ID:

dsi_7651

 Coordinate:

3r:10749675-10749824 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.8 -34.7 -34.7

Flybase annnotation

five_prime_UTR [3r_10749586_10749674_+]; exon [3r_10749586_10749674_+]; intron [3r_10749675_10754641_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGATAGCGAAACGCGGCGGTCGATTTGCGGCAACCAAGCTGATTAGTGTGGTGAGTATTATGACTTGGATGGATATGGAGGAGCTTATAAATCTAGAGAAACTTCGCCGCCTTCGTCCTTTTAAGCGCACCTTCTTGTAGTCCATGCTGTCGATGCCATTACCATTCGACGGCAGCTGTGATTCGTTGTGCATTGTGTGTGGCGTTTTGGGGGACGACACCTTTGGGGTTACTGGTTATAATGATAGTAG
**************************************************..((((......))))(((((((..(((.(((((((.........)))...)))).)))..)))))))......((((((.....((((((((((((((((((............)))))))))..)).)))......))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 M024
male body
.............................................................................................................................................CCCTGCTGTCGACGCCA............................................................................................ 17 2 18 2.22 40 1 5 17 13 4 0 0 0
......................................................................................................................................TTGTAGTCCATGCTG..................................................................................................... 15 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................................CTTCTTGCAGTCCATGCTG..................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................TTTTGTAGTCCATGCTG..................................................................................................... 17 1 2 1.00 2 2 0 0 0 0 0 0 0
....................................................................................................................................ACTTGTAGTCCATGCTG..................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0
............................GGCACCCAAGCTGATTACTGG......................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0
............................GGCAACCAAGCTGATTAGTGT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................................AGTCCATGCTGTCGCGGCC............................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................ACATCGCCGCCTTCGTCCTT.................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................................GCAGTCCATGCTGTCGTT................................................................................................ 18 2 6 1.00 6 6 0 0 0 0 0 0 0
...................................................................................................................................TGCTTGGAGTCCATGCTG..................................................................................................... 18 2 16 0.81 13 13 0 0 0 0 0 0 0
............................................................................................................................................ACCCTGCTGTCGATGCCA............................................................................................ 18 2 4 0.75 3 0 0 2 1 0 0 0 0
............................AGCACCCAAGCTGATTACTG.......................................................................................................................................................................................................... 20 3 4 0.75 3 0 3 0 0 0 0 0 0
....................................................................................................................................TGTTGTAGTCCATGCTG..................................................................................................... 17 1 3 0.67 2 2 0 0 0 0 0 0 0
.............................GCACCCAAGCTGATTACTGG......................................................................................................................................................................................................... 20 3 3 0.67 2 0 2 0 0 0 0 0 0
........................................................ATTATGACCTGGATGGATGAGGA........................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0
.........................................................TTATGACCTGGATGGATGAGGA........................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................................................................................GTTGTAGTCCATGCTG..................................................................................................... 16 1 6 0.50 3 3 0 0 0 0 0 0 0
.....................................................................................................................................CCTGTAGTCCATGCTG..................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................................................................TCCCTGCTGTCGACGCCA............................................................................................ 18 2 7 0.43 3 0 0 1 2 0 0 0 0
........................................................................................................................................GCAGTCCATGCTGTCGCT................................................................................................ 18 2 14 0.36 5 5 0 0 0 0 0 0 0
................................................................TTGGAGGGATATCGAGGA........................................................................................................................................................................ 18 2 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................TTATGACCTGGATGGATGAGG............................................................................................................................................................................ 21 3 3 0.33 1 0 1 0 0 0 0 0 0
........................TTGTAGCACCCAAGCTGATTA............................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0
..................................................................................................................................CTGCTTGGAGTCCATGCTG..................................................................................................... 19 2 6 0.33 2 2 0 0 0 0 0 0 0
............................................................................................................................................ACCATGCTGTCGACGCCA............................................................................................ 18 2 4 0.25 1 0 0 1 0 0 0 0 0
..............................................TGTGGAGGGTACTATGACTT........................................................................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 0 1 0 0
...................................................................................................................................TACGTGTAGTCCATGCTG..................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0
.....................................................................................................................................ATTGTAGTCCATGCTG..................................................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0
................................................................................................................................ACCATATCGTAGTCCATGCTG..................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0
.......................................................GATTATGACCTGGATGGA................................................................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0
