTCAAG-----------------------------------------------------------AA------------A---------------------------------------------------ATTCGT----------TA---------------------------------------------------------------------------------------------------------TTC---------TTTAGTTTTAGAGCTATTAAATATAT-------------------------------------------------------------------------------------------------------------------------------------TATCTTTTA------------------------------------------------AC--ATTTTACCCTTTTGT-ATT-T-GTATTTAGATTGTTCAAAAACTTGGTGGAGACGGCAACCGAACTACAGTATAATTAC--A-----
droEre2	scaffold_4690:10907217-10907483 +		GAT--AGTTATCGCACCCAG-TATCGATC------AACG------------TGCAC------TA-TGGTTGTGT-------------TTGCAGAAATCGATTTTCGAAATGTACTACAGACACATTGCCGTGC--------------------------------------------------GTTATCGATATATCGCATTAAAG-----------------------------------------------------------AA----------------------------------------------------------------ATGCGT----------TAAAAAAAACAATTT---------------------------------------------------------------------------------------T----TTT---------TTTAAATTT-GAACT----------------------------------------------------------------------ATATTTACTTGCAGATTAAAC-------------------------------------C----------AAAA-TGTCTTTTA------------------------------------------------AC--GCTTTAC-CTCTTGT-ATT-T---ATGCAGATTGTTCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAATTAC--A-----
droYak3	X:10325934-10326145 -		GAT--AGTTATCGCACCCAGTTATCGATC------AACA------------TGCAC------TA-TGGTTGTGT-------------TTGCACAAATCGATTTTCGTAATATTCTACAGACACACTGCAATGC--------------------------------------------------GTTATCGATACATCGCATTCAAA------------------------------------------------------------T------------T---------------------------------------------------ATTTGT----------T--------------------------------------------------------------------------------------------------------------------------TTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------GTTA------------------------------------------------AC--GTTTTACCCTTTTGT-ATT-T---TTTTAGATTGTTCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTGTAATTCC--A-----
droEug1	scf7180000409008:1429558-1429876 +		A---------TCGCACTCAGTTATCGATT------AA-G------------CTCAC-----ATA-TGGTTGTGT-------------TTGA-AAAATCGATTTTTA-----TTTT----ACACACTAACATCC--------------------------------------------------AT--TCGATACTCCAAGCCG-------------------------------------------------------------------------------AAA----------TA-----------------------AATCAACACAACGGCATTATTTCATTTCAAAAATATCACTTTCTTGTTTTTCTAAATAATTAATAATGGATTAAATACTAATGTTGTTGAAATATAGTTCTAAATCTT----------------------------------------------------------------------------------------------------------------------------TATTTAATTGCAGATTAATC-------------------------------------C----------AAATTTATTTTCTA------------------------------------------------AC--TTTTTACCCTTTTGCCATT-T---ATTTAGATTGTTCAAAAACTTGGAGGAGATGGCAACCGAACTACTGTATAATT-T--A-----
droBia1	scf7180000302126:826359-826575 +		GG---ACTTATCGCACGGTGCTATCGATT------CA------------------C-----ATA-TGGTTGTGT-------------TGGCGAAAATCGAA-------------------------GCA------------------------------------------------------GCCATCGATATATCGCTTTGAAA-----------------------------------------------------------AA------------G---------------------------------------------------TT---------------A----------TCG------TTT---------------------------------------------------------TCACTGCATTTTCCATACTTTTTTGATAT---------TTTCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------AGGTATTTTCTA------------------------------------------------AT--ATTTAAAACTTTT-T-T---C-CCATTCAGATCGTTCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAGGCAT--T-----
droTak1	scf7180000415289:242272-242483 -		GAA--CG-TATCGCACTTCCCTATCGATT------CCCA------------TTCAC-----ACA-CGGTTGTGT-------------TT--------CGATTC-------------------------G------------------------------------------------------TCTATCGATATATCGCACTACAA-----------------------------------------------------------AA----------------------------------------------------------------CTGCGCCATCT--------------------------------------------------------------------------------------------CATTTGCCATAATTTTT--AAAT---------TTTAAATTA----------A----------------------------------------------------------------------------------------------------------------------------------------ATCTATTTTCTA------------------------------------------------AC--ATTTAACCCCTTTGT-C---T-GCCCTTAGATTGTTCAAAGACTCGGAGGAGACGGCAACCGAACTACAGTATAATTAT--A-----
