ID:

dsi_7642

 Coordinate:

3l:1134959-1135233 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-75.9 -75.9 -75.8

Flybase annnotation

exon [3l_1135234_1135468_-]; CDS [3l_1135234_1135318_-]; CDS [3l_1134075_1134958_-]; exon [3l_1133989_1134958_-]; intron [3l_1134959_1135233_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGTTACAGAACGGTGAGTCGAGTTGGATTTCCCAGAGATCCCACAGATAACAATACGTGCCATGTGCAAATGACCTTCAGCAGAACGGTGCCGAACTTTCCACAGCCGGTTTTCGGTGGGTTCTGCGCTCTGTGTTTTTTGTTTTGTGCTTGCTGTTTTCATTGAGCAAATCCCAAACAGAAACAGAAACATATGATTGGCGGCGGAGCTTTTGCTCAGCTTTTGCCATATCTCGTCTAGATGGAGGTCGAGATAAAGCTCTAACGGTTACCCTCCCTCTCCCACAGTTATACAGGGTGCCCTGGCCGCCAACTTCGCCAATGTGGACGTCAGTGTG
**************************************************...((.((((..(((((((...)))))))((((....((.....))....))))....(((...)))(((((((..(((((((....((......))..))))))).)))))))..(((((...((((((((.....(((((..........))))).....)))))))))))))..........(((((((.((((....)))).)))...))))...)))).))(((.(((((((((((......)))..)))....))))).))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 O002
Head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
........................................................................................................................................................................................................................................................................................................................................................CGCCAACTTCGCCAATGTGGAC......... 22 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
...............................TTGTCGGAGTTACAGAAC...................................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................ATTGTCGGAGTTACAGAAC...................................................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
....................ACGTGCCCCCATTGTCGGA................................................................................................................................................................................................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................TGCAAATGACCTTCAGCAGAACG.......................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................CAGAACGGTGCCGAACTTTCC............................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........AGCCGCTGTACGTGCCCCCATTGTCGGA................................................................................................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................ATTGTCGGAGCTACAGAGCGG.................................................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................AACGGTGCCGAACTTTCCAC.......................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................GTACGTGCCCCCATTGTCGGA................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....GAGGAGAAGCCGCTGTACGTGCCC........................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................ATGACCTTCAGCAGAACGGTGCCGAAC................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................GTACGTGCCCCCATTGTCGGAGT.............................................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................TGCCCAACTTTCCAAAGCCGGC................................................................................................................................................................................................................................... 22 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0
....................................................................................................................AGTAGAACGTTGCCGGACTT............................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...........................................................GTTGGATTCCCGAGACATCC........................................................................................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0
............GCCGAGGTACGAGCCCCCA........................................................................................................................................................................................................................................................................................................................................................ 19 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0
..........................................ACTGTACGGTGAGCCGAGT.......................................................................................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................GTCGAGAAAAACCTCTAGC........................................................................ 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TCTGTTTTGTGCCTGCTGTG.................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................GGTAGGTTCTGCGCC................................................................................................................................................................................................................ 15 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................................CCTGGTCGCGAACTTAGC................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................CTTTTGCTCAAGTGTTGCCA............................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GAAGCTCCTCTTCGGCGACATGCACGGGGGTAACAGCCTCAATGTCTTGCCACTCAGCTCAACCTAAAGGGTCTCTAGGGTGTCTATTGTTATGCACGGTACACGTTTACTGGAAGTCGTCTTGCCACGGCTTGAAAGGTGTCGGCCAAAAGCCACCCAAGACGCGAGACACAAAAAACAAAACACGAACGACAAAAGTAACTCGTTTAGGGTTTGTCTTTGTCTTTGTATACTAACCGCCGCCTCGAAAACGAGTCGAAAACGGTATAGAGCAGATCTACCTCCAGCTCTATTTCGAGATTGCCAATGGGAGGGAGAGGGTGTCAATATGTCCCACGGGACCGGCGGTTGAAGCGGTTACACCTGCAGTCACAC
**************************************************...((.((((..(((((((...)))))))((((....((.....))....))))....(((...)))(((((((..(((((((....((......))..))))))).)))))))..(((((...((((((((.....(((((..........))))).....)))))))))))))..........(((((((.((((....)))).)))...))))...)))).))(((.(((((((((((......)))..)))....))))).))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
.........................................................................................................................................................................................................................................................................................................................GGAGATGGTTTCAATGTGTCCC........................................ 22 3 1 4.00 4 4 0 0 0 0 0 0 0 0
...................................................................................................................................TTGAAAGGTGTCGGCCAAAAGCCAC........................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................CTTGCCACTCAGCTCAAC........................................................................................................................................................................................................................................................................................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................CGGCTTGAAAGGTGTCGGC..................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................CAACCTAAAGGGTCTCT........................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................TGTCTTGCCACTCAGCTCAACC....................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................GGCTTGAAAGGTGTCGGCCAA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................ACAGCCTCAATGTCTTGCCA................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................GGTAACAGCCTCGATGTCTT....................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................TTGCCACGGCTTGAAAGGTGT......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................GTCTTGCCACGGCTTGAA............................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................CTCGATGTCTTGCCACTCA............................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GAGATGGTTTCAATGTGTCCC........................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GGGAGATGGTTTCAATGTGTCC......................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................TGCCACGGCTTGAAAGGTG.......................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................GGAGATGGTTTCAATGTGTCC......................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GCCGGCTCGAAAACG.......................................................................................................................... 15 1 9 0.44 4 0 0 1 3 0 0 0 0 0
