dsi_7644

five_prime_UTR [2r_2484790_2484792_-]; CDS [2r_2484690_2484789_-]; exon [2r_2484690_2484792_-]; intron [2r_2484793_2490110_-]

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTTGAGCGCTCAATGTTTAATGTTTCTTCTAGCTTTTATAGTTCTTGAGGTCTGGACGTTCATACGGACAGACGGACATGATCAGATCGCCAGTATAGTGCAACTGATCAAGAATTTATATATTTTATAGTGTTTGTTTTCTAATAATTTATTTTCGCATAATTAGCCATTGCAAACATTTTTCTCTCTTTCTTTTACAGGCCATGCACAAGGAAAAAATTATTAATTCACAAAATGCTAGCAAAATAAA ************************************************((((..(((....)))..))))......(((((((..(((.......)))...)))))))..................(((((((((...(((((................))))).....)))))))))....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
..............................................................TACGGACAGACGGACATGATCAGAT...................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0
............................................TTGAGGTCTGGACGTTCATACGGAAT....................................................................................................................................................................................	26	2	1	1.00	1	1	0	0	0	0	0	0
......................................................GACGTTCATACGGACAGACGGATATGA.........................................................................................................................................................................	27	1	9	0.44	4	0	0	0	3	1	0	0
.........................................................GTTCATACGGACAGACGGACTTTATGA......................................................................................................................................................................	27	3	4	0.25	1	0	0	1	0	0	0	0
..............................................................TACGGACAGACGAACATGATAT......................................................................................................................................................................	22	3	7	0.14	1	0	0	0	0	0	1	0
..............................................................TACGGACAGACGGACATGA.........................................................................................................................................................................	19	0	7	0.14	1	0	0	0	0	0	1	0
.................................................................................................................................GTGTTTGTATTCTAA..........................................................................................................	15	1	15	0.13	2	0	0	0	2	0	0	0
..............................................................TACGGACAGACGGATATGATTAGAT...................................................................................................................................................................	25	2	9	0.11	1	0	0	0	0	1	0	0
.........................................................GTTCATACGGACAGACGGAC.............................................................................................................................................................................	20	0	20	0.10	2	2	0	0	0	0	0	0
........................................................CGTTCATACGCACAGACGGACATG..........................................................................................................................................................................	24	1	20	0.10	2	0	0	2	0	0	0	0
...............................................................................GCTCAGATCGCCAGT............................................................................................................................................................	15	1	11	0.09	1	0	0	0	0	1	0	0
...............................................AGGTCTGGATGTTTCTACGG.......................................................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	0	1
........................................GTTCTTGACGTCTGG...................................................................................................................................................................................................	15	1	16	0.06	1	0	0	0	0	1	0	0
..............................................................TACGGACAGACTGACATGA.........................................................................................................................................................................	19	1	16	0.06	1	1	0	0	0	0	0	0
...........................................................TCATAAGGACAGACGGACATGAA........................................................................................................................................................................	23	2	18	0.06	1	0	0	1	0	0	0	0
........................................................CGTTCATACGGACAGACGGACAT...........................................................................................................................................................................	23	0	20	0.05	1	0	0	1	0	0	0	0
..............................................................TACGGACAGACGGACATGTT........................................................................................................................................................................	20	1	20	0.05	1	1	0	0	0	0	0	0
...........................................................TCATACGCACAGACGGACATG..........................................................................................................................................................................	21	1	20	0.05	1	0	0	1	0	0	0	0
..............................................................TACGCACAGACGGACATGCTA.......................................................................................................................................................................	21	3	20	0.05	1	0	0	1	0	0	0	0