droEle1	scf7180000491182:101987-102297 +		GCA--ACTTATCGCAACAAGCTATCGATT------AACG------------TTCTC-----ATA-TGC-TATCT-------------T-G-AAAAATCGATTTTCAAATT--------------------------------------------------------------------------ATATCGATATATCGCAATAAAGTATAATACGTTCACACCAAACTGTGATAGAGCGTTTTCTTGTGTCTTGTTTTTGTTAT--T----------------------------------------------------------------------------------------------------GTTTATGGGTAACTAACAATTCGT-------TAATTTTGTAGAAATGT----------------------------------------------------------------------C----------------------------------------------TT---------TAATAAGCATGCGTACTAACAGACTTA-C-------------------------------------C----------AAGA-TTAACTGTA------------------------------------------------AC--GTTCTGCTCTTTT-C-ATT-T---TTTTAGATTGTTCAAAAACTCGGAGGAGACGGAAACCGAACTACAGTATAATTAT--A-----
droRho1	scf7180000778073:16328-16605 +		GCG--ACTTATCGCACCTAGCTATCGATT------CGCG------------TTCAC-----ATA-TGG-CGTGT-------------GGGC-GAAATCGATTATT--ATTATACTCGAGGCACACTAGCGCAC------------------------------GTTTTCA-------TT----GATATCGATGTATCGCAAAAAAA-----------------------------------------------------------------------------------------------------------------------------ATGCCATACCG--------------------------------------------------------------------------------------------TGTTTCCCAAAA-TATA--AAATTATAAATGCGTTATATTT------------------------------------------------------------------------AAGCATATGTACTAACGTATTAA-T-------------------------------------C----------A--------ACCTA------------------------------------------------AC--GTTTTT-CCTTTTGT-ATT-T---ATATAGATTGTTCAAAAACTTGGTGGAGACGGAAACCGAACAACAGTATAATTAT--A-----
droFic1	scf7180000453495:453183-453592 -		GC----------------AGATATCGATA------TACA------------TTCAC-----ATA-T-GTTATGT-------------T-GCAGTAATCGATTAC-ATACAATATTTTGGCCACACTAGTGC----------------------------------TTAAA-------TAGCTACAAATCGATAAACAACCCGC---------------------------CATATTTGGTTTTTTTTAGATATGTTCCTTTAAAAATGTCCTC--TTAT-ATAAAAAGATTAAAATATATAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATGTTGATTCATACCTCTATTAAAATTACTT---------ATACATGTATTCTTGCTAACGAATTAA-TTTTTAAAAAGATCCAGTATTATTTCACTGCCATAATTC----------AAC--GACATTCTTACGTTTTACCTTTTGGCAACATAAAATTATTTAAATGACTTATCTGTAA----CTTTTCTCTTCTGT-ATT-T----ATTAGATTGTTCAAAAACTTGGAGGAGACGGAAACCGAACTACGGTGTAACTTT--A-----
droKik1	scf7180000302696:1019310-1019575 -		GCT--AGTTATCGAATGCAATCAAC-------------TGAACTATCGAAA--CGT------TA-GGGTTGCGT-------------TGAC-GAAGTCGGTTCAC--------------------------------------------CG--------TTTTATTCGATTATTTTTTC----AATTTCCACAAGTGG------------------------------------------------------------------------------------GAAAAGAATAAAA-ACGCAAAATCTATTTTTTTATATCAAGCAACAAA-------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAATGGCTCT---------------------------------------------------------------------------GATTTAGC-------------------------------------C----------AAAA-TATTTACCT------------------------------------------------AT--ACTTTTCTCTTTTCT-ATTTT-CTTTTTAGATTGTCCAAAAACTTGGTGGAGATGGCAACCGAACAACGGTGTAAA-AT--A-----
droAna3	scaffold_13137:1219408-1219615 -		AAG--GCTTAGTGAGGGCAGACATCGGTT------CAAA------------CTATC------------------------------------------GA---TTGAAATATGTTAA--------------------------------------------------------------------------TGAATCGAACGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGCATTCTTCAAAAACATC--ATAT---------TTTTAATTTAAAGTATTTAAAAGAAA---------------------------------------------------------------------------------------------------------------------------------------CTCCTCA-------------------------------------ACATATATATAGC--GCG-TACTTTTCTTT-ATT-T---GTTTAGATTGTGCAAAGACTTGGTGGAGATGGCAACCGAACGACGGTATAATA----------
droBip1	scf7180000392091:3276-3388 -		TCT--TATT-TAGTATATTTAAATAGA-------------------------------------------------------------------------A-------------------------GAA------------------------------------------------------TCATTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT------------------------------------------------AC--CTCGTACTTTTCTTT-ATT-T---GTTTAGATTGTGCAAAAACTTGGTGGAGATGGAAACCGAACGACGGTATAATA----------