.................................................................................................GGTACACGTTCACGGCAAGT.................................................................................................................................................................................................................................................................. 20 3 10 0.40 4 3 0 0 0 1 0 0 0 0
...............................................................................................................................CGGCTTGAAAGGTCT......................................................................................................................................................................................................................................... 15 1 8 0.38 3 0 0 0 0 0 0 3 0 0
.........................................................................................................................................................................................................................................................................................................................GGGGATGGTGTCAATATG............................................ 18 2 3 0.33 1 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................................................................................GGTGTCAATATGTTC......................................... 15 1 3 0.33 1 0 0 1 0 0 0 0 0 0
..................................................................................................................TGTCGTCTTGCCACGG..................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................CCACCATAGACGCGAGA.............................................................................................................................................................................................................. 17 2 13 0.31 4 0 0 0 4 0 0 0 0 0
..............................................................................................................................................................................................................................................GCCGGCTCGAAAACGA......................................................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................CGGATTGAAAGGTGT......................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................AAGCGACCATAGACGCGAGA.............................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................AAGTAACTAGTGTAGGGT.................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................AATTGCCAAAGTGAGGGAGA......................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................CCGGCTCGAAAACGACTC...................................................................................................................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................AGATGGTTTCAATGTGTCC......................................... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0
.AAGCTCCTCTTCGTCG...................................................................................................................................................................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................GCCGGCTCGAAAACGCG........................................................................................................................ 17 2 15 0.07 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................GAAAGGTTTAGGCTAAAAGC.............................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................CGGCGTGAAAGGTCTCG....................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................ACCAAAGACGCGAGA.............................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................CTGTCGGTTGAAGCGGTGA............... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................ACGGTTACTGGTAGTCGT............................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:1134909-1135283 - dsi_7642 CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGTTACAGAACGGTGAGTCGAGTT-----GG---------------------------------------------------------ATTTCC----------CAGAG-----ATCCCACAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCAGAACGGTGC------CGAACTTTCCA------CAGCCGGTTTTC-GGTGGGTTCTG-CGCT--------------------------------C--TGTG-------TTTTTTGTTTTGT-------G-CTT-GCTGTTTTCATT----GAGCAAATCC-CAAACAGAAACA-GAAACATATGATT-GG------CG-GCG-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------CGG-TTA-------------------------------------------------------------------C--CCTCCCTCT---CCCACAGTTATACAGGGTGCCCTGGCCGCCAACTTCGCCAATGTGGACGTCAGTGTG-----
droSec2 scaffold_2:1196965-1197339 - CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGCTACAGAACGGTGAGTCGAGTT-----GG---------------------------------------------------------ATTTCC----------CAGCG-----ATCCCACAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCAGAACGGTGC------CGAACTTTCCA------CAGCCGGTTTTT-GGTGGGTTCTG-CGCT--------------------------------C--TGTG-------AT-TTTGTTTTCT-------G-CTT-GCTGTTTTCATT----GAGCAAATCCCAAAACAGAAACA-GAAACATATGATT-GG------CG-GCG-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------CGG-TTA-------------------------------------------------------------------C--CCTCCCTCT---CCCACAGTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGGACGTTAGTGTG-----
dm3 chr3L:1204237-1204604 - CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAACGGTGAGTCGAGTT-----GG---------------------------------------------------------ATTTCC----------CAGCG-----ATCCCGCAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCAGAACGGTGC------CGAACTTTCCA------CAGCCGGTTTTC-GGTGGGTTCTA-CGTT--------------------------------C----------------TGTGTTTTTT-------G-TTT-GCTGTTTTCATT----GAGCAAATCT-CAAACAGAAACA-GAAACATATGATT-GG------CG-GTG-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------TGG-TTA-------------------------------------------------------------------C--CCTACCTCT---CTCACAGTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGTG-----
droEre2 scaffold_1383:372-738 - CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGCTACAGAACGGTGAGCCGCCTT-----GG---------------------------------------------------------G-TTCC----------CAGCG-----ATCCCACAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCGGAACGCT-C------CGAACTTTCCA------CAGCCGGTTTTC-GGTGGCTTCTC-CGCT--------------------------------C--TGCGTTCTGCGTTCTGTGTTCTAT-------G-TTT-GCTGTTTTCATT----GAGCAG-CCC-CA------AACA-GAAACATATGACT-GG------TG-CTG-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TAGC-----TGGTCTCGATGG-AGGTC-GCGATAAAGCTC---TAA------TGG-T-G-------------------------------------------------------------------------CCCTCT---C-CCCAGTTATACAGGTTGCCCTGGCCGCCAACTTCGCCAATGTGGATGTCAGTGTG-----
droYak3 3L:1169077-1169465 - CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGCTGCAGAACGGTGAGCCGAGTTG-CTTGG---------------------------------------------------------ATTTCC----------CAGCG-----ATCCCAGAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCAGAACGGTGC------CGAACTTTCCA------CAGCCGGTTTTC-GGTCACTTCTG-CGTT----CTATGTT---------------------C--TGTG-------TTTTCTGTTTTGTGATTGCCA-TTT-GCTGTTTTCATT----GAGCAGATCC-CAAACAGAAACA-GAAACATATGACT-GT------TC-CCA-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----TCGTGTAGATGG-AGGTC-GCGATAAAGCTC---TAA------TCA-TTG-------------------------------------------------------------------------CCCTCT---CCCGCAGTTATACAGGGTGCCCTGTCGGCCAACTTCGCCAATGTGGATGTCAGTGTG-----