........................................................................................................................................GCAGTCCATGCTGTCG.................................................................................................. 16 1 5 0.20 1 1 0 0 0 0 0 0 0
........................................................................................................................................GCAGTCCATGCTGTCGAA................................................................................................ 18 2 6 0.17 1 1 0 0 0 0 0 0 0
...................................................................................................................................TTATCGTAGTCCATGCTG..................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 1 0
.....................................................................................................................................TTTGTAGTCCATGCTG..................................................................................................... 16 1 6 0.17 1 1 0 0 0 0 0 0 0
.......................TTTGTAGCACCCAAGCTGATT.............................................................................................................................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0 0 0
........................................................................................................................................GTAGTCCATGCTGTT................................................................................................... 15 1 14 0.14 2 2 0 0 0 0 0 0 0
........................................................................................................................................GCAGTCCATGCTGTCGCTAC.............................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0 0 0
........................................................................................................................................GCAGTCCATGCTGTCGCTTC.............................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0
..............................................................................................................................................CCTGCTGTCGATGCCA............................................................................................ 16 1 10 0.10 1 0 0 1 0 0 0 0 0
...........................................................................................................................................TTCCCTGCTGTCGACGCCA............................................................................................ 19 3 20 0.10 2 0 0 2 0 0 0 0 0
..........................................................................................ATCTAGCGAAACTTCGA............................................................................................................................................... 17 2 11 0.09 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGTTGTGCACTAGGTGTGG................................................ 19 3 11 0.09 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GAGGTTACTGGTTAGAATC....... 19 3 11 0.09 1 0 0 0 0 0 0 0 1
...................................................................................................................................TTCGTGAAGTCCATGCTG..................................................................................................... 18 2 11 0.09 1 1 0 0 0 0 0 0 0
...........................................................................................................................................GACCCTGCTGTCGACGCCA............................................................................................ 19 3 12 0.08 1 0 0 0 0 0 0 0 1
..........................................................................................................................................AGTCCATGCTGTCGC................................................................................................. 15 1 14 0.07 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................CATCGTCTGTGGCGTTTT.......................................... 18 2 14 0.07 1 0 0 0 0 0 1 0 0
...................................................................................................ATCTTCGCCGGCTTCGTC..................................................................................................................................... 18 2 16 0.06 1 0 0 0 1 0 0 0 0
......................................................................................................................................TCGTAGTCCATGCTG..................................................................................................... 15 1 16 0.06 1 1 0 0 0 0 0 0 0
........................................................................................................................................GCAGTCCATGCTGTC................................................................................................... 15 1 16 0.06 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................GTGATTGGTTGTGCA.......................................................... 15 1 17 0.06 1 0 0 0 0 1 0 0 0
..................................................................................................................................TATCCTGTAGTCCATGCTG..................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................GCATTGGATCTGGCGTTTT.......................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCTATCGCTTTGCGCCGCCAGCTAAACGCCGTTGGTTCGACTAATCACACCACTCATAATACTGAACCTACCTATACCTCCTCGAATATTTAGATCTCTTTGAAGCGGCGGAAGCAGGAAAATTCGCGTGGAAGAACATCAGGTACGACAGCTACGGTAATGGTAAGCTGCCGTCGACACTAAGCAACACGTAACACACACCGCAAAACCCCCTGCTGTGGAAACCCCAATGACCAATATTACTATCATC
**************************************************..((((......))))(((((((..(((.(((((((.........)))...)))).)))..)))))))......((((((.....((((((((((((((((((............)))))))))..)).)))......))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................AGCAGGAAAATTCGCGTGGAA..................................................................................................................... 21 0 1 2.00 2 0 2 0 0
.................................GGTTCGACTAATGAC.......................................................................................................................................................................................................... 15 1 3 2.00 6 6 0 0 0
......................................................................................................................AAAATTCGCGTGGAAGAACATCAGGTA......................................................................................................... 27 0 1 1.00 1 0 0 1 0
.................................GGTTCGACTAATGACC......................................................................................................................................................................................................... 16 2 20 0.20 4 4 0 0 0
...............................TGGGTTCGACTAATGAC.......................................................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0
............CGCCGCCATCTAAAC............................................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 1
...........GCGCCGGCAGCTAAA................................................................................................................................................................................................................................ 15 1 10 0.10 1 0 1 0 0
.............................................................................................................................................................................TCGGTACTAAGCAGCACGT.......................................................... 19 3 17 0.06 1 0 0 1 0

Generated: 04/24/2015 at 10:48 AM