dp5	XL_group1e:10418545-10418900 +		CCT--CGAAATGAC------TTATCGATATCAGTCACCTGCGATACGAGAA--TTT---------------------------------CCAGGCACCCCTGGCAGGTCTGCTTTAC--------------------------------TG--------AATCGCTTGAA-------TT----GAAATCGATAGGTCGCGCGG---------------------------TCTGTTT-------------------------------------------AAAAACAGAC-AAAA-ATGTAAATCCTATTACTTTTT-CC--------------------------------------------------------------------------------------------------------------------------AAGA-------------------------TATAAGAGCTATAGCACCCATTTTTGTTAGACATGTAGGTGTGAAATTCTGTAAAAAAAAAAAAAAAAATATATATATATAATTTTATAA----------C-------------------------------------CAATTTTGATA----------ATTG----------------------------------ACGATTTATTTA---TATATCTTT-GT--TTGT-ATA-T-CTTTATAGATTGTTCAAAAACTGGGCGGCGATGGAAACCGGACAACAGTATAATAAAAAT---GG
droPer2	scaffold_69:100353-100698 -		CCT--CGAAATGAC------TTATCGATATCAGTCACCTGCGATACCGGAA--TTT------TA------------------------------------A-----------------GCAGCCCTGGCAGGTGTGCTTTA-------TTG--------AATCGCTTGAA-------TT----GAAATCGATAAGTCGCGCGT----------------------------CTATTT-------------------------------------------AAAAAAAGACAAAAA-ATTTAAATCCTATTTCTTTTT-CC--------------------------------------------------------------------------------------------------------------------------AAGA-------------------------TATAAGAGCTATAGCACCCATTTTTGTTAGACATGTAGGTGTGAAATTCTGTAAAAACAAAAA---------ATATATATAATTTTATAA----------C-------------------------------------CAATTTTGATA----------ATTG----------------------------------ACGATTTATTTA---TATATCTT---TTTTTGT-ATA-T-CTTTATAGATTGTTCAAAAACTGGGCGGCGATGGAAACCGGACAACAGTATAATAAAAAT---GG
droWil2	scf2_1100000004909:6532689-6532882 -		TTGTCGGTTATCG------GCTATCGATA-----------------------GCA------------------A-------------TAGC-GAGAGTGGTACTT--------------------------------------------CT--------TTTTGTAC----------------------------TCGTACTCATA------------------------------------------------------------C---CAGGGATGA-CAAAA----------TA-----------------------AAT----------------------------------------------------------------------------------------------------------------------CAAA---ATC--AAAT---------TTTAAATTT----------A-----------------------------------------------------------------------------------------------------------------------------------------------ATTTT------------------------------------------------TT--GTTTTT-CATTTTGT-T---T-CGTTCTAGATTGTTCAAAAACTTGGAGGTGATGGCAATCGGACAACAGTATAATGTATCCGTAGG
droVir3	scaffold_12472:270123-270348 +	dvi_1041	GAT--AACTTTTGA-TTTTATAATCGAAA------CACG------------TTAGC-----T-GTCACTTGTGTACACCCACCTAATTTGTCAAAAACTAGTTGCAAAAG-------------GCAGCAA-----------TACCAATCCTATATGTATATAAATTAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------------------------------------------------------------------------------------------------------------TAGTCAATTTCGTATTAATA-------------------------------------A----------TA----------------------------------------------------------------ATTATT-ATTTTC---ATT-A-CATTTCAGATTGTTCAAAAGCTTGGTGGGGACGGAAATCGAACAACGGTATAATATTAAAGTATA
droMoj3	scaffold_6308:3210654-3210889 -		AAT--AAATAT-----------ATCGATATGCTTTGCTTGACA-ATCGAAA--CACTCAAGT-GTCAGTGCTGTACAGCCAACTAAATTGTCAAAATCGAATTGCGGCC-------------AACAGCAA-----------TTCAAATGAAAAATATCGTTAGATTCAATAATTATTTC----A--------------------AA------------------------------------------------------------T------------C---------------------------------------------------ATCTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTT------------------------------------------------GT--ATTTTTTTTTTTTAT-ATT-TATATTTCAGATTGTTCAAAAACTTGGTGGCGATGGGAATCGGACAACTGTATAAAATTAAA-----
droGri2	scaffold_15203:4712137-4712193 -		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGTTCAAAGACTCGGCGGAGACGGAAATCGGACAAGGGTATGAAATTAAAA--CA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GAT--AGCTATCGCACCCCGTTATCGATC------AACG-----AT-----TGCAC------TA-CAGTTGCGT-------------TTGCACAAATCGATTTTCGAAATATACTATAGACACACTGCA------------------------------------------------------GTTATCGATATATCGCACTCAAA-----------------------------------------------------------AA------------C---------------------------------------------------ATTCGT----------TACAAA--TGT-----------------------------------------------------------------------------AT-------------------------------TTTTTTTAGAGCTATTAAAAATAA------------------------------------------TAAT---------------------------------------------------------------------------------------AATATATTA------------------------------------------------AC--GTTTTACCCTCTTGT-ATT-T-GTATTTAGATTGTCCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAATTAC--A-----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGAGGAGACGGCAAC...........................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCCGTTATCGATC------AACG-----AT-----TG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GAT--AGTTATCGCACCCCGTTATCGATC------AACG------------AGGAC------TA-CGGTTGCGT-------------TTGCACAAATCGATTTCCGAAATATACTACAGACACACTGC--------------------------------------------------------ATATCGATATATCGCACTCATA-----------------------------------------------------------AA------------C---------------------------------------------------ATTCGT----------TACAAA--TGA-----------------------------------------------------------------------------AT----------TTTT--ATTC---------TTTAATTTTAGAGCTATTAAAAATAA------------------------------------------TAAT---------------------------------------------------------------------------------------AATATTTTA------------------------------------------------AC--GTTTTACCCTCTTGT-AAT-T-GTATTTAGATTGTTCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAATTAC--A-----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GAT--AGCTATCGCACCCCGTTATCGATC------AACG------------AGCAC------TA-CGGTTGCGT-------------TTGTACAAATCGATTTCCGAAATGTAATACAGACACACTGCA------------------------------------------------------CCTATCGATATATCGCACTCAAG-----------------------------------------------------------AA------------A---------------------------------------------------ATTCGT----------TA---------------------------------------------------------------------------------------------------------TTC---------TTTAGTTTTAGAGCTATTAAATATAT-------------------------------------------------------------------------------------------------------------------------------------TATCTTTTA------------------------------------------------AC--ATTTTACCCTTTTGT-ATT-T-GTATTTAGATTGTTCAAAAACTTGGTGGAGACGGCAACCGAACTACAGTATAATTAC--A-----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAAAACTTGGTGGAGACG................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAACTTGGTGGAGACGGCAACCG.........................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAAAAACTTGGTGGAGACGGCA.............................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAACTTGGTGGAGACGGC..............................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAAAAACTTGGTGGAGACGGC..............................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
GAT--AGCTATCGCACCCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TA-CGGTTGCGT-------------TTGTACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AGCAC------TA-CGGTTGCGT-------------TTGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................GATATATCGCACTCAAG-----------------------------------------------------------AA------------A---------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAAAAACTTGGTGGAGAC.................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATCGATC------AACG------------AGCAC------TA-CGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTGGTGGAGACGGCAACCGAAC......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAAAAACTTGGTGGAGACGG...............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGGAGACGGCAACC..........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-ATT-T-GTATTTAGAT.......................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GAT--AGTTATCGCACCCAG-TATCGATC------AACG------------TGCAC------TA-TGGTTGTGT-------------TTGCAGAAATCGATTTTCGAAATGTACTACAGACACATTGCCGTGC--------------------------------------------------GTTATCGATATATCGCATTAAAG-----------------------------------------------------------AA----------------------------------------------------------------ATGCGT----------TAAAAAAAACAATTT---------------------------------------------------------------------------------------T----TTT---------TTTAAATTT-GAACT----------------------------------------------------------------------ATATTTACTTGCAGATTAAAC-------------------------------------C----------AAAA-TGTCTTTTA------------------------------------------------AC--GCTTTAC-CTCTTGT-ATT-T---ATGCAGATTGTTCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAATTAC--A-----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTTGGAGGAGACG................................	18	1	1.00	1	1	0	0	0	0	0	0