AAACTCGCGAGTTACAAATTACAAAGAAGATCGAAAATATCAAGAACTCCAGACCTGCAAGTATGCCTGTCTGCCTGTACTAGTCTAGCGGTCATATCACGTTGACTAGTTCTTAAATATATAAAATATCACAAACAAAAGATTATTAAATAAAAGCGTATTAATCGGTAACGTTTGTAAAAAGAGAGAAAGAAAATGTCCGGTACGTGTTCCTTTTTTAATAATTAAGTGTTTTACGATCGTTTTATTT ************************************************((((..(((....)))..))))......(((((((..(((.......)))...)))))))..................(((((((((...(((((................))))).....)))))))))....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
......................................................................................................................................................................................AGAGAGAAAGAAAATGTCCGGTACGT..........................................	26	0	1	2.00	2	2	0	0	0	0
...............................CGAAAATATCAAGAACTCCAGACCTGT................................................................................................................................................................................................	27	1	1	1.00	1	0	1	0	0	0
...............................................................................................ATCACGTTGACTAGTTCTTAAAT....................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
..................................................................................GTCTAGCGGTCATATCACGTTGACTAGT............................................................................................................................................	28	0	1	1.00	1	0	0	0	1	0
.......................................TCAAGAACTCCAGACCTGCAAGTA...........................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
.....................................................CCTGCAAGTATGCCTGTCTGCCT..............................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................TAATCGGTAAAGTTTGTAAGAAT..................................................................	23	3	2	1.00	2	2	0	0	0	0
......................................................CTGCAAGTATGCGTGTCTGCCTGTAC..........................................................................................................................................................................	26	1	20	0.90	18	9	0	0	9	0
......................................................CTGCAAGTATGCCTGTCTGCCTGT............................................................................................................................................................................	24	0	20	0.85	17	2	2	13	0	0
...................................................................................................................................................................ATCGGTAAAGTTTGTAAGAAGAA................................................................	23	3	4	0.50	2	2	0	0	0	0
...................................................................................................................................................................ATCGGTAAAGTTTGTAAGAAGAT................................................................	23	3	2	0.50	1	1	0	0	0	0
....................................................................................................................................................................TCGGTAAAGTTTGTAAGAAGAAA...............................................................	23	3	2	0.50	1	1	0	0	0	0
....................................................................................................................................................................TCGGTAAAGCTTGTAAGAAGAG................................................................	22	3	3	0.33	1	1	0	0	0	0
..............................................................ATGCCTGTCTGCCTGTACT.........................................................................................................................................................................	19	0	7	0.14	1	0	0	1	0	0
.........................................................CAAGTATGCCTGTCTGCCTGTA...........................................................................................................................................................................	22	0	20	0.10	2	0	2	0	0	0
........................................................GCAAGTATGCCTGTCTGCCT..............................................................................................................................................................................	20	0	20	0.10	2	0	0	2	0	0
.......................................................TGCAAGTATGCCTGTCTGCCTGT............................................................................................................................................................................	23	0	20	0.10	2	0	0	0	2	0
.......................................................TGCAAGTATGCCTGTCT..................................................................................................................................................................................	17	0	20	0.10	2	1	0	1	0	0
...........................................................AGTATGCCTGTCTGCCTGT............................................................................................................................................................................	19	0	20	0.10	2	1	1	0	0	0
......................................................CTGCAAGTATGCCTGTCTGCC...............................................................................................................................................................................	21	0	20	0.10	2	0	0	2	0	0
........................................................GCAAGTATGCCTGTCTGCCTGT............................................................................................................................................................................	22	0	20	0.10	2	0	0	2	0	0
.....................................................................................................................................................................................AAGAGAGAAAGAAAA......................................................	15	0	12	0.08	1	0	0	0	1	0
..............................TCGAAAATATCAAGAAC...........................................................................................................................................................................................................	17	0	15	0.07	1	0	0	1	0	0
.........................................................CAAGTATGCCTGTCTGCCT..............................................................................................................................................................................	19	0	20	0.05	1	0	0	0	0	1
......................................................CTGCAAGTATGCGTGTCTGCCTGTA...........................................................................................................................................................................	25	1	20	0.05	1	0	0	0	0	1
.........................................................CAAGTATGCCTGTCTG.................................................................................................................................................................................	16	0	20	0.05	1	0	0	1	0	0
........................................................GCAAGTATGCCTGTCT..................................................................................................................................................................................	16	0	20	0.05	1	0	0	0	1	0
............................................................GTATGCCTGTCTGCCTGT............................................................................................................................................................................	18	0	20	0.05	1	0	1	0	0	0
...........................................................AGTATGCCTGTCTGCCTGTAC..........................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:2484743-2484992 -	dsi_7644	TTTGAGCGCTCAATGTTTA--ATG-TT--TCTTCTAGCTTTTAT-AGTTCTTGAGGTCTGGACGTTCATAC--------------------------------------------GGACAGACGGACATGATCAGATCGCC-AGTATAGTGCAACTGATCAAGAATTTA----TATATTTTATAGTGTTTGTTTTCTAATAATTTATTTT------CGCATAAT---TAGCCAT---------TGCAAACATTT-----TTCTCTCTTTCTTTT--------ACAG-GCCATGCACAA------GGAAA-----------AAAT-------------------------TAT--------TAATTCACAA--A-ATGCTAGCAAAAT--AAA
droSec2	scaffold_26:172079-172328 -		TTTAAGCGCTCAATGTTTA--ATG-TT--TCTTCTAACTCTTAT-AGTTCTTGAGGTCTGAACGTTCAAAC--------------------------------------------GGACAGACGGACATGATCAGAACGCC-AGTATAATGCAACTGATCAAGAATTTA----TATATTTTATAGGGTTTGTTTTCTAACAATTTATTTT------CGCATAAT---TAGCCAT---------TGCAAACATTT-----TTCTCTCTTTCTTTT--------ACAG-GCCATGCACAA------GGAAA-----------AAAT-------------------------TAT--------TAATTCACAA--A-ATGCTAGCAAAAT--AAA
dm3	chr2R:1535280-1535515 -		CTTGACCGCTCAATGTTTA--ATG-TT--TCTTCTAGCTCTTAT-AGTTCTTAAG---------------------------------------------------------GTCAGACAGACGGACATGATCATATCGCC-AGTATAGTGAAACTGATCAAGAATTTA----TATATTTTATAGGGTTGGTTTTGTAACGATTTCTTTT------CGCATAAT---GAGCCAT---------TGCAAACATTT------TCTCTCTTTCTCTT--------ACAG-GCCATGCACAA------GGAAA-----------AAAT-------------------------TAT--------TAATTCACAA--A-ATGCTAGCAAAAT--AAA
droEre2	scaffold_4784:24774129-24774360 -		TCCGGAAGCTGCATGCTT--AAT-CTCAACATTCTAGCTTTTGT-AGTTCCTGAGATCGGGGCATTCTTAC--------------------------------------------GGACAGACGGACATGGCCAGTTAGACTCGGCTATTGATCCTGATCAATAAT--------ATACTTTATATGGTCGTAA-----ACGTTTATTTCTTCCTGTTACATACTTTTC-------------AACGAATCTACTA-----CACCCA-TTTACTCT--------ACGG-ACAACGGATATAAA------AACACA--------------------------------------------------------A-------GCAGCACAAT--AAG
droYak3	v2_chrUn_001:702629-702862 +		A------------TGCTTA--ATC-TC---TCTCTAGCTTTTGT-AGTTCCTGAGATCTCGACGTGCCTAC--------------------------------------------GGACAGACGGACAGGGTCAGATCGACTCGGCTAGTGATCCTGATCAAGAATATA----TATACTTTATATGGTCGGAA-----ACGATTCCTTCTGCCT--TATG-------T-------------AACGAATCTAATA-----TACCCT-TTTACTCT--------ACGA-GTAACGGGTATAGT------AAT-----------AGTACTTAA----TT-------------T------------TGTTACGA--A-ACACTTAGAGAACAGGAA
droEug1	scf7180000409759:283629-283880 +		CTTC--------ATGCTT--AAT-CTCAACTTTGTATCTGTTAT-AGTTCCTGAGATCTCAGAGTTCATAC--------------------------------------------GGACAGACGGACATGGCTCAATCGACTTTGCTATTGATCCTGATCAAGAATATA----TATACTTTATAGGGTCGGAA-----ATGCTTCCATCTACGTGTTGTATACTTTTC-------------AACGAATCTAGTACTCTTTAGTCT-TTTACTCT--------AAGA-GTAACGGGTATAAA------AAGAAA-------GTAT-------------------------TAA--------TAGTT---AAAGA-GCAATAAGAAAAT--GGT
droBia1	scf7180000297968:32472-32740 -		TATGTGCCTCCCA-------AGT-CTGACGCTTTTAGCTTTTAT-AGTTTCCGAAACCGTAGCGTTCATACGG------------------------A----CAGACGGACAGTCGGACAGACGAACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATATA----TATACTTTATGGGGTCGGAA-----AAGCTTCCTTTTACTTTTTACATACTTTCC-------------GACGAATCTAGTA-----TACTCT-TTTACTCT--------ACGA-GTAACGAATATAAT------AAA----------------------------GAAAA--TAAGTTA--------TAATGTCCAT--A-TAGCACGAAAAAT--AAT
droTak1	scf7180000415388:96016-96245 +		C------------------------------TTCTAGCTTTTATTAGTTTCCGAGATCTCAGCGTTCATACG----------------------------------------GACAGACAGACGGACATGGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAATATA----TATACTTTATGGGGTCGGAA-----ACGCTTCCTTCTAGCTGTTACATAATTTTG-------------CACGAATACAATA-----TACCCT-TTTACTAT--------ACGA-GTAACGGGTATAAA------TACCAA-------------TTAG----AT-------------TTT--------CAATTAAAAA--A-A------TAAAGT--AAA
droEle1	scf7180000490980:97140-97364 -		T--------------------------------CTAGCATTTAT-AGTTTCCGAGATCTCGACGTTCATACA------------------------------------GACGGACAGAAAGACGGACATAGCTATCTCGACTCGGCTATTGAACCTGATTAAGAATA------TATACTTTACATGGTTGGAA-----TCGCTTCCTTCTAACTGTTACATACTTTTC-------------AGTGAATACAATA-----TACCCT-TTTATTTT--------ACGA-GTAACGGGTATAAA------CATTAT-------------TTAC----AC-------------T-------------TTAAAAA--A-ATGGTA-----TC--ATA
droRho1	scf7180000776646:29059-29292 +		T-----------------------------CTTCTAGCTTTTAT-AGTTTCCGAGATCTCAGCGTTCATACGG------------------------A--------CAGACAGACGGACAGACGGACATGGCTATATCGACTCGGCTAGTGACCCTGATCAAGAATATA----TATACTTTATAGGGTCGGAA-----ACGCTTTTTTCTAGCTGTTACATACTTTTG-------------CACGAATACAATA-----TACCCT-TTTACTCT--------ACGA-GTAACGGGTATAAA------AAGATA--------------------------------------G--------GAA-TTACAA--A-ATTATAGCGGTAT---GA
droFic1	scf7180000453290:15135-15311 +		A---------------------------------------------------------------------------------------------------------CGGACAGACTGACAGACGTACATACGTATTTGGATTCTGATCGTGATGCTGAACAAGAATATA----TATACTTTATGGGGTCTGAA-----GTGTCTCCCTCACTGCGTTGCAAACTTCTG-------------ACTGAAATTG-----------ACC-TTTGCTCT--------GC------AAGGGTATAAA------AAT--------------------------------------------------TGATTTTCGA--A-AGGCTT-CAAGGG--ACG
droKik1	scf7180000300013:709-910 +		G------------------------------------------------------------A--------------------------------------------CGGACAGACAGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATA----TATACTTTATAGGGTCGGAA-----ACGTCTCCTTGACTGCGTTGCAAACTTCTG-------------ACTGAAATTATAA-----TACCCT-GC----------------------AAGGGTATAAA------AATTAA-------------ATAAGCTC--AAATATA--ACAATAA--------TTAAATAAAT--C-CAGACAGGATAAT--AAA
droAna3	scaffold_10639:228-418 +		A---------------------------------------------------------------------------------------------------------CGGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATA----TATACTTTATAGGGTCGGAG-----ATGTCTCCTTCACTGCGTTGCACACTTTTG-------------ACCAAAATTATAA-----TACCCT-------CT--------GC------AAGGGTATAAA------TATGAG-------------CCAA--------GCAAACGAC--T----------TG---GACAA--A-A-TCTAAAAAAAA--AAA
droBip1	scf7180000392024:3585-3781 -		G------------------------------------------------------------A--------------------------------------------CGGACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATA----TATACTTTATAGGGTCGGAG-----ATGTCTCCTTCACTGCGTTGCACACTTTTG-------------GACAAAATTATAA-----TACCCT-------CT--------GC------AAGGGTATAAA------AACCCAGCACAAACAAA-------------------------AAT--------TATTACACAT--AAATGTCAACACCTA--AAA
dp5	Unknown_group_377:3586-3855 +		TT----------------------------GCTCTAGCTCTTAT-AGTCTTTGAGCATTAGGCGCTGAAGGGGACGGACAGACGGACAGACGGACAGACGGACGGACGGACAGACGGACAGACAGACATGTCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATA----TATACTTTATGGGGTCGGAA-----ACGATTCCTTCTGGACGTTACACACATACA------TTTTCACCACAAATCTAATA-----TACCCC-TATACTCT--------TCGA-GTACCGGGTATAAA------AAGAAA-------AAC--------------------------TAT----------------------ATAGTAAGAATAT--AAT
droPer2	scaffold_64:328891-329099 +		TT----------------------------GCTCTAGCTTTTAT-AGTCTCGGAGAACTAGGCGCTCATAGG----------------------------------------GACGGACAGACAGTCATGGCTCAATCAACTCGGCTATTGATGCTGATCAAGAATATG----TACACTTTATGGGGTCGGAA-----AAGCTTCCTTCTGGACGTTACACACATCCA------CTTTCACCACAAATCTAATA-----T-----------------------------------------------------------------------------------------TGTATATGTTGTATATCACAA--A-GCGCTTGACTGAA--AAA
droWil2	scf2_1100000004729:802808-803070 +		CTATAGCAGTCTACGTTCAAAAT-TTGGTGACTCTAGCTGTTAT-AGTCTCCGAGACTTTGATGTTCATACAG------------------------ACGGACATGCGAA-------------------GGGACGATCGG-ACGGCTGTTGATGCTGATCAAGAATATATATATATACCTTATGGTGTCGAAA-----AAACTTTCT-------ATTACATACATTTT-------------GGCGCCTTTAATA-----TACTAC-TTTATCCC--------ATTAGTTACATGGTATAAAAAATGAAA-----------CGAA------------AAATACG--ACAGAAA------------T--GAA--G-AGGCCCACAAAGA--AGA
droVir3	scaffold_12958:2332159-2332429 +		GA---GCAC-CTACATCTA--AAA-TT---TCTCTAGCTCTTAT-AGGTTCTGAGACCCTTGCGTTTATACAA------------------------ACGGACAGACGAACAGACAGACAGACGGACATGGCTAGATCGACTCGGCTATTGGTGCTGATCAAGAATATA----TTTAATTTATGGGGTCGGAG-----ATGCTTCCTTCTGCCTGATACATACATTTG-GATTT-------TACACACACAATA-----TACCCT-TATTTTTA--------ATGG-GTTCAGAGTACAAA------ATTAAT-------------------------------------CT--------TAATTTTCTATAT-TCATCAATAAATA--CAA
droMoj3	scaffold_6496:8114900-8115165 -		TATGC-------ATGCCA--AAT-TTCAGCTCTCTAGCTCTTAT-AACTTCTGAGATCGACGCACTCATACGG------------------------ACGGACGGACGGACGGACGGACAGACGGACAGGGCTATATCGACTCAGCTCGTCGCGCTGATCAAGAATATA----TATACTTTGTGGGGTCTGCC-----ACGCCTCCTTCTGCCCGTTACATACTTTTT-------------CACAAAACCATTA-----TACCCT-GATTTCCC-ATTTTCAATGG-GTTCAGGGTATAAA------AAAAA-------------------------------------TAC--------AAA-ATACAA--A-AT----ACAAAAT--AAA
droGri2	scaffold_14853:7968510-7968772 +		TC---------AA-------AAT-TTGAAGTCTCTAGCTCTTAA-AGTCTCTGAGATCTGCGTGTTCATACA------------------------------------AACAGACGGACAGACGGACATGGCTATATCGACTCGGCTGTTGACCCTGATCAAGAAAATA----TATACTTTATCGGGTCGGAG-----TTGCTTCCTTCTGCCAGTTACATACATATG-------------CACAAAACCATTA-----TACCCT-TTTTCAACAATTTTTAATGG-GTTCAGGGTATACA------AATGGGTAGCGAGAAAG-------------------------AAC--------TGAAACACAC--A-AGACTTCCATA----ATA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTTGAGCGCTCAATGTTTA--ATG-TT--TCTTCTAGCTTTTAT-AGTTCTTGAGGTCTGGACGTTCATAC--------------------------------------------GGACAGACGGACATGATCAGATCGCC-AGTATAGTGCAACTGATCAAGAATTTA----TATATTTTATAGTGTTTGTTTTCTAATAATTTATTTT------CGCATAAT---TAGCCAT---------TGCAAACATTT-----TTCTCTCTTTCTTTT--------ACAG-GCCATGCACAA------GGAAA-----------AAAT-------------------------TAT--------TAATTCACAA--A-ATGCTAGCAAAAT--AAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................TAC--------------------------------------------GGACAGACGGACATGATCAGAT...............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................TTGAGGTCTGGACGTTCATAC--------------------------------------------GGAAT................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................TAC--------------------------------------------GGACAGACGGACATGA.....................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................GTTCATAC--------------------------------------------GGACAGACGGAC.........................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................CGTTCATAC--------------------------------------------GGACAGACGGACAT.......................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