droEug1 scf7180000409007:27639-28033 - CTTCGAGGAGAAGCCGCTCTACGTGCCCCCATTGTCGGAGCTACAGAACGGTGAGCCGAGCT-----GAGTTTCC--C--------------------A------------------------CAGAT--CC----------CACAG-----ATCTGAGAGATAAC----------------------------------------------AATA---CGTGCAATATTCG----C--CCGAGTGC-----------------------------------CATGT-GCAAATGACCTT-CA---GAACAGTGC------CGAACTTTCCA------TAGCCGGTTTTT-GGTCGGTTCTC-TGTT--------------------------------C--TCAGTACTGAGTTCTGTGTTTTTT-------G-CTT-TTTGTTTTCATT----GAGCTG-TCC-GA------AACA-GAAACATATGATT-GG------GC-GCG-GAGCTTTT-G----GCTAGCTTTT-GCCA------------TATG-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------TGCGTT-------------------------------------------------------------------------TCTCTCT---CCTCCAGTTATACAGGGTGCCCTAACGGCCAACTTTGCCAGTGTGGATGTCAGTGTG-----
droBia1 scf7180000300910:1303587-1303987 - CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGCTGCAGAACGGTGAGTGCCGAG---------TTCC--C--------------------AGAGGTTCCAGACTCGAGATTCTA----G---A-GCCGAGACCC--GCG-----ATCCCAGAGATAAC----------------------------------------------AATA---CGTGCCGTTTGGG----CCCCCGA--GG-----------------------------------CGTGT-GCAAATGACCTT-CAGAAGAACAGTGC------CGAACTTTCCA------TAGCCGGTTTTG-GGTCGGTACTG----------------------------------------------------------TTTT-T-------A--TT-TCGGTTTTCATT----GAGCAA-TCC-AA------AGC--AAAACATATGATT-GG------GC-CGA-AAGCTTTT-G---GCGCAGCTTTTCGCTA------------TGTG-----TCGTCCAGATGG-AGGTC-GAGATAAAGCTC---TAA------TGG-GTGT---------CT-------------------------------------------------------C--CTCTCCGC----TCTCCAGTCATACAGGGTGCGCTGACCGCCAACTTCGCCCAGGTGGACGTGAGTGTG-----
droTak1 scf7180000414671:151643-151921 - CTTCGAGGAGAAGCCACTGTATGTGCCCCCATTGTCGGAGTTGCAGAAAGGTGAGTTCT------------------C-----------AGAGTTCCCAGAG-------ACTTGGGATTCTA----GCTTAA----------CAGAG-----ATCCCAGAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATATAGCAAATGACCTT-CAGAAGAACGGTGC------CGAACTTTCCA------TAGCCGGTTTTTCGGTTGGTTCTA-GGTT--------------------------------TTTTATG-------TTTTGTGTTTTGCGTTTGGAG-TTTCTCTGTTTTCATT----GAGCAA-TCC-AA------AACACTAAACATATGATT-GA------AC-CTA-GAGCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491249:4437477-4437825 + CTTCGAGGAGAAACCACTCCATGTGCCGCCACTCTTAGAACTACAAAAGGGTGAGCATTACT-----GA---------------------------------------------------------ATGAAG----------CATTG-----AT---------AAA-------------A----ATACACAGAAAC----------------AAAA---TGTATTAAATATGA-----------CAC-----------------------------------TTTTT-CGAAATAATATTTCA---TATCAACAC------TGAA------A------AAATCGATTGTT-GATTGATACAA--ATT--------------------TAGTATTGCTTAC---------TTTTTT-------TTTT-------AAT----TTGGTCTGATC----AAA---------------------------------T-GG------TG-TCA-AAGAATA----------------------------------------------------------------------------------------------------------CC--ATTCTTTTTTTTCCTGTGTTGATCTCGCCTAGCTGTGTTCTCAGATAATGCTTT-TTCTTGC---CCTTTAGTTATACAGGGTGCTCTGAATGCCAACTTTGCCTCAGTTGATGTTAATGTG-----
droRho1 scf7180000779696:163297-163705 + CTTCGAGGAGAAGCCTCTTTATGTGCCCCCATTGTCGGAACTGCAGAACGGTGAGCCAAGCTGACTCTG---------------------------------------------------------ATTTCC----------AAGAG-----ATCCGCGAGATAAC----------------------------------------------AATA---CGTGCCATATTCG----CT-CCGAGTGC-----------------------------------CATGT-GCAAATGACCTT-CA--AAAACGGTGC------CGAACTTTCCA------TAGCCGGTTTTC-GGTCGGTTCTG--------A----CGTTTCA-----TTGTA-------C--TGTGTACTGTGTT-------TTGTGTTTGGCG-TTT-TCTGTTTTCATT----GAGCAG-TCC-AA------AACA-GAAACATATGATT-GG------GCCGAAAAAGCTTTCTG---GCATAGCTTTT-GCTA------------TATG-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTT---TAA------TGG-ATT-------------------------------------------------------------------T--CTCTCTTCT---CCTCCAGTTATACAGGGTGCCCTGACCGCCAACTTTGCCAAAGTGGACGTGAGTGTG-----
droFic1 scf7180000454113:880210-880635 + CTTCGAGGAGAAGCCCCTGTATGTGCCCCCATTGTCGGAGCTGCAGAACGGTGAGTTGAGAT---TCTG---------------------------------------------------------AGTTCC----------CACCG-----ATCCGAGAGATAAC----------------------------------------------AATA---CGTGCTGTATTCTGGGGTTCTCGAGTGC-----------------------------------CATGT-GCAAATGACCTT-CA---CAACGGTGC------CGAACTTTCCA------TAGCCGGTTTTT-GGTCGCTTCTC------------AGTACT-------GAGTTCTACGTTC----------------TTTATTTTCT-------A-TTT-TTTGTTTTCATT----GAGCAG-TCC-AA------AACA-GAAACATATGATT-GG------GC-CGA-AAGCTTTGGG---GGCCAGCTTTT-GCCA------------TATG-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------TTCATTGCCTCCCCTCC---TCTCTCTCTCTC-------------------------------------------TCTCTCTCACTCTCTCTCCAGTTATACAGGGTGCCTTGAGCGAGAACTTTGCCAGTGTGGACGTGAGTGTG-----
droKik1 scf7180000302329:368051-368486 + CTACGAGGAGAAGCCCCTGCATGTGCCCTCATTGCCGGAGCTGCAGAACGGTGAGCAGCGTT-----AA-----------------------------------------------------GCCGATTTCC----------CA--G-----ATCCGCCAGATAAC----------------------------------------------AATA---CGTGCTGTATT-----------GAGAGCTCTGTGCTGTGTGCTCTGTTCCGTGTTCTGTGTTCTGGGAGCCGAATGACCTT-CA---GAACTGTGCCATAGCCAAACTTTCCA------TAGCCGGTTTTC-GCTCAGTTCTG-T----------------------------------------T-------GATTTGTGTTTTCT-------G-ATT-TCTGTTTTCATT----GCGCGA-ACT--A------AACA-CAAACATATGATTTTG------GC-CGA-GAGCTTTT-G---GGGCAGCTTTT-GGCACTCGGACGCCTATATGTTTTACTGTCCAGATGG-AGGTC-GAGATAAAGCTCCACTAA------CAG-TTT-------------------------------------------------------------------G--CTCTCCTCT---CCCGCAGTGATACAGGGTGCCCTGAATGGCAACTTCGCCCAGGTGGAAGTCAGCGTG-----
droAna3 scaffold_13337:6709839-6710171 + CTTCGAGGAGAAGCCTCTGTATGTGCCCCCATTGTCGGAGCTGCAGAATGGTGAGTGT---------GAATTTCCGCGACAATTTCCCGAG-----------------------------------ATTTCC----------CATC-CCGAGA---GAGAGATAAC------------------ATATAGCCATAGATCCATAGCCACTGAAAAAA---CGTGCCAGCTTCGG-----------TGC---------------------------------TTCATGA-GCAAATGACCTT-CA---GAACTGTGC------CGAACTTTCCA------TAGCCGGTTTTG-GTCCG------AGGTTCTTA----CGATT--CTGTT-------------------TGC--TGCTCAGTGTTTTTG-----GTC-GTT-TCTGTTTTCATT----GAGCAG-TCT--A------AACA-CAAACATATGATT-TC------AC-TGA-GAGCTTTT-GATTACTTAGCTTTG-GCTA------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396709:441080-441388 + CTTCGAGGAAAAGCCCCTGTATGTGCCCCCATTGTCGGAGCTGCAGAATGGTGAGTGT---------GA---------------------------------------------------------ATTTTC----------CACAT-----TTCCCAGAGAGAGAGATACTTGGCGAGATAACATATAGCCACAG----------------AAAA---CGTGCCAGCTTCGG-----------TGC---------------------------------TTCATGA-GCAAATGACCTT-CA---GAACTGTGC------CGAACTTTCCA------TAGCCGGTTTTG-GTCCG------AGGTTCTTA----CGATT--CTGTT-------------------TGC-------AGTGTTTTTG-----GTC-GTT-TCTGTTTTCATT----GAGCAG-TTC--A------AACA-CAAACATATGATT-TC------AC-TGG-GAGCTTTT-GATTAGTTAGCTTTG-GCTA------------CACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group8:924081-924507 + CTTCGAGGAGAAGCCGCTCCACGTGCCCCCATTGCCGGAGCTGCAGAATGGTGAGCGACGGG-----GA---------------------------------------------------------------GCGGGGAGATC--AG-----ATCTTAAAGATAAA----------------------------------------------GATACTACGTGCCTC---CG----C--CCGA-TGC-----------------------------------CATGT-GCAAATGACCTT-CA---GAACTGTGT------CGAACTTTCCA------TAGCCGGTTTTC-TGTAG------AGTTTTTT-TTTTGTTTT--CGGTT-------------------TTC--TGTT-------CTGTT---TTTC-TTC-TTTGTTTTCGTC----GCGACGCCTC-TAAACTGAC----AAAACATATGACT-GG------GC-GGA-GAGCTTTC-G----GGTAGCTTTT-GC-A------CGCCAAAAGCCGTTTGTGTTTAGATGG-AGGGCGGAGATAAAGCTT---TTGGTTCAATAG-GTGT---------CTT--TCTCTCTCTC-------------------------------------------TCTTTTTC-GT---TTCGCAGTCATACAGGGTGCCTTGAGGGGAAACTTCGCCCAGGTGGAGGTGAGTGTG-----
droPer2 scaffold_32:554040-554448 - dpe_1470 CTTCGAGGAGAAGCCGCTCCACGTGCCCCCATTGCCGGAGCTGCAGAATGGTGAGCGACGGG-----GA---------------------------------------------------------------GCGGGGAGATC--AG-----ATCTTAAAGATAAA----------------------------------------------GATACTACGTGCCTC---CG----C--CCGA-TGC-----------------------------------CATGT-GCAAATGACCTT-CA---GAACTGTGT------CGAACTTTCCA------TAGCCGGTTTTC-TTTAG------AGTTTTTT-TTTTGTTTT--CGGTT-------------------TTC--TGTT-------CTGTT---TTTC-TTC-TTTGTTTTCGTC----GCGACGCCTC-TAAACTGAC----AAAACATATGACT-GG------GC-GGA-GAGCTTTC-G----GGCAGCTTTT-GC-A------CGCCAAAAGCCGTTTGTGTTTAGATGGGAGGGCGGAGATAAAGCTT---TTGGTTCA-TAG-GTGT---------CTT--TCTCTCTCTC-------------------------------------------TCTTTTTC-GT---TTCGCAGTCATACAGGGTGCCTTGAGGGGAAACTTCGCC-----------------------
droWil2 scf2_1100000004540:2375740-2376018 - TTTCGAGGAGAAGCCTCTGCATGTGCCCCCATTGTCGGAGCTACAAAATGGTGAGTATTTTT-----TT----AC--TACTATT-------------------------ACTTATTATTATT---------------------ATT-TGGAGG---CACTCCAAAC------------------ACACACACACACACACATATACATAGATACAA---GTTGCGAGC--------------------------------------------------------GGG-CCAAATGACCTT-CAAG--AGCTCT-----------TTTTCCCATAAAGCTAGCCGGTTTTT-GTTGTTTTT---------T-T--------------------------------------------TTTTTTTTTG-------G-CTC-TCTGTTTTTATT--CTAAGC---------------AACC-GAAACATATGATC-GA---GAGCA-CTG-GAGCTTTT-C----CCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:2692394-2692591 + GTTTTTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--------------------TGTTCATTCT--CAGCAC--------------ATC-AAGAAATGTGACT-AGCAG---CT-GGA-GAGCTTTG-G----CGCAGCTTTT-GGC----------------G-----TTGTCTTGATTG-AGGGC-GAGATAAAGCTT---TTG------CA--TTGTATACAT--------TCGCTCTCTC-------------------------------------------CCTCTCTCGCT---CTCCCAGTTATACAGGGTGCGCTGCGTAAAAACTTTGCAACAGCCAGCGTGCAGGTG-----
droMoj3 scaffold_6654:1195377-1195555 - ACAAAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGAAC-GTCAG---CT-GGA-GAGCTTTT-G---ATTTAGCTTTT-CA---------------GCG-----TTGTCTTGATTG-AGGGC-AAGATAAAGCTT---TTG------CCA-GTGTCAACGCTCA---AC--ACTCTCTC-------------------------------------------TTTCTCTCCCT---CTCTCAGTCATACAGGGTGCTCTGCGTAAAAACTTTGTTAACGCCTCTGTTGAGGTG-----
droGri2 scaffold_15110:3683869-3684056 + GTTTGAAGAGAAGCCATTGTATGTGCCCTCGTTGGAAGAGTTGCAGTCAGGTGAGGCGAGCA-----------CT--T--------------------AAAC-------AGTTGA-------ACAGAT--TC----------CAATC-----ACCAGC---ACGAC----------------------------------------------AACA---CGA-----------------------AC-----------------------------------T-CAA-GCAAATGACCTT-CACG-CAAGTGTGT------CGAACTTTCCA------TAGCCGGTTTTC-TTGAT------AGG-----------------------------------------------------TGTTTTCT-------G-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTTTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGTTACAGAACGGTGAGTCGAGTT-----GG---------------------------------------------------------ATTTCC----------CAGAG-----ATCCCACAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCAGAACGGTGC------CGAACTTTCCA------CAGCCGGTTTTC-GGTGGGTTCTG-CGCT--------------------------------C--TGTG-------TTTTTTGTTTTGT-------G-CTT-GCTGTTTTCATT----GAGCAAATCC-CAAACAGAAACA-GAAACATATGATT-GG------CG-GCG-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------CGG-TTA-------------------------------------------------------------------C--CCTCCCTCT---CCCACAGTTATACAGGGTGCCCTGGCCGCCAACTTCGCCAATGTGGACGTCAGTGTG-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACTTCGCCAATGTGGAC..............2213.00301200000000000000
...............................TTGTCGGAGTTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00202000000000000000
..............................ATTGTCGGAGTTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201100000000000000
....................ACGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000000000
..............................................................................................................................................................................................................................................................................................T-GCAAATGACCTT-CAGCAGAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000000000
................................................................................................................................................................................................................................................................................................................CAGAACGGTGC------CGAACTTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...........AGCCGCTGTACGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
...................................................................................................................................................................................................................................................................................................................AACGGTGC------CGAACTTTCCA------C.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..................GTACGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....GAGGAGAAGCCGCTGTACGTGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
....................................................................................................................................................................................................................................................................................................ATGACCTT-CAGCAGAACGGTGC------CGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
..................GTACGTGCCCCCATTGTCGGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
droSec2
CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGCTACAGAACGGTGAGTCGAGTT-----GG---------------------------------------------------------ATTTCC----------CAGCG-----ATCCCACAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCAGAACGGTGC------CGAACTTTCCA------CAGCCGGTTTTT-GGTGGGTTCTG-CGCT--------------------------------C--TGTG-------AT-TTTGTTTTCT-------G-CTT-GCTGTTTTCATT----GAGCAAATCCCAAAACAGAAACA-GAAACATATGATT-GG------CG-GCG-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------CGG-TTA-------------------------------------------------------------------C--CCTCCCTCT---CCCACAGTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGGACGTTAGTGTG-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................CCATTGTCGGAGCTACAGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0021100
..............CGCTGTACGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020020
...........................CCCATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020011
CTTCGAGGAGAAGCCGCTGTACGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020020
...................................CGGAGCTACAGAACGGTGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTGTTTTCT-------G-CTT-GCTGTT...................................................................................................................................................................................................................................................................................................................2111.0010010
..............................ATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCCA------------TATC-----TCGTCTAGATGG-AGGTC-...............................................................................................................................................................................2611.0010100
............................................................................................................................................................................................................................................................................................................................................................TT-GGTGGGTTCTG-CGCT--------------------------------C--TGT...........................................................................................................................................................................................................................................................................................................................................................2111.0011000
...........................................................................................................................................................................................................................................................................................ATGT-GCAAATGACCTT-CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGGACGTTAGTGC......1811.0010010
..TCGAGGAGAAGCCGCTGTACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................CGGTGAGTCGAGTT-----GG---------------------------------------------------------ATTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..............................ATTGTCGGAGCTACAGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.................TGTACGTGCCCCCATTGTCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.............................CATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
............................CCATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................ACGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
CTTCGAGGAGAAGCCGCTGTACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACTTCGCCAATGTGGACGTTAGT........2811.0010010
....................ACGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................ACGTGCCCCCATTGTCGGAGCTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..TCGAGGAGAAGCCGCTGTACGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACTTCGCCAATGTGGACGTT...........2411.0010010
..........................................ACAGAACGGTGAGTCGAGTT-----G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
................................TGTCGGAGCTACAGAACGGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
CTTCGAGGAGAAGCCGCTGTACGTGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
........................GCCCCCATTGTCGGAGCTACAGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGGACGTTAGTGT......1811.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATGTGGACGTTAGTGT......2111.0010010
...........AGCCGCTGTACGTGCCCCCATTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
dm3
CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAACGGTGAGTCGAGTT-----GG---------------------------------------------------------ATTTCC----------CAGCG-----ATCCCGCAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCAGAACGGTGC------CGAACTTTCCA------CAGCCGGTTTTC-GGTGGGTTCTA-CGTT--------------------------------C----------------TGTGTTTTTT-------G-TTT-GCTGTTTTCATT----GAGCAAATCT-CAAACAGAAACA-GAAACATATGATT-GG------CG-GTG-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------TGG-TTA-------------------------------------------------------------------C--CCTACCTCT---CTCACAGTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGTG-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
CTTCGAGGAGAAGCCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GGAGAAGCCGCTGTACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CATGT-GCAAATGACCTT-CAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-GCTGTTTTCATT----GAG......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGG-AGGTC-GAGATAAAGCT....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................TAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TA-CGTT--------------------------------C----------------TGTGTTTTTT-------G-TTT-GCTGT....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGGAGAAGCCGCTGTACGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACAGGGTGCCCTGGCGGCCGG..............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTCGAGGAGAAGCCGCTGTACGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................CATTGTCAGAGTTGCAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........AGCCGCTGTACGTGCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTGTCAGAGTTGCAGAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATATGATT-GG------CG-GTG-GAGCT...............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............CGCTGTACGTGCCCCCATTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GTCGAGTT-----GG---------------------------------------------------------ATTTCC----------CAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CGGTGAGTCGAGTT-----GG---------------------------------------------------------ATTTCC----------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........AGAAGCCGCTGTACGTGCCCCCATTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................TACGTGCCCCCATTGTCAGAGTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................TTTCC----------CAGCG-----ATCCCGCAGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AACGGTGAGTCGAGTT-----GG---------------------------------------------------------AT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACAGGGTGCCCTGGC....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCTA-CGTT--------------------------------C----------------TGTGTTTTTT-------G-TTT-GCT......................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........AGAAGCCGCTGTACGTGCCCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGCTACAGAACGGTGAGCCGCCTT-----GG---------------------------------------------------------G-TTCC----------CAGCG-----ATCCCACAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCGGAACGCT-C------CGAACTTTCCA------CAGCCGGTTTTC-GGTGGCTTCTC-CGCT--------------------------------C--TGCGTTCTGCGTTCTGTGTTCTAT-------G-TTT-GCTGTTTTCATT----GAGCAG-CCC-CA------AACA-GAAACATATGACT-GG------TG-CTG-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TAGC-----TGGTCTCGATGG-AGGTC-GCGATAAAGCTC---TAA------TGG-T-G-------------------------------------------------------------------------CCCTCT---C-CCCAGTTATACAGGTTGCCCTGGCCGCCAACTTCGCCAATGTGGATGTCAGTGTG-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................GTACGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2122.0040001120
....................ACGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.5030200010
CTTCGAGGAGAAGCCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.5030100020
..................GTACGTGCCCCCATTGTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.5031002000
CTTCGAGGAGAAGCCGCTGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0020001010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACTTCGCCAATGTGGA...............2021.0020002000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACTTCGCCAATGTGGATGT............2421.0022000000
..............................ATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0020100010
........AGAAGCCGCTGTACGTGCCCCCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.0020000110
..................GTACGTGCCCCCATTGTCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2221.0020001010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGGATGTCAGTGTG-----1921.0020000110
..................GTACGTGCCCCCATTGTCGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.0020100100
...........AGCCGCTGTACGTGCCCCCATTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.0020100100
...............GCTGTACGTGCCCCCATTGTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.0022000000
.TTCGAGGAGAAGCCGCTGTACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.0021000010
..................GTACGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.0020002000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATGTGGATGTCAGTGTG-----2121.0020001010
CTTCGAGGAGAAGCCGCTGTACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAACTTCGCCAATGTG.................2020.5011000000
...............GCTGTACGTGCCCCCATTGTCGGAGCTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.5010100000
......GGAGAAGCCGCTGTACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACTTCGCCAATGTG.................1820.5010100000
............................................................................................................................................................................................................................GT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000
....GAGGAGAAGCCGCTGTACGTGCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACAGGTTGCCCTGGCCGC.................................2320.5010100000
..........................CCCCATTGTCGGAGCTACAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000010
........................................CTACAGAACGGTGAGCCGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000010
....................ACGTGCCCCCATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.5010000100
...CGAGGAGAAGCCGCTGTACGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010001000
......................................AGCTACAGAACGGTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACTTCGCCAATGT..................1820.5010000010
........AGAAGCCGCTGTACGTGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACTTCGCCAATGTG.................1920.5010100000
..............CGCTGTACGTGCCCCCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGGCCGCCAACTTCGCCA......................2120.5010001000
..............CGCTGTACGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000010
.......................................GCTACAGAACGGTGAGCCGCCTT-----GG---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCCAATGTGGATGTCA..........2020.5010000010
.............................CATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000100
..............................ATTGTCGGAGCTACAGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACTTCGCCAATGTGGA...............2120.5010001000
............GCCGCTGTACGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.5010001000
.TTCGAGGAGAAGCCGCTGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5011000000
CTTCGAGGAGAAGCCGCTGTACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5011000000
..................GTACGTGCCCCCATTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATGTGGATGTCAGTGTG-----2220.5010000100
........AGAAGCCGCTGTACGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000100
....GAGGAGAAGCCGCTGTACGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010001000
........AGAAGCCGCTGTACGTGCCCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000
....................ACGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAACTTCGCCAATGTGGA...............2220.5010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCAATGTGGATGTCAGT........2120.5010000100
........................................................................................................................................................................................................................................................................................................................................................................TC-CGCT--------------------------------C--TGCGTTCTGCGTTC................................................................................................................................................................................................................................................................................................................................................2120.5011000000
.................TGTACGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCAATGTGGATGTCAGTG.......2220.5010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------TAGC-----TGGTCTCGATGG-AGGT.................................................................................................................................................................................2120.5010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGTTCTGTGTTCTAT-------G-TTT-GCT......................................................................................................................................................................................................................................................................................................................2520.5010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATGTGGATGTCAGTG.......2020.5011000000
.................TGTACGTGCCCCCATTGTCGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACTTCGCCAATGTGGATGTCA..........2520.5010000010
......................................AGCTACAGAACGGTGAGCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATGTGGATGTCAGTGT......2020.5010001000
..TCGAGGAGAAGCCGCTGTACGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000010
.TTCGAGGAGAAGCCGCTGTACGTGCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010100000
...............GCTGTACGTGCCCCCATTGTCGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCAATGTGGATGTCAGTGTG-----2420.5010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTCGCCAATGTGGATGTCAGTGT......2720.5010000010
.......................TGCCCCCATTGTCGGAGCTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
..................GTACGTGCCCCCATTGTCGGAGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000100
........................GCCCCCATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000010
............................CCATTGTCGGAGCTACAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000100
...........AGCCGCTGTACGTGCCCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000
........AGAAGCCGCTGTACGTGCCCCCATTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010000100
.............................CATTGTCGGAGCTACAGAACGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000010
droYak3
CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGCTGCAGAACGGTGAGCCGAGTTG-CTTGG---------------------------------------------------------ATTTCC----------CAGCG-----ATCCCAGAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATGT-GCAAATGACCTT-CAGCAGAACGGTGC------CGAACTTTCCA------CAGCCGGTTTTC-GGTCACTTCTG-CGTT----CTATGTT---------------------C--TGTG-------TTTTCTGTTTTGTGATTGCCA-TTT-GCTGTTTTCATT----GAGCAGATCC-CAAACAGAAACA-GAAACATATGACT-GT------TC-CCA-GAGCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----TCGTGTAGATGG-AGGTC-GCGATAAAGCTC---TAA------TCA-TTG-------------------------------------------------------------------------CCCTCT---CCCGCAGTTATACAGGGTGCCCTGTCGGCCAACTTCGCCAATGTGGATGTCAGTGTG-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................GTGCCCCCATTGTCGGAGCTGCAGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29113.0013000000000013
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATGTGGATGTCAGTGTG-----2212.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCAACTTCGCCAATGTGGATGTCAGT........2912.00200000020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTT-G----CTCAGCTTTT-GCCA------------TATC-----T.................................................................................................................................................................................................2611.00101000000000
.....................CGTGCCCCCATTGTCGGAGCTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...CGAGGAGAAGCCGCTGTACGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTT-GCCA------------TATC-----TCGTGTAGAT........................................................................................................................................................................................2411.00100100000000
CTTCGAGGAGAAGCCGCTGTACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
...............................TTGTCGGAGCTGCAGAACGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................CTG-CGTT----CTATGTT---------------------C--TGTG-------TTTTCTGT...........................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTGCCCTGTCGGCC................................1811.00110000000000
CTTCGAGGAGAAGCCGCTGTACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
CTTCGAGGAGAAGCCGCTGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..................GTACGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
.......GAGAAGCCGCTGTACGTGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACAGGGTGCCCTGTCGGC.................................2211.00100100000000
....................ACGTGCCCCCATTGTCGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
..................GTACGTGCCCCCATTGTCGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACTTCGCCAATGTGGAT..............2211.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATCC-CAAACAGAAACA-GA...............................................................................................................................................................................................................................................................................2111.00100100000000
.......GAGAAGCCGCTGTACGTGCCCCCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..................GTACGTGCCCCCATTGTCGGAGCTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
..............................ATTGTCGGAGCTGCAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...............GCTGTACGTGCCCCCATTGTCGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................TGCAGAACGGTGAGCCGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....................CGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGGATGTCAGTGTG-----1911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT----GAGCAGATCC-CAAACAGA......................................................................................................................................................................................................................................................................................2211.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCGCCAATGTGGATGTCAGTGC......2611.00100100000000
droEug1
CTTCGAGGAGAAGCCGCTCTACGTGCCCCCATTGTCGGAGCTACAGAACGGTGAGCCGAGCT-----GAGTTTCC--C--------------------A------------------------CAGAT--CC----------CACAG-----ATCTGAGAGATAAC----------------------------------------------AATA---CGTGCAATATTCG----C--CCGAGTGC-----------------------------------CATGT-GCAAATGACCTT-CA---GAACAGTGC------CGAACTTTCCA------TAGCCGGTTTTT-GGTCGGTTCTC-TGTT--------------------------------C--TCAGTACTGAGTTCTGTGTTTTTT-------G-CTT-TTTGTTTTCATT----GAGCTG-TCC-GA------AACA-GAAACATATGATT-GG------GC-GCG-GAGCTTTT-G----GCTAGCTTTT-GCCA------------TATG-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------TGCGTT-------------------------------------------------------------------------TCTCTCT---CCTCCAGTTATACAGGGTGCCCTAACGGCCAACTTTGCCAGTGTGGATGTCAGTGTG-----SizeHit CountTotal NormTotal
No Reads
droBia1
CTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCGGAGCTGCAGAACGGTGAGTGCCGAG---------TTCC--C--------------------AGAGGTTCCAGACTCGAGATTCTA----G---A-GCCGAGACCC--GCG-----ATCCCAGAGATAAC----------------------------------------------AATA---CGTGCCGTTTGGG----CCCCCGA--GG-----------------------------------CGTGT-GCAAATGACCTT-CAGAAGAACAGTGC------CGAACTTTCCA------TAGCCGGTTTTG-GGTCGGTACTG----------------------------------------------------------TTTT-T-------A--TT-TCGGTTTTCATT----GAGCAA-TCC-AA------AGC--AAAACATATGATT-GG------GC-CGA-AAGCTTTT-G---GCGCAGCTTTTCGCTA------------TGTG-----TCGTCCAGATGG-AGGTC-GAGATAAAGCTC---TAA------TGG-GTGT---------CT-------------------------------------------------------C--CTCTCCGC----TCTCCAGTCATACAGGGTGCGCTGACCGCCAACTTCGCCCAGGTGGACGTGAGTGTG-----SizeHit CountTotal NormTotal
No Reads
droTak1
CTTCGAGGAGAAGCCACTGTATGTGCCCCCATTGTCGGAGTTGCAGAAAGGTGAGTTCT------------------C-----------AGAGTTCCCAGAG-------ACTTGGGATTCTA----GCTTAA----------CAGAG-----ATCCCAGAGATAAC----------------------------------------------AATA---CGT-----------------------GC-----------------------------------CATATAGCAAATGACCTT-CAGAAGAACGGTGC------CGAACTTTCCA------TAGCCGGTTTTTCGGTTGGTTCTA-GGTT--------------------------------TTTTATG-------TTTTGTGTTTTGCGTTTGGAG-TTTCTCTGTTTTCATT----GAGCAA-TCC-AA------AACACTAAACATATGATT-GA------AC-CTA-GAGCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTTCGAGGAGAAACCACTCCATGTGCCGCCACTCTTAGAACTACAAAAGGGTGAGCATTACT-----GA---------------------------------------------------------ATGAAG----------CATTG-----AT---------AAA-------------A----ATACACAGAAAC----------------AAAA---TGTATTAAATATGA-----------CAC-----------------------------------TTTTT-CGAAATAATATTTCA---TATCAACAC------TGAA------A------AAATCGATTGTT-GATTGATACAA--ATT--------------------TAGTATTGCTTAC---------TTTTTT-------TTTT-------AAT----TTGGTCTGATC----AAA---------------------------------T-GG------TG-TCA-AAGAATA----------------------------------------------------------------------------------------------------------CC--ATTCTTTTTTTTCCTGTGTTGATCTCGCCTAGCTGTGTTCTCAGATAATGCTTT-TTCTTGC---CCTTTAGTTATACAGGGTGCTCTGAATGCCAACTTTGCCTCAGTTGATGTTAATGTG-----SizeHit CountTotal NormTotal
No Reads
droRho1
CTTCGAGGAGAAGCCTCTTTATGTGCCCCCATTGTCGGAACTGCAGAACGGTGAGCCAAGCTGACTCTG---------------------------------------------------------ATTTCC----------AAGAG-----ATCCGCGAGATAAC----------------------------------------------AATA---CGTGCCATATTCG----CT-CCGAGTGC-----------------------------------CATGT-GCAAATGACCTT-CA--AAAACGGTGC------CGAACTTTCCA------TAGCCGGTTTTC-GGTCGGTTCTG--------A----CGTTTCA-----TTGTA-------C--TGTGTACTGTGTT-------TTGTGTTTGGCG-TTT-TCTGTTTTCATT----GAGCAG-TCC-AA------AACA-GAAACATATGATT-GG------GCCGAAAAAGCTTTCTG---GCATAGCTTTT-GCTA------------TATG-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTT---TAA------TGG-ATT-------------------------------------------------------------------T--CTCTCTTCT---CCTCCAGTTATACAGGGTGCCCTGACCGCCAACTTTGCCAAAGTGGACGTGAGTGTG-----SizeHit CountTotal NormTotal
No Reads
droFic1
CTTCGAGGAGAAGCCCCTGTATGTGCCCCCATTGTCGGAGCTGCAGAACGGTGAGTTGAGAT---TCTG---------------------------------------------------------AGTTCC----------CACCG-----ATCCGAGAGATAAC----------------------------------------------AATA---CGTGCTGTATTCTGGGGTTCTCGAGTGC-----------------------------------CATGT-GCAAATGACCTT-CA---CAACGGTGC------CGAACTTTCCA------TAGCCGGTTTTT-GGTCGCTTCTC------------AGTACT-------GAGTTCTACGTTC----------------TTTATTTTCT-------A-TTT-TTTGTTTTCATT----GAGCAG-TCC-AA------AACA-GAAACATATGATT-GG------GC-CGA-AAGCTTTGGG---GGCCAGCTTTT-GCCA------------TATG-----TCGTCTAGATGG-AGGTC-GAGATAAAGCTC---TAA------TTCATTGCCTCCCCTCC---TCTCTCTCTCTC-------------------------------------------TCTCTCTCACTCTCTCTCCAGTTATACAGGGTGCCTTGAGCGAGAACTTTGCCAGTGTGGACGTGAGTGTG-----SizeHit CountTotal NormTotal
No Reads
droKik1
CTACGAGGAGAAGCCCCTGCATGTGCCCTCATTGCCGGAGCTGCAGAACGGTGAGCAGCGTT-----AA-----------------------------------------------------GCCGATTTCC----------CA--G-----ATCCGCCAGATAAC----------------------------------------------AATA---CGTGCTGTATT-----------GAGAGCTCTGTGCTGTGTGCTCTGTTCCGTGTTCTGTGTTCTGGGAGCCGAATGACCTT-CA---GAACTGTGCCATAGCCAAACTTTCCA------TAGCCGGTTTTC-GCTCAGTTCTG-T----------------------------------------T-------GATTTGTGTTTTCT-------G-ATT-TCTGTTTTCATT----GCGCGA-ACT--A------AACA-CAAACATATGATTTTG------GC-CGA-GAGCTTTT-G---GGGCAGCTTTT-GGCACTCGGACGCCTATATGTTTTACTGTCCAGATGG-AGGTC-GAGATAAAGCTCCACTAA------CAG-TTT-------------------------------------------------------------------G--CTCTCCTCT---CCCGCAGTGATACAGGGTGCCCTGAATGGCAACTTCGCCCAGGTGGAAGTCAGCGTG-----SizeHit CountTotal NormTotal
No Reads
droAna3
CTTCGAGGAGAAGCCTCTGTATGTGCCCCCATTGTCGGAGCTGCAGAATGGTGAGTGT---------GAATTTCCGCGACAATTTCCCGAG-----------------------------------ATTTCC----------CATC-CCGAGA---GAGAGATAAC------------------ATATAGCCATAGATCCATAGCCACTGAAAAAA---CGTGCCAGCTTCGG-----------TGC---------------------------------TTCATGA-GCAAATGACCTT-CA---GAACTGTGC------CGAACTTTCCA------TAGCCGGTTTTG-GTCCG------AGGTTCTTA----CGATT--CTGTT-------------------TGC--TGCTCAGTGTTTTTG-----GTC-GTT-TCTGTTTTCATT----GAGCAG-TCT--A------AACA-CAAACATATGATT-TC------AC-TGA-GAGCTTTT-GATTACTTAGCTTTG-GCTA------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
CTTCGAGGAGAAGCCTCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003200100
....................ATGTGCCCCCATTGTCGGAGCTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....................................GAGCTGCAGAATGGTGAGTGT---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..........................CCCCATTGTCGGAGCTGCAGAATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
....................ATGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................CTGTATGTGCCCCCATTGTCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..................GTATGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................GTGCCCCCATTGTCGGAGCTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................CTGTATGTGCCCCCATTGTCGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
CTTCGAGGAGAAGCCTCTGTATGTGCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
........................GCCCCCATTGTCGGAGCTGCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................GTATGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................ATGTGCCCCCATTGTCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................GCAGAATGGTGAGTGT---------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
..................GTATGTGCCCCCATTGTCGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................ATGTGCCCCCATTGTCGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
CTTCGAGGAAAAGCCCCTGTATGTGCCCCCATTGTCGGAGCTGCAGAATGGTGAGTGT---------GA---------------------------------------------------------ATTTTC----------CACAT-----TTCCCAGAGAGAGAGATACTTGGCGAGATAACATATAGCCACAG----------------AAAA---CGTGCCAGCTTCGG-----------TGC---------------------------------TTCATGA-GCAAATGACCTT-CA---GAACTGTGC------CGAACTTTCCA------TAGCCGGTTTTG-GTCCG------AGGTTCTTA----CGATT--CTGTT-------------------TGC-------AGTGTTTTTG-----GTC-GTT-TCTGTTTTCATT----GAGCAG-TTC--A------AACA-CAAACATATGATT-TC------AC-TGG-GAGCTTTT-GATTAGTTAGCTTTG-GCTA------------CACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CTTCGAGGAGAAGCCGCTCCACGTGCCCCCATTGCCGGAGCTGCAGAATGGTGAGCGACGGG-----GA---------------------------------------------------------------GCGGGGAGATC--AG-----ATCTTAAAGATAAA----------------------------------------------GATACTACGTGCCTC---CG----C--CCGA-TGC-----------------------------------CATGT-GCAAATGACCTT-CA---GAACTGTGT------CGAACTTTCCA------TAGCCGGTTTTC-TGTAG------AGTTTTTT-TTTTGTTTT--CGGTT-------------------TTC--TGTT-------CTGTT---TTTC-TTC-TTTGTTTTCGTC----GCGACGCCTC-TAAACTGAC----AAAACATATGACT-GG------GC-GGA-GAGCTTTC-G----GGTAGCTTTT-GC-A------CGCCAAAAGCCGTTTGTGTTTAGATGG-AGGGCGGAGATAAAGCTT---TTGGTTCAATAG-GTGT---------CTT--TCTCTCTCTC-------------------------------------------TCTTTTTC-GT---TTCGCAGTCATACAGGGTGCCTTGAGGGGAAACTTCGCCCAGGTGGAGGTGAGTGTG-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTCGCCCAGGTGGAGGT............2313.0030300000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTCGCCCAGGTGGA...............2012.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATACAGGGTGCCTTGAGG...................................2112.0020100100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAACTTCGCCCAGGTGGAGGTG...........2511.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGGGAAACTTCGCCCAGGT..................2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACAGGGTGCCTTGAGGGGAAA..............................2411.0010100000000
..................CCACGTGCCCCCATTGCCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGAAACTTCGCCCAGGTGGAGGT............2611.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGGTGGAGGTGAGTGT......2011.0010000001000
..................CCACGTGCCCCCATTGCCGGAGCTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...................................CGGAGCTGCAGAATGGTGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTCGCCCAGGTGGAGGT............2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGGTGCCTTGAGG...................................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGGTGCCTTGAGGGG.................................2011.0010100000000
..................CCACGTGCCCCCATTGCCGGAGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTCGCCCAGGTGGAG..............2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATACAGGGTGCCTTGAGGG..................................2211.0010100000000
..................CCACGTGCCCCCATTGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACAGGGTGCCTTGAG....................................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGGTGCCTTGAGGGGA................................2111.0010000001000
.................TCCACGTGCCCCCATTGCCGGAGCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................CCCCATTGCCGGAGCTGCAGAATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACAGGGTGCCTTGAGGGGAAACTT...........................2711.0010000001000
..................CCACGTGCCCCCATTGCCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACAGGGTGCCTTGAGG...................................1911.0010100000000
................................................TGGTGAGCGACGGG-----GA---------------------------------------------------------------GCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................CCACGTGCCCCCATTGCCGGAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
..............................ATTGCCGGAGCTGCAGAATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................CCATTGCCGGAGCTGCAGAATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................GCCGGAGCTGCAGAATGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.0810100000000
droPer2
CTTCGAGGAGAAGCCGCTCCACGTGCCCCCATTGCCGGAGCTGCAGAATGGTGAGCGACGGG-----GA---------------------------------------------------------------GCGGGGAGATC--AG-----ATCTTAAAGATAAA----------------------------------------------GATACTACGTGCCTC---CG----C--CCGA-TGC-----------------------------------CATGT-GCAAATGACCTT-CA---GAACTGTGT------CGAACTTTCCA------TAGCCGGTTTTC-TTTAG------AGTTTTTT-TTTTGTTTT--CGGTT-------------------TTC--TGTT-------CTGTT---TTTC-TTC-TTTGTTTTCGTC----GCGACGCCTC-TAAACTGAC----AAAACATATGACT-GG------GC-GGA-GAGCTTTC-G----GGCAGCTTTT-GC-A------CGCCAAAAGCCGTTTGTGTTTAGATGGGAGGGCGGAGATAAAGCTT---TTGGTTCA-TAG-GTGT---------CTT--TCTCTCTCTC-------------------------------------------TCTTTTTC-GT---TTCGCAGTCATACAGGGTGCCTTGAGGGGAAACTTCGCC-----------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................CCACGTGCCCCCATTGCCGGAGCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATACAGGGTGCCTTGAGGG..................................2211.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTGCCTTGAGGGGAA...............................1911.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGGTGCCTTGAGGGG.................................2011.001001000
...................CACGTGCCCCCATTGCCGGAGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGGGTGCCTTGAGGG..................................1911.001001000
droWil2
TTTCGAGGAGAAGCCTCTGCATGTGCCCCCATTGTCGGAGCTACAAAATGGTGAGTATTTTT-----TT----AC--TACTATT-------------------------ACTTATTATTATT---------------------ATT-TGGAGG---CACTCCAAAC------------------ACACACACACACACACATATACATAGATACAA---GTTGCGAGC--------------------------------------------------------GGG-CCAAATGACCTT-CAAG--AGCTCT-----------TTTTCCCATAAAGCTAGCCGGTTTTT-GTTGTTTTT---------T-T--------------------------------------------TTTTTTTTTG-------G-CTC-TCTGTTTTTATT--CTAAGC---------------AACC-GAAACATATGATC-GA---GAGCA-CTG-GAGCTTTT-C----CCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................GTGCCCCCATTGTCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000
..............CTCTGCATGTGCCCCCATTGTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
............................CCATTGTCGGAGCTACAAAATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...........................CCCATTGTCGGAGCTACAAAATGGTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.................TGCATGTGCCCCCATTGTCGGAGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...CGAGGAGAAGCCTCTGCATGTGCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
droVir3
GTTTTTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--------------------TGTTCATTCT--CAGCAC--------------ATC-AAGAAATGTGACT-AGCAG---CT-GGA-GAGCTTTG-G----CGCAGCTTTT-GGC----------------G-----TTGTCTTGATTG-AGGGC-GAGATAAAGCTT---TTG------CA--TTGTATACAT--------TCGCTCTCTC-------------------------------------------CCTCTCTCGCT---CTCCCAGTTATACAGGGTGCGCTGCGTAAAAACTTTGCAACAGCCAGCGTGCAGGTG-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCCAGCGTGCAGGTG-----2012.002000000000000000000000000000000000000000000000000000000000001010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTTGATTG-AGGGC-G..............................................................................................................................................................................1812.002000000200000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGCAACAGCCAGCGTGCAGGT......2611.001000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TTGTATACAT--------TCGCTCTCTC-------------------------------------------CCTCT.......................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTG-AGGGC-GAGATAAA.......................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----------------G-----TTGTCTTGATTG-AGGGC-G..............................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCCAGCGTGCAGGT......2011.001000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--CAGCAC--------------ATC-AAGAAATGT........................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGTGCGCTGCGTAAAAACTTT..........................2511.001000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATTG-AGGGC-GAGATAAA.......................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAACTTTGCAACAGCCAGC..............2311.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ACAAAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGAAC-GTCAG---CT-GGA-GAGCTTTT-G---ATTTAGCTTTT-CA---------------GCG-----TTGTCTTGATTG-AGGGC-AAGATAAAGCTT---TTG------CCA-GTGTCAACGCTCA---AC--ACTCTCTC-------------------------------------------TTTCTCTCCCT---CTCTCAGTCATACAGGGTGCTCTGCGTAAAAACTTTGTTAACGCCTCTGTTGAGGTG-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATACAGGGTGCTCTGC.....................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACAGGGTGCTCTGCGTAAAAACTTT..........................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGTTAACGCCTCTGTTGAG........2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTAAAAACTTTGTTAAC....................2011.001100000
droGri2
GTTTGAAGAGAAGCCATTGTATGTGCCCTCGTTGGAAGAGTTGCAGTCAGGTGAGGCGAGCA-----------CT--T--------------------AAAC-------AGTTGA-------ACAGAT--TC----------CAATC-----ACCAGC---ACGAC----------------------------------------------AACA---CGA-----------------------AC-----------------------------------T-CAA-GCAAATGACCTT-CACG-CAAGTGTGT------CGAACTTTCCA------TAGCCGGTTTTC-TTGAT------AGG-----------------------------------------------------TGTTTTCT-------G-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTTTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................GTTGCAGTCAGGTGAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110

Generated: 05/18/2015 at 11:40 AM