droYak3

GAT--AGTTATCGCACCCAGTTATCGATC------AACA------------TGCAC------TA-TGGTTGTGT-------------TTGCACAAATCGATTTTCGTAATATTCTACAGACACACTGCAATGC--------------------------------------------------GTTATCGATACATCGCATTCAAA------------------------------------------------------------T------------T---------------------------------------------------ATTTGT----------T--------------------------------------------------------------------------------------------------------------------------TTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------GTTA------------------------------------------------AC--GTTTTACCCTTTTGT-ATT-T---TTTTAGATTGTTCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTGTAATTCC--A-----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAACTTGGAGGAGACGGC..............................	21	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAACTTGGAGGAGAC.................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACCGAACTACAGTGT..............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

A---------TCGCACTCAGTTATCGATT------AA-G------------CTCAC-----ATA-TGGTTGTGT-------------TTGA-AAAATCGATTTTTA-----TTTT----ACACACTAACATCC--------------------------------------------------AT--TCGATACTCCAAGCCG-------------------------------------------------------------------------------AAA----------TA-----------------------AATCAACACAACGGCATTATTTCATTTCAAAAATATCACTTTCTTGTTTTTCTAAATAATTAATAATGGATTAAATACTAATGTTGTTGAAATATAGTTCTAAATCTT----------------------------------------------------------------------------------------------------------------------------TATTTAATTGCAGATTAATC-------------------------------------C----------AAATTTATTTTCTA------------------------------------------------AC--TTTTTACCCTTTTGCCATT-T---ATTTAGATTGTTCAAAAACTTGGAGGAGATGGCAACCGAACTACTGTATAATT-T--A-----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GG---ACTTATCGCACGGTGCTATCGATT------CA------------------C-----ATA-TGGTTGTGT-------------TGGCGAAAATCGAA-------------------------GCA------------------------------------------------------GCCATCGATATATCGCTTTGAAA-----------------------------------------------------------AA------------G---------------------------------------------------TT---------------A----------TCG------TTT---------------------------------------------------------TCACTGCATTTTCCATACTTTTTTGATAT---------TTTCAAT-----------------------------------------------------------------------------------------------------------------------------------------------------AGGTATTTTCTA------------------------------------------------AT--ATTTAAAACTTTT-T-T---C-CCATTCAGATCGTTCAAAAACTTGGAGGAGACGGCAACCGAACTACAGTATAGGCAT--T-----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAA--CG-TATCGCACTTCCCTATCGATT------CCCA------------TTCAC-----ACA-CGGTTGTGT-------------TT--------CGATTC-------------------------G------------------------------------------------------TCTATCGATATATCGCACTACAA-----------------------------------------------------------AA----------------------------------------------------------------CTGCGCCATCT--------------------------------------------------------------------------------------------CATTTGCCATAATTTTT--AAAT---------TTTAAATTA----------A----------------------------------------------------------------------------------------------------------------------------------------ATCTATTTTCTA------------------------------------------------AC--ATTTAACCCCTTTGT-C---T-GCCCTTAGATTGTTCAAAGACTCGGAGGAGACGGCAACCGAACTACAGTATAATTAT--A-----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCA--ACTTATCGCAACAAGCTATCGATT------AACG------------TTCTC-----ATA-TGC-TATCT-------------T-G-AAAAATCGATTTTCAAATT--------------------------------------------------------------------------ATATCGATATATCGCAATAAAGTATAATACGTTCACACCAAACTGTGATAGAGCGTTTTCTTGTGTCTTGTTTTTGTTAT--T----------------------------------------------------------------------------------------------------GTTTATGGGTAACTAACAATTCGT-------TAATTTTGTAGAAATGT----------------------------------------------------------------------C----------------------------------------------TT---------TAATAAGCATGCGTACTAACAGACTTA-C-------------------------------------C----------AAGA-TTAACTGTA------------------------------------------------AC--GTTCTGCTCTTTT-C-ATT-T---TTTTAGATTGTTCAAAAACTCGGAGGAGACGGAAACCGAACTACAGTATAATTAT--A-----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCG--ACTTATCGCACCTAGCTATCGATT------CGCG------------TTCAC-----ATA-TGG-CGTGT-------------GGGC-GAAATCGATTATT--ATTATACTCGAGGCACACTAGCGCAC------------------------------GTTTTCA-------TT----GATATCGATGTATCGCAAAAAAA-----------------------------------------------------------------------------------------------------------------------------ATGCCATACCG--------------------------------------------------------------------------------------------TGTTTCCCAAAA-TATA--AAATTATAAATGCGTTATATTT------------------------------------------------------------------------AAGCATATGTACTAACGTATTAA-T-------------------------------------C----------A--------ACCTA------------------------------------------------AC--GTTTTT-CCTTTTGT-ATT-T---ATATAGATTGTTCAAAAACTTGGTGGAGACGGAAACCGAACAACAGTATAATTAT--A-----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GC----------------AGATATCGATA------TACA------------TTCAC-----ATA-T-GTTATGT-------------T-GCAGTAATCGATTAC-ATACAATATTTTGGCCACACTAGTGC----------------------------------TTAAA-------TAGCTACAAATCGATAAACAACCCGC---------------------------CATATTTGGTTTTTTTTAGATATGTTCCTTTAAAAATGTCCTC--TTAT-ATAAAAAGATTAAAATATATAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATGTTGATTCATACCTCTATTAAAATTACTT---------ATACATGTATTCTTGCTAACGAATTAA-TTTTTAAAAAGATCCAGTATTATTTCACTGCCATAATTC----------AAC--GACATTCTTACGTTTTACCTTTTGGCAACATAAAATTATTTAAATGACTTATCTGTAA----CTTTTCTCTTCTGT-ATT-T----ATTAGATTGTTCAAAAACTTGGAGGAGACGGAAACCGAACTACGGTGTAACTTT--A-----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCT--AGTTATCGAATGCAATCAAC-------------TGAACTATCGAAA--CGT------TA-GGGTTGCGT-------------TGAC-GAAGTCGGTTCAC--------------------------------------------CG--------TTTTATTCGATTATTTTTTC----AATTTCCACAAGTGG------------------------------------------------------------------------------------GAAAAGAATAAAA-ACGCAAAATCTATTTTTTTATATCAAGCAACAAA-------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAATGGCTCT---------------------------------------------------------------------------GATTTAGC-------------------------------------C----------AAAA-TATTTACCT------------------------------------------------AT--ACTTTTCTCTTTTCT-ATTTT-CTTTTTAGATTGTCCAAAAACTTGGTGGAGATGGCAACCGAACAACGGTGTAAA-AT--A-----	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAG--GCTTAGTGAGGGCAGACATCGGTT------CAAA------------CTATC------------------------------------------GA---TTGAAATATGTTAA--------------------------------------------------------------------------TGAATCGAACGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGCATTCTTCAAAAACATC--ATAT---------TTTTAATTTAAAGTATTTAAAAGAAA---------------------------------------------------------------------------------------------------------------------------------------CTCCTCA-------------------------------------ACATATATATAGC--GCG-TACTTTTCTTT-ATT-T---GTTTAGATTGTGCAAAGACTTGGTGGAGATGGCAACCGAACGACGGTATAATA----------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATGGCAACCGAACGACG..................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGATGGCAACCGAACGAC...................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGACTTGGTGGAGATGGC..............................	22	1	1.00	1	0	1	0	0	0	0