TTTAAGCGCTCAATGTTTA--ATG-TT--TCTTCTAACTCTTAT-AGTTCTTGAGGTCTGAACGTTCAAAC--------------------------------------------GGACAGACGGACATGATCAGAACGCC-AGTATAATGCAACTGATCAAGAATTTA----TATATTTTATAGGGTTTGTTTTCTAACAATTTATTTT------CGCATAAT---TAGCCAT---------TGCAAACATTT-----TTCTCTCTTTCTTTT--------ACAG-GCCATGCACAA------GGAAA-----------AAAT-------------------------TAT--------TAATTCACAA--A-ATGCTAGCAAAAT--AAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................AT--------TAATTCACAA--A-ATGCT.............	18	1	1.00	1	0	0	1	0

dm3

CTTGACCGCTCAATGTTTA--ATG-TT--TCTTCTAGCTCTTAT-AGTTCTTAAG---------------------------------------------------------GTCAGACAGACGGACATGATCATATCGCC-AGTATAGTGAAACTGATCAAGAATTTA----TATATTTTATAGGGTTGGTTTTGTAACGATTTCTTTT------CGCATAAT---GAGCCAT---------TGCAAACATTT------TCTCTCTTTCTCTT--------ACAG-GCCATGCACAA------GGAAA-----------AAAT-------------------------TAT--------TAATTCACAA--A-ATGCTAGCAAAAT--AAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................TTTCTTTT------CGCATAAT---GAGCC................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................AGAATTTA----TATATTTTAT.................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................AGTGAAACTGATCAAGAA...................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAATTCACAA--A-ATGCTAGCAAAA......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................ATAGTGAAACTGATCAAGAAT..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AAAT-------------------------TAT--------TAATTCACAA--A-ATGCTAGC..........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................................................................CACAA--A-ATGCTAGCAAAAT--A..	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAATTCACAA--A-ATGCTAGCA.........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTCTAGCTCTTAT-AGTTCTT....................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCCGGAAGCTGCATGCTT--AAT-CTCAACATTCTAGCTTTTGT-AGTTCCTGAGATCGGGGCATTCTTAC--------------------------------------------GGACAGACGGACATGGCCAGTTAGACTCGGCTATTGATCCTGATCAATAAT--------ATACTTTATATGGTCGTAA-----ACGTTTATTTCTTCCTGTTACATACTTTTC-------------AACGAATCTACTA-----CACCCA-TTTACTCT--------ACGG-ACAACGGATATAAA------AACACA--------------------------------------------------------A-------GCAGCACAAT--AAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................ATTCTAGCTTTTGT-AGTTCCTGAGATC..............................................................................................................................................................................................................................................................................................................................................	27	20	0.40	8	0	0	0	0	0	0	8
....................................................................TAC--------------------------------------------GGACAGACGGACATGGCCA..................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0	0

droYak3

A------------TGCTTA--ATC-TC---TCTCTAGCTTTTGT-AGTTCCTGAGATCTCGACGTGCCTAC--------------------------------------------GGACAGACGGACAGGGTCAGATCGACTCGGCTAGTGATCCTGATCAAGAATATA----TATACTTTATATGGTCGGAA-----ACGATTCCTTCTGCCT--TATG-------T-------------AACGAATCTAATA-----TACCCT-TTTACTCT--------ACGA-GTAACGGGTATAGT------AAT-----------AGTACTTAA----TT-------------T------------TGTTACGA--A-ACACTTAGAGAACAGGAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................C---TCTCTAGCTTTTGT-AGTTCCTGAGA................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................CAGATCGACTCGGCTAGTGATCCT............................................................................................................................................................................................................................................	24	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................ATCGACTCGGCTAGTGATCCTGATC........................................................................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCGACTCGGCTAGTGATCCTGA..........................................................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ATCGACTCGGCTAGTGATCCT............................................................................................................................................................................................................................................	21	16	0.06	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTCGGCTAGTGATCCTGATCA.......................................................................................................................................................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................GCTAGTGATCCTGATCAAGAAT..................................................................................................................................................................................................................................	22	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0
....................................GCTTTTGT-AGTTCCTGAGATC..............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
...................................AGCTTTTGT-AGTTCCTGAGA................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AACGAATCTAATA-----TACCCT-TT............................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................TGT-AGTTCCTGAGATCTCGACGT.......................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATACTTTATATGGTCGGAA-----A.................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CTTC--------ATGCTT--AAT-CTCAACTTTGTATCTGTTAT-AGTTCCTGAGATCTCAGAGTTCATAC--------------------------------------------GGACAGACGGACATGGCTCAATCGACTTTGCTATTGATCCTGATCAAGAATATA----TATACTTTATAGGGTCGGAA-----ATGCTTCCATCTACGTGTTGTATACTTTTC-------------AACGAATCTAGTACTCTTTAGTCT-TTTACTCT--------AAGA-GTAACGGGTATAAA------AAGAAA-------GTAT-------------------------TAA--------TAGTT---AAAGA-GCAATAAGAAAAT--GGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATGTGCCTCCCA-------AGT-CTGACGCTTTTAGCTTTTAT-AGTTTCCGAAACCGTAGCGTTCATACGG------------------------A----CAGACGGACAGTCGGACAGACGAACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATATA----TATACTTTATGGGGTCGGAA-----AAGCTTCCTTTTACTTTTTACATACTTTCC-------------GACGAATCTAGTA-----TACTCT-TTTACTCT--------ACGA-GTAACGAATATAAT------AAA----------------------------GAAAA--TAAGTTA--------TAATGTCCAT--A-TAGCACGAAAAAT--AAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C------------------------------TTCTAGCTTTTATTAGTTTCCGAGATCTCAGCGTTCATACG----------------------------------------GACAGACAGACGGACATGGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAATATA----TATACTTTATGGGGTCGGAA-----ACGCTTCCTTCTAGCTGTTACATAATTTTG-------------CACGAATACAATA-----TACCCT-TTTACTAT--------ACGA-GTAACGGGTATAAA------TACCAA-------------TTAG----AT-------------TTT--------CAATTAAAAA--A-A------TAAAGT--AAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T--------------------------------CTAGCATTTAT-AGTTTCCGAGATCTCGACGTTCATACA------------------------------------GACGGACAGAAAGACGGACATAGCTATCTCGACTCGGCTATTGAACCTGATTAAGAATA------TATACTTTACATGGTTGGAA-----TCGCTTCCTTCTAACTGTTACATACTTTTC-------------AGTGAATACAATA-----TACCCT-TTTATTTT--------ACGA-GTAACGGGTATAAA------CATTAT-------------TTAC----AC-------------T-------------TTAAAAA--A-ATGGTA-----TC--ATA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-----------------------------CTTCTAGCTTTTAT-AGTTTCCGAGATCTCAGCGTTCATACGG------------------------A--------CAGACAGACGGACAGACGGACATGGCTATATCGACTCGGCTAGTGACCCTGATCAAGAATATA----TATACTTTATAGGGTCGGAA-----ACGCTTTTTTCTAGCTGTTACATACTTTTG-------------CACGAATACAATA-----TACCCT-TTTACTCT--------ACGA-GTAACGGGTATAAA------AAGATA--------------------------------------G--------GAA-TTACAA--A-ATTATAGCGGTAT---GA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A---------------------------------------------------------------------------------------------------------CGGACAGACTGACAGACGTACATACGTATTTGGATTCTGATCGTGATGCTGAACAAGAATATA----TATACTTTATGGGGTCTGAA-----GTGTCTCCCTCACTGCGTTGCAAACTTCTG-------------ACTGAAATTG-----------ACC-TTTGCTCT--------GC------AAGGGTATAAA------AAT--------------------------------------------------TGATTTTCGA--A-AGGCTT-CAAGGG--ACG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G------------------------------------------------------------A--------------------------------------------CGGACAGACAGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATATA----TATACTTTATAGGGTCGGAA-----ACGTCTCCTTGACTGCGTTGCAAACTTCTG-------------ACTGAAATTATAA-----TACCCT-GC----------------------AAGGGTATAAA------AATTAA-------------ATAAGCTC--AAATATA--ACAATAA--------TTAAATAAAT--C-CAGACAGGATAAT--AAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A---------------------------------------------------------------------------------------------------------CGGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATATA----TATACTTTATAGGGTCGGAG-----ATGTCTCCTTCACTGCGTTGCACACTTTTG-------------ACCAAAATTATAA-----TACCCT-------CT--------GC------AAGGGTATAAA------TATGAG-------------CCAA--------GCAAACGAC--T----------TG---GACAA--A-A-TCTAAAAAAAA--AAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................ATATCGACTCAGGAGGTGA................................................................................................................................................................................................................................................	19	20	0.65	13	0	0	0	0	0	13
...............................................................................................................................................................................................AG-----ATGTCTCCTTCACTGCGTT...............................................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	7
...........................................................................................................................................................................................................TCCTTCACTGCGTTGCACAC.........................................................................................................................................................................	20	20	0.30	6	0	6	0	0	0	0
........................................................................................................................................................................A----TATACTTTATAGGGTCGGAG-----ATGT..............................................................................................................................................................................................	25	20	0.25	5	5	0	0	0	0	0
................................................................................................................................................................................................................................TTTG-------------ACCAAAATTATAA-----TACCC................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0
...............................................................................................................................................................................TACTTTATAGGGTCGGAG-----ATGTCT............................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	2	0
...............................................................................................................................................................................TACTTTATAGGGTCGGAG-----AT................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0
........................................................................................................................GACGGACATGCTCATATCGACTCAGGA.....................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................CTGATCAAGAATATA----TATACTTTAT.................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
......................................................................................................................CAGACGGACATGCTCATATCGACTCAG.......................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................TCACTGCGTTGCACACTTTTG-------------ACCAA..................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................GCAAACGAC--T----------TG---GACAA--A-A-TC..............	21	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................ATACTTTATAGGGTCGGA........................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droBip1