droBip1

TCT--TATT-TAGTATATTTAAATAGA-------------------------------------------------------------------------A-------------------------GAA------------------------------------------------------TCATTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT------------------------------------------------AC--CTCGTACTTTTCTTT-ATT-T---GTTTAGATTGTGCAAAAACTTGGTGGAGATGGAAACCGAACGACGGTATAATA----------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CCT--CGAAATGAC------TTATCGATATCAGTCACCTGCGATACGAGAA--TTT---------------------------------CCAGGCACCCCTGGCAGGTCTGCTTTAC--------------------------------TG--------AATCGCTTGAA-------TT----GAAATCGATAGGTCGCGCGG---------------------------TCTGTTT-------------------------------------------AAAAACAGAC-AAAA-ATGTAAATCCTATTACTTTTT-CC--------------------------------------------------------------------------------------------------------------------------AAGA-------------------------TATAAGAGCTATAGCACCCATTTTTGTTAGACATGTAGGTGTGAAATTCTGTAAAAAAAAAAAAAAAAATATATATATATAATTTTATAA----------C-------------------------------------CAATTTTGATA----------ATTG----------------------------------ACGATTTATTTA---TATATCTTT-GT--TTGT-ATA-T-CTTTATAGATTGTTCAAAAACTGGGCGGCGATGGAAACCGGACAACAGTATAATAAAAAT---GG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAACTGGGCGGCGATGGA..............................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAAAAACTGGGCGGC....................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTGGGCGGCGATGGAA.............................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGATTGTTCAAAAACTGGGC.......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAAAAACTGGGCGGC....................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAT........................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