G------------------------------------------------------------A--------------------------------------------CGGACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATATA----TATACTTTATAGGGTCGGAG-----ATGTCTCCTTCACTGCGTTGCACACTTTTG-------------GACAAAATTATAA-----TACCCT-------CT--------GC------AAGGGTATAAA------AACCCAGCACAAACAAA-------------------------AAT--------TATTACACAT--AAATGTCAACACCTA--AAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TT----------------------------GCTCTAGCTCTTAT-AGTCTTTGAGCATTAGGCGCTGAAGGGGACGGACAGACGGACAGACGGACAGACGGACGGACGGACAGACGGACAGACAGACATGTCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATA----TATACTTTATGGGGTCGGAA-----ACGATTCCTTCTGGACGTTACACACATACA------TTTTCACCACAAATCTAATA-----TACCCC-TATACTCT--------TCGA-GTACCGGGTATAAA------AAGAAA-------AAC--------------------------TAT----------------------ATAGTAAGAATAT--AAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................TTAT-AGTCTTTGAGCATTAGGCGC.......................................................................................................................................................................................................................................................................................................................................	24	20	39.30	786	0	0	786	0	0	0	0	0	0	0
........................................................................GACGGACAGACGGACAGACGG...........................................................................................................................................................................................................................................................................................................	21	20	16.75	335	0	0	0	0	0	0	0	0	335	0
.........................................TAT-AGTCTTTGAGCATTAGGCGC.......................................................................................................................................................................................................................................................................................................................................	23	20	15.00	300	0	300	0	0	0	0	0	0	0	0
........................................TTAT-AGTCTTTGAGCATTAGGCGCT......................................................................................................................................................................................................................................................................................................................................	25	20	14.70	294	0	0	0	0	294	0	0	0	0	0
................................................................................GACGGACAGACGGACAGACGG...................................................................................................................................................................................................................................................................................................	21	20	10.25	205	0	0	0	0	0	0	0	185	0	20
........................................................................................GACGGACAGACGGACGGACGGAC.........................................................................................................................................................................................................................................................................................	23	20	5.60	112	0	0	0	0	0	0	0	112	0	0
...........................................................................................................................................................................................TCGGAA-----ACGATTCCTTCTGGACG.................................................................................................................................................................................	23	20	5.15	103	0	0	0	0	0	0	0	0	103	0
..................................................................................................CGGACGGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................	21	20	3.50	70	0	0	0	0	0	0	0	34	36	0
..............................................................CGCTGAAGGGGACGGACAGA......................................................................................................................................................................................................................................................................................................................	20	20	3.00	60	0	0	0	0	0	0	0	0	60	0
.................................................................................ACGGACAGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................................	22	20	2.80	56	0	0	0	0	0	0	0	0	56	0
.................................................................................ACGGACAGACGGACAGACGGACGG...............................................................................................................................................................................................................................................................................................	24	20	2.35	47	0	0	0	0	0	0	0	47	0	0
..........................................................................CGGACAGACGGACAGACGGACAGACG....................................................................................................................................................................................................................................................................................................	26	20	2.05	41	0	0	0	0	0	0	0	9	30	2
.....................................................................GGGGACGGACAGACGGACAGACGGAC.........................................................................................................................................................................................................................................................................................................	26	20	1.95	39	0	0	0	0	0	0	0	0	39	0
......................................................................GGGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................................................	21	20	1.65	33	0	0	0	0	0	0	0	2	31	0
...........................................................................................................................................................................................TCGGAA-----ACGATTCCTTCTGGACGT................................................................................................................................................................................	24	20	1.65	33	0	0	0	0	0	0	0	0	33	0
...............................................................................AGACGGACAGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................................	24	20	1.65	33	0	0	0	0	0	0	0	22	11	0
.....................................................................................................ACGGACGGACAGACGGACAGACAGAC.........................................................................................................................................................................................................................................................................	26	20	1.45	29	0	0	0	0	0	0	0	29	0	0
.................................................................................ACGGACAGACGGACAGACGGACGGA..............................................................................................................................................................................................................................................................................................	25	20	1.35	27	0	0	0	0	0	0	0	27	0	0
..............................................................................CAGACGGACAGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................................	25	20	1.35	27	0	0	0	0	0	0	0	25	2	0
.......................................................CATTAGGCGCTGAAGGGGACG............................................................................................................................................................................................................................................................................................................................	21	20	1.30	26	0	26	0	0	0	0	0	0	0	0
.......................................................................GGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................................................	20	20	1.30	26	0	0	0	0	0	0	0	0	26	0
........................................TTAT-AGTCTTTGAGCATTAGGCGCTGA....................................................................................................................................................................................................................................................................................................................................	27	20	1.25	25	0	0	25	0	0	0	0	0	0	0
........................................TTAT-AGTCTTTGAGCATTAGGCGCA......................................................................................................................................................................................................................................................................................................................................	25	20	1.20	24	0	0	0	0	0	0	0	24	0	0
.....................................................................................ACAGACGGACAGACGGACGGA..............................................................................................................................................................................................................................................................................................	21	20	1.15	23	0	3	0	0	0	0	0	0	16	4
.......................................................................GGACGGACAGACGGACAGACGGA..........................................................................................................................................................................................................................................................................................................	23	20	1.00	20	0	0	0	0	0	0	0	20	0	0
...............................................................................................................................................................................................................................................................................TCT--------TCGA-GTACCGGGTATAAA------AAGA.................................................................................	25	3	1.00	3	0	0	0	0	0	0	0	0	3	0
.......................................................................GGACGGACAGACGGACAGACGG...........................................................................................................................................................................................................................................................................................................	22	20	0.95	19	0	0	0	0	0	0	0	0	0	19
........................................................................................GACGGACAGACGGACGGACG............................................................................................................................................................................................................................................................................................	20	20	0.90	18	0	0	0	0	0	0	0	0	18	0
...............................................................................................AGACGGACGGACGGACAGACGGA..................................................................................................................................................................................................................................................................................	23	20	0.90	18	0	0	0	0	0	0	0	18	0	0
..................................................................................CGGACAGACGGACAGACGGACGG...............................................................................................................................................................................................................................................................................................	23	20	0.90	18	0	0	0	0	0	0	0	0	18	0
.......................................................................................AGACGGACAGACGGACGGAC.............................................................................................................................................................................................................................................................................................	20	20	0.90	18	0	0	0	0	0	0	0	0	18	0
..................................................................................CGGACAGACGGACAGACGGACG................................................................................................................................................................................................................................................................................................	22	20	0.85	17	0	0	0	0	0	0	0	7	8	2
.............................................AGTCTTTGAGCATTAGGCGC.......................................................................................................................................................................................................................................................................................................................................	20	20	0.85	17	0	17	0	0	0	0	0	0	0	0
......................................................GCATTAGGCGCTGAAGGGGAC.............................................................................................................................................................................................................................................................................................................................	21	20	0.80	16	0	16	0	0	0	0	0	0	0	0
.........................................................................................ACGGACAGACGGACGGACGGACAG.......................................................................................................................................................................................................................................................................................	24	20	0.75	15	0	0	0	0	0	0	0	15	0	0
.............................................................................................ACAGACGGACGGACGGACAGACG....................................................................................................................................................................................................................................................................................	23	20	0.75	15	0	5	0	0	0	0	0	10	0	0
..............................................................................................CAGACGGACGGACGGACAGACGGACA................................................................................................................................................................................................................................................................................	26	20	0.70	14	0	0	0	0	0	0	0	14	0	0
....................................................................................................GACGGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................	23	20	0.70	14	0	0	0	0	0	0	0	0	14	0
........................................................ATTAGGCGCTGAAGGGGACG............................................................................................................................................................................................................................................................................................................................	20	20	0.70	14	0	0	0	0	0	0	0	0	14	0
................................................................................................GACGGACGGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................	27	20	0.65	13	0	0	0	0	0	0	0	0	13	0
................................................................................................GACGGACGGACGGACAGACGGACA................................................................................................................................................................................................................................................................................	24	20	0.65	13	0	4	0	0	0	0	0	0	9	0
...............................................................................AGACGGACAGACGGACAGAC.....................................................................................................................................................................................................................................................................................................	20	20	0.65	13	0	0	0	0	0	0	0	0	13	0
............................................................................................................................GACATGTCTCAATCGACTCGG.......................................................................................................................................................................................................................................................	21	11	0.64	7	0	4	0	0	0	0	0	0	3	0
................................................................................................................................TGTCTCAATCGACTCGGCTATT..................................................................................................................................................................................................................................................	22	10	0.60	6	1	4	0	0	0	0	0	0	1	0
..........................................................................CGGACAGACGGACAGACGGACAGAC.....................................................................................................................................................................................................................................................................................................	25	20	0.60	12	0	0	0	0	0	0	0	0	12	0
..............................................................................................................CAGACGGACAGACAGACATG......................................................................................................................................................................................................................................................................	20	20	0.60	12	0	0	0	0	0	0	0	0	12	0
................................................................................................................................TGTCTCAATCGACTCGGCTAT...................................................................................................................................................................................................................................................	21	10	0.60	6	0	4	0	0	0	0	2	0	0	0
....................................................................AGGGGACGGACAGACGGACAGACGGA..........................................................................................................................................................................................................................................................................................................	26	20	0.60	12	0	0	0	0	0	0	0	12	0	0
....................................................................AGGGGACGGACAGACGGACAGACG............................................................................................................................................................................................................................................................................................................	24	20	0.55	11	0	0	0	0	0	0	0	0	11	0
..............................................................................................CAGACGGACGGACGGACAGACGGA..................................................................................................................................................................................................................................................................................	24	20	0.55	11	0	0	0	0	0	0	0	0	11	0
...............................................................................................................................................................................................................................................................................TCT--------TCGA-GTACCGGGTATAAA------AAG..................................................................................	24	6	0.50	3	0	2	1	0	0	0	0	0	0	0
............................................................................GACAGACGGACAGACGGACAGACGG...................................................................................................................................................................................................................................................................................................	25	20	0.45	9	0	1	0	0	0	0	0	8	0	0
.......................................................................................................GGACGGACAGACGGACAGACAGAC.........................................................................................................................................................................................................................................................................	24	20	0.45	9	0	0	0	0	0	0	0	0	9	0
....................................................................................GACAGACGGACAGACGGACGGACGG...........................................................................................................................................................................................................................................................................................	25	20	0.45	9	0	0	0	0	0	0	0	9	0	0
..............................................................................................................................CATGTCTCAATCGACTCGGCT.....................................................................................................................................................................................................................................................	21	10	0.40	4	1	2	0	1	0	0	0	0	0	0
......................................................................................................CGGACGGACAGACGGACAGACAGAC.........................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	8
...............................................................................AGACGGACAGACGGACAGACGGACG................................................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	8	0	0
.....................................................................................ACAGACGGACAGACGGACGGACGGA..........................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	0	0	0	0	0	0	0	7	0
.......................................................................................................................................................................................................CGATTCCTTCTGGACGTTACACAC.........................................................................................................................................................................	24	20	0.35	7	0	0	7	0	0	0	0	0	0	0
........................................................................................GACGGACAGACGGACGGAC.............................................................................................................................................................................................................................................................................................	19	20	0.35	7	0	0	0	0	0	0	0	7	0	0
...........................................................AGGCGCTGAAGGGGACGGAC.........................................................................................................................................................................................................................................................................................................................	20	20	0.30	6	0	0	0	0	0	0	6	0	0	0
..............................................................................................................................................................................................GAA-----ACGATTCCTTCTGGACGT................................................................................................................................................................................	21	20	0.30	6	0	0	0	0	0	0	6	0	0	0
.......................................CTTAT-AGTCTTTGAGCATTAGGC.........................................................................................................................................................................................................................................................................................................................................	23	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.........................................TAT-AGTCTTTGAGCATTAG...........................................................................................................................................................................................................................................................................................................................................	19	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..........................................................................................................CGGACAGACGGACAGACAGA..........................................................................................................................................................................................................................................................................	20	20	0.30	6	0	0	0	0	1	0	5	0	0	0
...............................................................................................................................ATGTCTCAATCGACTCGGCTA....................................................................................................................................................................................................................................................	21	10	0.30	3	0	2	0	0	0	0	1	0	0	0
..............................................................CGCTGAAGGGGACGGACAG.......................................................................................................................................................................................................................................................................................................................	19	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.........................................TAT-AGTCTTTGAGCATTAGGCGCTG.....................................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	0	0	6	0	0	0	0	0	0	0
........................................................................................................................................................TGCTGATCAAGAATATA----TATACTTTATGG...............................................................................................................................................................................................................	29	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................TAT-AGTCTTTGAGCATTAGG..........................................................................................................................................................................................................................................................................................................................................	20	20	0.25	5	0	0	0	0	0	0	5	0	0	0
...........................................................AGGCGCTGAAGGGGACGGA..........................................................................................................................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	0	0	0	0	0	5	0
...............................................................................................AGACGGACGGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	5	0
..................................................................................................CGGACGGACGGACAGACGGACAGA..............................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	5	0	0
......................................................................GGGACGGACAGACGGACAGACGGACA........................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	5	0
.........................................................................ACGGACAGACGGACAGACGGACAGAC.....................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	5
......................................................................................................CGGACGGACAGACGGACAGACAGACA........................................................................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	5	0
.....................................................................GGGGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................................................	22	20	0.25	5	0	0	0	0	0	0	0	0	5	0
................................................CTTTGAGCATTAGGCGCT......................................................................................................................................................................................................................................................................................................................................	18	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..........................................................................CGGACAGACGGACAGACGGAC.........................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................GACAGACGGACAGACAGACAT.......................................................................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................CGGACAGACGGACGGACGG...........................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	3	1	0	0	0
.............................................................................................................................................................................................................................................TCACCACAAATCTAATA-----TACCCC-TATAC.........................................................................................................................	28	20	0.20	4	0	3	0	0	0	0	0	0	1	0
..........................................................................................................CGGACAGACGGACAGACAGACAT.......................................................................................................................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	4	0	0
........................................................................................................................................TCGACTCGGCTATTGATGCTGATC........................................................................................................................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................AATCGACTCGGCTATTGATGC.............................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	4	0	0	0
........................................TTAT-AGTCTTTGAGCATTAGGCGCTGAAG..................................................................................................................................................................................................................................................................................................................................	29	20	0.20	4	0	0	0	0	0	0	0	0	4	0
...............................................................................................................................ATGTCTCAATCGACTCGGCT.....................................................................................................................................................................................................................................................	20	10	0.20	2	0	1	0	1	0	0	0	0	0	0
..................................TAGCTCTTAT-AGTCTTTGAGCAT..............................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	4	0
...................................................................AAGGGGACGGACAGACGGACAGACGGA..........................................................................................................................................................................................................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	4	0	0
..........................................................................CGGACAGACGGACAGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................................	29	20	0.20	4	0	0	0	0	0	0	0	4	0	0
............................................................................................................GACAGACGGACAGACAGACA........................................................................................................................................................................................................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...............................................................GCTGAAGGGGACGGACAGA......................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................ACGGACAGACGGACAGACAGA..........................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	4	0	0	0
.............................................................................................................................................................................................................................................TCACCACAAATCTAATA-----TACCCC-TATA..........................................................................................................................	27	20	0.20	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................TGTCTCAATCGACTCGGCTATTG.................................................................................................................................................................................................................................................	23	10	0.20	2	0	1	0	0	0	0	0	0	1	0
................................................................................................................................TGTCTCAATCGACTCGGCTA....................................................................................................................................................................................................................................................	20	10	0.20	2	0	1	0	0	0	0	1	0	0	0
.............................................................................................................ACAGACGGACAGACAGACATGT.....................................................................................................................................................................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................ATGCTGATCAAGAATATA----TATACT.....................................................................................................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................CATGTCTCAATCGACTCGGC......................................................................................................................................................................................................................................................	20	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................ACAGACATGTCTCAATCGACT..........................................................................................................................................................................................................................................................	21	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................ACATGTCTCAATCGACTCGGC......................................................................................................................................................................................................................................................	21	11	0.18	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................ATGTCTCAATCGACTCGGC......................................................................................................................................................................................................................................................	19	11	0.18	2	0	1	0	0	0	0	0	0	1	0
............................................................................GACAGACGGACAGACGGACA........................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................ACGGACGGACGGACAGACGGACAGACA............................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.........................................TAT-AGTCTTTGAGCATTAGGCGCTGAA...................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	3	0	0
..........................................................................................................................................................................................................TTCCTTCTGGACGTTACACACAT.......................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.................................................TTTGAGCATTAGGCGCTGAAG..................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0
.............................................................................ACAGACGGACAGACGGACAGACGGA..................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.....................................................................................................ACGGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.................................................................................ACGGACAGACGGACAGACG....................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATATA----TATACTTTATGGGGTC...........................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	3	0	0	0	0
........................................TTAT-AGTCTTTGAGCATTAGGCGA.......................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0
.........................................TAT-AGTCTTTGAGCATTAGGCGCTGA....................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.......................................................CATTAGGCGCTGAAGGGGACGGA..........................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.....................................................................................ACAGACGGACAGACGGACG................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...........................................................................................................................................................................................TCGGAA-----ACGATTCCTTCTGGACGTT...............................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.................................................................................................................................GTCTCAATCGACTCGGCTATT..................................................................................................................................................................................................................................................	21	20	0.15	3	0	1	0	1	0	0	1	0	0	0
....................................................................AGGGGACGGACAGACGGACAGACGT...........................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...........................................................................................................................................................................................................TCCTTCTGGACGTTACACACATA......................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
..................................................................GAAGGGGACGGACAGACGG...................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................GGGGACGGACAGACGGACAGACG............................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.............................................................................ACAGACGGACAGACGGACAG.......................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	2	0	0	0	0	1	0	0	0
.................................................................................................................................................................................CTTTATGGGGTCGGAA-----ACGAT.............................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0
......................................TCTTAT-AGTCTTTGAGCATTAGGCGCT......................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	3	0	0
..............................................................................................................................CATGTCTCAATCGACTCGGCTA....................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TACTTTATGGGGTCGGAA-----ACG...............................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................AGACAGACATGTCTCAATCGA............................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.....................................................................GGGGACGGACAGACGGACAGACGT...........................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0
....................................................GAGCATTAGGCGCTGAAGG.................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	2	0	0	0
.........................................................................................................ACGGACAGACGGACAGACAGACA........................................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	0	0	0	0	0	0	1
.....................................................................................................................................................................TATA----TATACTTTATGGGGTCGGAA-----AC................................................................................................................................................................................................	26	20	0.10	2	0	1	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................TCCTTCTGGACGTTACACACATAC.....................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.....................................................................................ACAGACGGACAGACGGACGGAC.............................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................TCGGAA-----ACGATTCCTTCTGGA...................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................CAGACGGACGGACGGACAGACGGACAG...............................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................GACAGACGGACAGACAGA..........................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	2	0	0	0	0	0
...............................................................GCTGAAGGGGACGGACAGACGGA..................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................TCTTTGAGCATTAGGCGCTGAAG..................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................TGCTGATCAAGAATATA----TATACT.....................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	2	0	0	0	0	0	0
................................................................CTGAAGGGGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0
......................................................................................CAGACGGACAGACGGACG................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.............................................AGTCTTTGAGCATTAGGCGCT......................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0
.........................................................................ACGGACAGACGGACAGACGGACA........................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.......................................................CATTAGGCGCTGAAGGGGACGGAC.........................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................GGACGGACAGACGGACAGACAGACA........................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..............................................GTCTTTGAGCATTAGGCGCT......................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	2	0	0	0	0
................................................................................................GACGGACGGACGGACAGACGGACAGACA............................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.................................................TTTGAGCATTAGGCGCTGAAGGGG...............................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TCACCACAAATCTAATA-----TACCCC-TA............................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................GACGGACAGACGGACAGACGGACAG.......................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	2
..............................................................................CAGACGGACAGACGGACAGA......................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.......................................CTTAT-AGTCTTTGAGCATTAGGCGCTGA....................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..............................................................................CAGACGGACAGACGGACAGACGGA..................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0
......................................................................GGGACGGACAGACGGACAGACGGACAG.......................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................................................CATGTCTCAATCGACTCGG.......................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................GACAGACATGTCTCAATCGAC...........................................................................................................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................AGACATGTCTCAATCGACTCGG.......................................................................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................GACATGTCTCAATCGACTCGGC......................................................................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................ACATGTCTCAATCGACTCG........................................................................................................................................................................................................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TCT--------TCGA-GTACCGGGTATAAA------A....................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CC-TATACTCT--------TCGA-GTACCGG..................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................GTCTCAATCGACTCGGCTATTGATGC.............................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................GACGGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TACTCT--------TCGA-GTACCGGGTA...............................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................CGGACGGACAGACGGACAGACAGACAT.......................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...................................................TGAGCATTAGGCGCTGAAGGGGACGG...........................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................TCACCACAAATCTAATA-----TACCCC-TAT...........................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.......................................................................GGACGGACAGACGGACAGACGGACAG.......................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................TTAT-AGTCTTTGAGCATTAGGCGCTGAG...................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TCGACTCGGCTATTGATGCTGATCAAG.....................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................ACGGACGGACAGACGGACAGACAGA..........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................CGGAA-----ACGATTCCTTCTGGAC..................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................TCTCAATCGACTCGGCTATT..................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................GAAGGGGACGGACAGACGGACAGACGG...........................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................TGAAGGGGACGGACAGACGGACAGA..............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................GACAGACGGACGGACGG...........................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...............................................TCTTTGAGCATTAGGCGCTGAAGG.................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..........................................................TAGGCGCTGAAGGGGACGGACAGACGG...................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..................................................TTGAGCATTAGGCGCTGAAGGGGAC.............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................TTAT-AGTCTTTGAGCATTAGGC.........................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...................................................TGAGCATTAGGCGCTGAAGGGGA..............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................CGGACAGACGGACAGACGGACAG.......................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..........................................................................CGGACAGACGGACAGACGGACAGACGG...................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................ACGGACGGACAGACGGA..................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................TCTCAATCGACTCGGCTATTG.................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................GGACAGACGGACAGACAGAC.........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................AGACGGACGGACGGACAGACGG...................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................CGGACAGACGGACGGACGGA..........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...............................................................................AGACGGACAGACGGACAGACGGA..................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..........................................AT-AGTCTTTGAGCATTAGGC.........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................TCTGGACGTTACACACATACA------..............................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................GGACAGACGGACAGACGGACAGACG....................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................................................GACGGACAGACGGACAGACGGACAGA......................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................................................GACGGACAGACGGACAGACGGACAGAA.....................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................GATTCCTTCTGGACGTTACACACATA......................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...................................................................AAGGGGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................A----TATACTTTATGGGGTCGGA........................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...................................................................AAGGGGACGGACAGACGGACAGACG............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................ATA----TATACTTTATGGGGTCGGAA-----AC................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................TGATCAAGAATATA----TATACTTTATG................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................GACAGACGGACGGACGGACAGAC.....................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................CTAGCTCTTAT-AGTCTTTGAG.................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
........................................................ATTAGGCGCTGAAGGGGAC.............................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................................................................ACAGACGGACAGACGGACAGACG....................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................TCACCACAAATCTAATA-----TACCCC-T.............................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................CTGAAGGGGACGGACAGA......................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................AGACGGACGGACGGACAGACG....................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................TCTTAT-AGTCTTTGAGCATTAGGCGCTG.....................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TCTGGACGTTACACACATA......................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATACTTTATGGGGTCGGAA-----AC................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................TA-----TACCCC-TATACTCT--------TCGA-G........................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................ACGGACGGACAGACGGACAGACAG...........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..............................................................................CAGACGGACAGACGGACAGACGGACG................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................................................CGGACAGACGGACAGACGGA..................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
............................................................................................GACAGACGGACGGACGGACAGACG....................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................ACAGACGGACGGACGGACAG.......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................AGGGGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................ATTGATGCTGATCAAGAATAT................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.................................................................................ACGGACAGACGGACAGAC.....................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................GCTGATCAAGAATATA----TATACTTTA..................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...............................................................................AGACGGACAGACGGACAG.......................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................TTGAGCATTAGGCGCTGAAGG.................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................GGACAGACGGACGGACGG...........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................TATACTCT--------TCGA-GTACCGG..................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTCCTTCTGGACGTTACACACA........................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................CGGACGGACAGACGGACAGAC.............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.................................................................................ACGGACAGACGGACAGACGGACGGACGGA..........................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	1	0
....................................................................................GACAGACGGACAGACGGACGG...............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1
............................................................GGCGCTGAAGGGGACGG...........................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.........................................................TTAGGCGCTGAAGGGGAC.............................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0	0	0	0
........................................................ATTAGGCGCTGAAGGGGACGG...........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
............................................................................GACAGACGGACAGACGGAC.........................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	1
....................................................................................GACAGACGGACAGACGGACGGTT.............................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
....................................GCTCTTAT-AGTCTTTGAGCATTAGGCGC.......................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................GACGGACAGACGGACAGACGGACAGACG....................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..........................................................................CGGACAGACGGACAGACG............................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................GACGGACAGACGGACAGACAG...........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................ACAGACGGACAGACGGACAGACGGG..................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................TGAAGGGGACGGACAGACGGAC.................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

TT----------------------------GCTCTAGCTTTTAT-AGTCTCGGAGAACTAGGCGCTCATAGG----------------------------------------GACGGACAGACAGTCATGGCTCAATCAACTCGGCTATTGATGCTGATCAAGAATATG----TACACTTTATGGGGTCGGAA-----AAGCTTCCTTCTGGACGTTACACACATCCA------CTTTCACCACAAATCTAATA-----T-----------------------------------------------------------------------------------------TGTATATGTTGTATATCACAA--A-GCGCTTGACTGAA--AAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................AT-AGTCTCGGAGAACTAGGCGCTCA....................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
.........................................TAT-AGTCTCGGAGAACTAGGCG........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................GGACGTTACACACATCCA------CTT...........................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................ACGTTACACACATCCA------CTTTCACCACA...................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................TCTGGACGTTACACACATC......................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0
........................................................................................................................................................................................................................TACACACATCCA------CTTTCACC......................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droWil2

CTATAGCAGTCTACGTTCAAAAT-TTGGTGACTCTAGCTGTTAT-AGTCTCCGAGACTTTGATGTTCATACAG------------------------ACGGACATGCGAA-------------------GGGACGATCGG-ACGGCTGTTGATGCTGATCAAGAATATATATATATACCTTATGGTGTCGAAA-----AAACTTTCT-------ATTACATACATTTT-------------GGCGCCTTTAATA-----TACTAC-TTTATCCC--------ATTAGTTACATGGTATAAAAAATGAAA-----------CGAA------------AAATACG--ACAGAAA------------T--GAA--G-AGGCCCACAAAGA--AGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................GTTCATACAG------------------------ACGGACATGCGA...........................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	1	0	0
..........................................................................................................CGAA-------------------GGGACGATCGG-ACGGCTG....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................GTTCATACAG------------------------ACGGACATGCGAA-------------------GGGAC..................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.................................................................................................................................GGGACGATCGG-ACGGCTGTTGAT...............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.................................................................................................................................GGGACGATCGG-ACGGCTGTTGATGC.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.............................................................................................................A-------------------GGGACGATCGG-ACGGCTGTTGATGCT............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................AAAAATGAAA-----------CGAA------------AAATACG--ACAGAA.........................................	27	1	1.00	1	0	0	1	0	0
.......................................................................................................ATGCGAA-------------------GGGACGATCGG-ACGG.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
......................................................................................................................................................GATGCTGATCAAGAATAT................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................T-------ATTACATACATTTT-------------GGCG...................................................................................................................................................	19	20	0.05	1	0	1	0	0	0

droVir3

GA---GCAC-CTACATCTA--AAA-TT---TCTCTAGCTCTTAT-AGGTTCTGAGACCCTTGCGTTTATACAA------------------------ACGGACAGACGAACAGACAGACAGACGGACATGGCTAGATCGACTCGGCTATTGGTGCTGATCAAGAATATA----TTTAATTTATGGGGTCGGAG-----ATGCTTCCTTCTGCCTGATACATACATTTG-GATTT-------TACACACACAATA-----TACCCT-TATTTTTA--------ATGG-GTTCAGAGTACAAA------ATTAAT-------------------------------------CT--------TAATTTTCTATAT-TCATCAATAAATA--CAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................TACCCT-TATTTTTA--------ATGG-GTTCAGAGT................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................................................CAAGAATATA----TTTAATTTATGGGGTCG..........................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAAGAATATA----TTTAATTTATGGGGTC...........................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GTGCTGATCAAGAATATA----TTTAATTTA..................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TAT-AGGTTCTGAGACCCTTGCGTTT.....................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCGACTCGGCTATTGGTGCTG...........................................................................................................................................................................................................................................	21	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTAT-AGGTTCTGAGACCCTTGC.........................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TAT-AGGTTCTGAGACCCTTGCGTT......................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTAT-AGGTTCTGAGACCCTTGCGT.......................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACATTTG-GATTT-------TACACA.................................................................................................................................................	19	19	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................ATTTTTA--------ATGG-GTTCAGAGTA...............................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................TAGATCGACTCGGCTATTGGTG..............................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GTCGGAG-----ATGCTTCCTTCTGC....................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CTAGATCGACTCGGCTATTGGTGCTG...........................................................................................................................................................................................................................................	26	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TACATCTA--AAA-TT---TCTCTAGCTCT...............................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CTAGATCGACTCGGCTATTGGTGCTGAT.........................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGATCGACTCGGCTATTGGTGC.............................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................ACAGACAGACAGACGGACATGG.....................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........C-CTACATCTA--AAA-TT---TCTCTAGCTCT...............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TATGGGGTCGGAG-----ATGCTTCCTTC.......................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CTATTGGTGCTGATCAAGAATATA----...........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GACGGACATGGCTAGATCGACTCGGCTA....................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCGACTCGGCTATTGGTC..............................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATTTATGGGGTCGGAG-----ATGCTTCCTT........................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CAC-CTACATCTA--AAA-TT---TCTCTAGCTC................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGGGGTCGGAG-----ATGCTTCCTTCTGCC...................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTAGCTCTTAT-AGGTTCTGAG.................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGACGGACATGGCTAGATC..............................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................A--AAA-TT---TCTCTAGCTCTTAT-AGG........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................T---TCTCTAGCTCTTAT-AGGT.......................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TATGGGGTCGGAG-----ATGCTTCC..........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGATCGACTCGGCTATTGGTG..............................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTCCTTCTGCCTGATACACC..........................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................T---TCTCTAGCTCTTAT-AGGTTCTGAG.................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TATGC-------ATGCCA--AAT-TTCAGCTCTCTAGCTCTTAT-AACTTCTGAGATCGACGCACTCATACGG------------------------ACGGACGGACGGACGGACGGACAGACGGACAGGGCTATATCGACTCAGCTCGTCGCGCTGATCAAGAATATA----TATACTTTGTGGGGTCTGCC-----ACGCCTCCTTCTGCCCGTTACATACTTTTT-------------CACAAAACCATTA-----TACCCT-GATTTCCC-ATTTTCAATGG-GTTCAGGGTATAAA------AAAAA-------------------------------------TAC--------AAA-ATACAA--A-AT----ACAAAAT--AAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................TTTTT-------------CACAAAACCATTA-----TACCCT-G.............................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.................................................TCTGAGATCGACGCACTCATACGG------------------------ACGG...................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
........................................TTAT-AACTTCTGAGATCGAC...........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...................................................................ATACGG------------------------ACGGACGGACGGACG........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droGri2

TC---------AA-------AAT-TTGAAGTCTCTAGCTCTTAA-AGTCTCTGAGATCTGCGTGTTCATACA------------------------------------AACAGACGGACAGACGGACATGGCTATATCGACTCGGCTGTTGACCCTGATCAAGAAAATA----TATACTTTATCGGGTCGGAG-----TTGCTTCCTTCTGCCAGTTACATACATATG-------------CACAAAACCATTA-----TACCCT-TTTTCAACAATTTTTAATGG-GTTCAGGGTATACA------AATGGGTAGCGAGAAAG-------------------------AAC--------TGAAACACAC--A-AGACTTCCATA----ATA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_7644

2r:2484793-2484942 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.0	-25.7	-25.7