CCT--CGAAATGAC------TTATCGATATCAGTCACCTGCGATACCGGAA--TTT------TA------------------------------------A-----------------GCAGCCCTGGCAGGTGTGCTTTA-------TTG--------AATCGCTTGAA-------TT----GAAATCGATAAGTCGCGCGT----------------------------CTATTT-------------------------------------------AAAAAAAGACAAAAA-ATTTAAATCCTATTTCTTTTT-CC--------------------------------------------------------------------------------------------------------------------------AAGA-------------------------TATAAGAGCTATAGCACCCATTTTTGTTAGACATGTAGGTGTGAAATTCTGTAAAAACAAAAA---------ATATATATAATTTTATAA----------C-------------------------------------CAATTTTGATA----------ATTG----------------------------------ACGATTTATTTA---TATATCTT---TTTTTGT-ATA-T-CTTTATAGATTGTTCAAAAACTGGGCGGCGATGGAAACCGGACAACAGTATAATAAAAAT---GG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTCAAAAACTGGGC.......................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTGGGCGGCGATGGAAA............................	21	1	1.00	1	0	1	0	0	0	0

droWil2

TTGTCGGTTATCG------GCTATCGATA-----------------------GCA------------------A-------------TAGC-GAGAGTGGTACTT--------------------------------------------CT--------TTTTGTAC----------------------------TCGTACTCATA------------------------------------------------------------C---CAGGGATGA-CAAAA----------TA-----------------------AAT----------------------------------------------------------------------------------------------------------------------CAAA---ATC--AAAT---------TTTAAATTT----------A-----------------------------------------------------------------------------------------------------------------------------------------------ATTTT------------------------------------------------TT--GTTTTT-CATTTTGT-T---T-CGTTCTAGATTGTTCAAAAACTTGGAGGTGATGGCAATCGGACAACAGTATAATGTATCCGTAGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAACTTGGAGGTGAT.................................	19	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTTCAAAAACTTGGAGGT....................................	22	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTTCAAAAACTTGGAGGTGATGG...............................	27	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATCGGACAACAGTAT..............	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTTGGAGGTGATG................................	18	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGACAACAGTATAATGG.........	21	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCAATCGGACAACAGTATAAT...........	25	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGACAACAGTATAATGT.........	21	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCAATCGGACAACAGT................	21	1	1.00	1	0	0	1	0	0

droVir3

GAT--AACTTTTGA-TTTTATAATCGAAA------CACG------------TTAGC-----T-GTCACTTGTGTACACCCACCTAATTTGTCAAAAACTAGTTGCAAAAG-------------GCAGCAA-----------TACCAATCCTATATGTATATAAATTAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------------------------------------------------------------------------------------------------------------TAGTCAATTTCGTATTAATA-------------------------------------A----------TA----------------------------------------------------------------ATTATT-ATTTTC---ATT-A-CATTTCAGATTGTTCAAAAGCTTGGTGGGGACGGAAATCGAACAACGGTATAATATTAAAGTATA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTATAATATTAAAGT...	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGGAAATCGAACAACGGT................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

AAT--AAATAT-----------ATCGATATGCTTTGCTTGACA-ATCGAAA--CACTCAAGT-GTCAGTGCTGTACAGCCAACTAAATTGTCAAAATCGAATTGCGGCC-------------AACAGCAA-----------TTCAAATGAAAAATATCGTTAGATTCAATAATTATTTC----A--------------------AA------------------------------------------------------------T------------C---------------------------------------------------ATCTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTT------------------------------------------------GT--ATTTTTTTTTTTTAT-ATT-TATATTTCAGATTGTTCAAAAACTTGGTGGCGATGGGAATCGGACAACTGTATAAAATTAAA-----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTGGCGATGGGAATC..........................	19	1	1.00	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATGGGAATCGGCG......................	17	17	0.06	1	0	0	0	1	0	0

droGri2

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGTTCAAAGACTCGGCGGAGACGGAAATCGGACAAGGGTATGAAATTAAAA--CA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_7665

x:15300116-15300265 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads